Rh7BG309800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002322
Physical Location & Seq
Reverse (-)
29852239 .. 29852448
210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG309800.1

Sequence Viewer

Length: 210 bp
ATGGAGCTGCCAGAGCCGAGGCGTGTGAGGCGTCGAGTCGAAATTGGAGATCTGAGTGAATCGGAGATGAGTAGAGAATCGTCTCCAGTGAGAGAATCGGAGACGAGTACAGAATCGGAGAGATCTCATGAGTTGGACTCCAGTGAGGTAGCTCCGATCGGAGCTTCTTTGTCGCCGTCGTCATCTTCAGGCATGGCGGCGCCGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.52

Weight (kDa)

4.66

Isoelectric Point (pI)

132.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 199
AciI CCGC 1 cut(s) 197
AcuI CTGAAG 1 cut(s) 171
AcyI GRCGYC 2 cut(s) 31, 200
AfaI GTAC 1 cut(s) 109
AluBI AGCT 3 cut(s) 7, 152, 164
AluI AGCT 3 cut(s) 7, 152, 164
Alw26I GTCTC 2 cut(s) 87, 95
ApeKI GCWGC 1 cut(s) 7
AspLEI GCGC 1 cut(s) 202
BanI GGYRCC 1 cut(s) 199
BceAI ACGGC 2 cut(s) 160, 187
BcoDI GTCTC 2 cut(s) 87, 95
BfoI RGCGCY 1 cut(s) 203
BglII AGATCT 2 cut(s) 49, 122
BisI GCNGC 2 cut(s) 8, 198
BlsI GCNGC 2 cut(s) 9, 199
BmiI GGNNCC 1 cut(s) 201
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 2 cut(s) 69, 124
BsaHI GRCGYC 2 cut(s) 31, 200
BsaJI CCNNGG 1 cut(s) 17
Bse1I ACTGG 2 cut(s) 86, 141
BseDI CCNNGG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 2 cut(s) 86, 141
Bsh1285I CGRYCG 1 cut(s) 159
BshNI GGYRCC 1 cut(s) 199
BsiEI CGRYCG 1 cut(s) 159
BsmAI GTCTC 2 cut(s) 87, 95
BsmBI CGTCTC 2 cut(s) 87, 95
Bsp143I GATC 3 cut(s) 49, 122, 156
BspACI CCGC 1 cut(s) 197
BspCNI CTCAG 1 cut(s) 45
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 201
BspT107I GGYRCC 1 cut(s) 199
BsrI ACTGG 2 cut(s) 86, 141
BssECI CCNNGG 1 cut(s) 17
BssMI GATC 3 cut(s) 49, 122, 156
BssNI GRCGYC 2 cut(s) 31, 200
BstACI GRCGYC 2 cut(s) 31, 200
BstDEI CTNAG 1 cut(s) 53
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 3 cut(s) 52, 125, 159
BstMAI GTCTC 2 cut(s) 87, 95
BstMBI GATC 3 cut(s) 49, 122, 156
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 2 cut(s) 13, 28
BstX2I RGATCY 2 cut(s) 49, 122
BstYI RGATCY 2 cut(s) 49, 122
BtsIMutI CAGTG 2 cut(s) 93, 148
CciI TCATGA 1 cut(s) 127
CfoI GCGC 1 cut(s) 202
CseI GACGC 1 cut(s) 20
Csp6I GTAC 1 cut(s) 108
CviAII CATG 2 cut(s) 128, 193
CviJI RGCY 4 cut(s) 7, 16, 152, 164
CviKI_1 RGCY 4 cut(s) 7, 16, 152, 164
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 1 cut(s) 53
DinI GGCGCC 1 cut(s) 201
DpnI GATC 3 cut(s) 51, 124, 158
DpnII GATC 3 cut(s) 49, 122, 156
Eco57I CTGAAG 1 cut(s) 171
EgeI GGCGCC 1 cut(s) 201
EheI GGCGCC 1 cut(s) 201
Esp3I CGTCTC 2 cut(s) 87, 95
FaeI CATG 2 cut(s) 131, 196
FaiI YATR 2 cut(s) 129, 194
FatI CATG 2 cut(s) 127, 192
Fnu4HI GCNGC 2 cut(s) 8, 198
Fsp4HI GCNGC 2 cut(s) 8, 198
GlaI GCGC 1 cut(s) 201
GluI GCNGC 2 cut(s) 8, 198
GsuI CTGGAG 2 cut(s) 69, 124
HaeII RGCGCY 1 cut(s) 203
HgaI GACGC 1 cut(s) 20
HhaI GCGC 1 cut(s) 202
Hin1I GRCGYC 2 cut(s) 31, 200
Hin1II CATG 2 cut(s) 131, 196
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 6 cut(s) 36, 59, 77, 95, 113, 137
Hpy188I TCNGA 6 cut(s) 54, 64, 100, 118, 156, 161
Hpy188III TCNNGA 1 cut(s) 128
Hpy99I CGWCG 2 cut(s) 36, 181
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 28
HpyF3I CTNAG 1 cut(s) 53
Hsp92I GRCGYC 2 cut(s) 31, 200
Hsp92II CATG 2 cut(s) 131, 196
HspAI GCGC 1 cut(s) 200
KasI GGCGCC 1 cut(s) 199
Kzo9I GATC 3 cut(s) 49, 122, 156
LmnI GCTCC 3 cut(s) 4, 157, 161
LpnPI CCDG 4 cut(s) 24, 99, 154, 174
MalI GATC 3 cut(s) 51, 124, 158
MboI GATC 3 cut(s) 49, 122, 156
MboII GAAGA 1 cut(s) 177
MflI RGATCY 2 cut(s) 49, 122
MluCI AATT 1 cut(s) 42
Mly113I GGCGCC 1 cut(s) 200
MlyI GAGTC 2 cut(s) 45, 131
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 3 cut(s) 12, 21, 139
MwoI GCNNNNNNNGC 2 cut(s) 13, 28
NarI GGCGCC 1 cut(s) 200
NdeII GATC 3 cut(s) 49, 122, 156
NlaIII CATG 2 cut(s) 131, 196
NlaIV GGNNCC 1 cut(s) 201
NmeAIII GCCGAG 1 cut(s) 42
PagI TCATGA 1 cut(s) 127
PfeI GAWTC 4 cut(s) 59, 77, 95, 113
PkrI GCNGC 2 cut(s) 9, 199
Ple19I CGATCG 1 cut(s) 159
PleI GAGTC 2 cut(s) 44, 131
PluTI GGCGCC 1 cut(s) 203
PpsI GAGTC 2 cut(s) 44, 131
PspN4I GGNNCC 1 cut(s) 201
PsuI RGATCY 2 cut(s) 49, 122
PvuI CGATCG 1 cut(s) 159
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SatI GCNGC 2 cut(s) 8, 198
Sau3AI GATC 3 cut(s) 49, 122, 156
SchI GAGTC 2 cut(s) 45, 131
SetI ASST 4 cut(s) 9, 150, 154, 166
SfoI GGCGCC 1 cut(s) 201
Sse9I AATT 1 cut(s) 42
SsiI CCGC 1 cut(s) 197
SspDI GGCGCC 1 cut(s) 199
TaqI TCGA 2 cut(s) 34, 39
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 107
TauI GCSGC 1 cut(s) 200
TfiI GAWTC 4 cut(s) 59, 77, 95, 113
TscAI CASTG 2 cut(s) 93, 148
TseI GCWGC 1 cut(s) 7
TspRI CASTG 2 cut(s) 93, 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.