FvH4_6g36480

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002322
Physical Location & Seq
Forward (+)
28699813 .. 28703289
3477 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36480.t1

Sequence Viewer

Length: 1236 bp
ATGAATATTAACACAAACCCAAAAACAGAGATGCTGAAAACGGTGGACTTGGGCAGATTTCCTGCCATGTTTCAAGCCTCGTCGGAGGAGTTTTGGCGGGAAAACGTTCACGGCGGATGGGCTACTCTTGTTGCTGTCCTTATTGTCTTGGCTTGGAATTGCTTCAAGGGCTTGTTGCGTAAGAAATCGTCTTCTTCTTCTTCTTCTTCTACTTCTTCATCTTCAGTTAGTGCATCTGATTCAAATCCCATTGCTTCTGGCTCTGGGGGTTCACAATTCAGAGTCTCGGAATTGGTAACAGATGCAGATTTGAAGTTTCTGATTGAAAATTTGAATGAGAAGAATGAGCAGAATGAGAAATGGGACAGTGTCATAGAAAAAGGAAATGATCTTCTGTACTACAGTGCCAAGTGCTGCAAGCCTAAGGTTGGTCCTGTGAAGTACTTGAGTGTGACTATATTTGAAGACTGCTCTCCGGAGTTGCTGAGAGACTTCTACATGGACAATGATTACAGAAAGCAATGGGATAAGATGCTGATTGAGCATGAACAGTTACATGTGGACAAAAACAATGGGGTTGAAGTAGGCCGGACAATAAAGAAGTTTCCACTTTTGACTCCAAGAGAATATGTATTAGCTTGGAGATTGTGGGAGGGAAAAGATAACACATTCTACTGTTTTGTCAAGGAATGTGAACATTCTTTAGCACCGCGGCAGAAGAAGTATGTACGTGTTAGTACTTTCAGATCTGGTTGGCGAATCAAGAAAGTACCTGGTAGAAATGCCTGTGAGATCAAAATGTTTCACCAAGAAGATGCTGGTTTAAACGTAGAGATGGCAAAACTGGCCTTCTCAAAGGGCATATGGAGTTACATAAGTAAGATGGATAGCGCACTGCGTAAATATTCTAAAATCAGCAATGATCAATCAAGTTCTGCTGCCACTGCAGTCACTCTGATAAAAAAGGTCCCCCCTGGATTAGAGGCCACAGATAGCACCGGAGCAACCTCTGCAGAACCTATTGTTCACAAACCGATTATTGGTGGGGAGAGGAAATTGTCAAGAAGACCATCAAAGAAATTGCTAGCAAATGGCTTGCTGCTTCTCGGGGGTGTGGTCTGCTTGTCACGCGGTCGCTCTAGCCTGGGTGCAAAGGTTGCCATGGCATATATTCTGACCAAACTGAATAAGCGTGGTTCTTCATCAAGTCGAAGTGGGGATATTGCAGGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

412

Amino Acids

45.77

Weight (kDa)

9.49

Isoelectric Point (pI)

47.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 113 - 272 7.3e-10 START domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 712, 1131
AccIII TCCGGA 1 cut(s) 475
AciI CCGC 5 cut(s) 97, 114, 710, 712, 1131
AclI AACGTT 1 cut(s) 105
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 207
AfaI GTAC 5 cut(s) 398, 443, 729, 739, 771
AfiI CCNNNNNNNGG 2 cut(s) 428, 1040
AflIII ACRYGT 2 cut(s) 556, 730
AgsI TTSAA 8 cut(s) 74, 166, 243, 313, 326, 334, 464, 581
AjnI CCWGG 3 cut(s) 772, 973, 1143
AluBI AGCT 1 cut(s) 638
AluI AGCT 1 cut(s) 638
Alw26I GTCTC 2 cut(s) 289, 483
Ama87I CYCGRG 1 cut(s) 1106
Aor13HI TCCGGA 1 cut(s) 475
AoxI GGCC 3 cut(s) 586, 846, 984
ApeKI GCWGC 3 cut(s) 414, 938, 1099
ApoI RAATTY 1 cut(s) 328
Asp700I GAANNNNTTC 2 cut(s) 105, 161
AspLEI GCGC 1 cut(s) 893
AspS9I GGNCC 2 cut(s) 431, 967
AsuHPI GGTGA 1 cut(s) 797
AsuNHI GCTAGC 1 cut(s) 1084
AvaI CYCGRG 1 cut(s) 1106
AvaII GGWCC 2 cut(s) 431, 967
AxyI CCTNAGG 1 cut(s) 423
BbsI GAAGAC 3 cut(s) 183, 471, 1072
BbvI GCAGC 3 cut(s) 401, 925, 1086
BccI CCATC 4 cut(s) 111, 829, 877, 1078
BceAI ACGGC 1 cut(s) 127
BciT130I CCWGG 3 cut(s) 774, 975, 1145
BclI TGATCA 1 cut(s) 922
BcoDI GTCTC 2 cut(s) 289, 483
BfaI CTAG 2 cut(s) 1085, 1140
BfmI CTRYAG 3 cut(s) 400, 945, 1011
BglII AGATCT 1 cut(s) 746
BisI GCNGC 4 cut(s) 415, 713, 939, 1100
BlsI GCNGC 4 cut(s) 416, 714, 940, 1101
BmcAI AGTACT 2 cut(s) 443, 739
Bme1390I CCNGG 3 cut(s) 774, 975, 1145
Bme18I GGWCC 2 cut(s) 431, 967
BmeT110I CYCGRG 1 cut(s) 1106
BmgT120I GGNCC 2 cut(s) 431, 967
BmiI GGNNCC 1 cut(s) 969
BmrFI CCNGG 3 cut(s) 774, 975, 1145
BmsI GCATC 5 cut(s) 21, 242, 292, 522, 805
BmtI GCTAGC 1 cut(s) 1088
BpiI GAAGAC 3 cut(s) 183, 471, 1072
BpuEI CTTGAG 1 cut(s) 466
BsaAI YACGTR 1 cut(s) 731
BsaBI GATNNNNATC 1 cut(s) 243
BsaJI CCNNGG 4 cut(s) 710, 973, 1144, 1161
BsaWI WCCGGW 2 cut(s) 475, 998
Bsc4I CCNNNNNNNGG 2 cut(s) 428, 1040
Bse1I ACTGG 1 cut(s) 849
Bse21I CCTNAGG 1 cut(s) 423
Bse3DI GCAATG 3 cut(s) 249, 527, 925
Bse8I GATNNNNATC 1 cut(s) 243
BseAI TCCGGA 1 cut(s) 475
BseBI CCWGG 3 cut(s) 774, 975, 1145
BseDI CCNNGG 4 cut(s) 710, 973, 1144, 1161
BseGI GGATG 1 cut(s) 122
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 2 cut(s) 428, 1040
BseMI GCAATG 3 cut(s) 249, 527, 925
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 1 cut(s) 849
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 3 cut(s) 401, 925, 1086
Bsh1236I CGCG 2 cut(s) 712, 1131
Bsh1285I CGRYCG 1 cut(s) 1135
BshFI GGCC 3 cut(s) 588, 848, 986
BsiEI CGRYCG 1 cut(s) 1135
BsiHKCI CYCGRG 1 cut(s) 1106
BsiSI CCGG 3 cut(s) 476, 589, 999
BslFI GGGAC 2 cut(s) 377, 953
BslI CCNNNNNNNGG 2 cut(s) 428, 1040
BsmAI GTCTC 2 cut(s) 289, 483
BsmFI GGGAC 2 cut(s) 377, 953
BsnI GGCC 3 cut(s) 588, 848, 986
BsoBI CYCGRG 1 cut(s) 1106
Bsp13I TCCGGA 1 cut(s) 475
Bsp143I GATC 4 cut(s) 388, 746, 792, 922
Bsp19I CCATGG 1 cut(s) 1161
BspACI CCGC 5 cut(s) 97, 114, 710, 712, 1131
BspANI GGCC 3 cut(s) 588, 848, 986
BspCNI CTCAG 1 cut(s) 477
BspEI TCCGGA 1 cut(s) 475
BspFNI CGCG 2 cut(s) 712, 1131
BspLI GGNNCC 1 cut(s) 969
BspMAI CTGCAG 2 cut(s) 949, 1015
BspOI GCTAGC 1 cut(s) 1088
BsrDI GCAATG 3 cut(s) 249, 527, 925
BsrI ACTGG 1 cut(s) 849
BssECI CCNNGG 4 cut(s) 710, 973, 1144, 1161
BssMI GATC 4 cut(s) 388, 746, 792, 922
BssT1I CCWWGG 1 cut(s) 1161
Bst2UI CCWGG 3 cut(s) 774, 975, 1145
Bst4CI ACNGT 5 cut(s) 43, 368, 404, 552, 677
BstAPI GCANNNNNTGC 2 cut(s) 1010, 1157
BstBAI YACGTR 1 cut(s) 731
BstC8I GCNNGC 4 cut(s) 419, 1086, 1097, 1228
BstDEI CTNAG 2 cut(s) 423, 485
BstDSI CCRYGG 2 cut(s) 710, 1161
BstF5I GGATG 1 cut(s) 122
BstFNI CGCG 2 cut(s) 712, 1131
BstHHI GCGC 1 cut(s) 893
BstKTI GATC 4 cut(s) 391, 749, 795, 925
BstMAI GTCTC 2 cut(s) 289, 483
BstMBI GATC 4 cut(s) 388, 746, 792, 922
BstMCI CGRYCG 1 cut(s) 1135
BstMWI GCNNNNNNNGC 7 cut(s) 168, 541, 845, 944, 1010, 1128, 1157
BstNI CCWGG 3 cut(s) 774, 975, 1145
BstNSI RCATGY 1 cut(s) 560
BstSCI CCNGG 3 cut(s) 772, 973, 1143
BstSFI CTRYAG 3 cut(s) 400, 945, 1011
BstUI CGCG 2 cut(s) 712, 1131
BstV1I GCAGC 3 cut(s) 401, 925, 1086
BstV2I GAAGAC 3 cut(s) 183, 471, 1072
BstX2I RGATCY 1 cut(s) 746
BstYI RGATCY 1 cut(s) 746
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 3 cut(s) 588, 848, 986
BtgI CCRYGG 2 cut(s) 710, 1161
BtsCI GGATG 1 cut(s) 122
BtsI GCAGTG 2 cut(s) 893, 942
BtsIMutI CAGTG 4 cut(s) 373, 409, 893, 942
Cac8I GCNNGC 4 cut(s) 419, 1086, 1097, 1228
CfoI GCGC 1 cut(s) 893
Cfr13I GGNCC 2 cut(s) 431, 967
Cfr42I CCGCGG 1 cut(s) 713
CsiI ACCWGGT 1 cut(s) 772
Csp6I GTAC 5 cut(s) 397, 442, 728, 738, 770
CviAII CATG 5 cut(s) 67, 499, 545, 557, 1162
CviQI GTAC 5 cut(s) 397, 442, 728, 738, 770
DdeI CTNAG 2 cut(s) 423, 485
DpnI GATC 4 cut(s) 390, 748, 794, 924
DpnII GATC 4 cut(s) 388, 746, 792, 922
DraI TTTAAA 1 cut(s) 825
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 1161
Eco47I GGWCC 2 cut(s) 431, 967
Eco57I CTGAAG 1 cut(s) 207
Eco81I CCTNAGG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 1106
EcoO109I RGGNCCY 1 cut(s) 967
EcoRII CCWGG 3 cut(s) 772, 973, 1143
EcoT14I CCWWGG 1 cut(s) 1161
ErhI CCWWGG 1 cut(s) 1161
FaeI CATG 5 cut(s) 70, 502, 548, 560, 1165
FaqI GGGAC 2 cut(s) 377, 953
FatI CATG 5 cut(s) 66, 498, 544, 556, 1161
FauI CCCGC 1 cut(s) 90
FauNDI CATATG 1 cut(s) 863
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 4 cut(s) 415, 713, 939, 1100
FokI GGATG 1 cut(s) 129
Fsp4HI GCNGC 4 cut(s) 415, 713, 939, 1100
FspBI CTAG 2 cut(s) 1085, 1140
GlaI GCGC 1 cut(s) 892
GluI GCNGC 4 cut(s) 415, 713, 939, 1100
HaeIII GGCC 3 cut(s) 588, 848, 986
HapII CCGG 3 cut(s) 476, 589, 999
HhaI GCGC 1 cut(s) 893
Hin1II CATG 5 cut(s) 70, 502, 548, 560, 1165
Hin6I GCGC 1 cut(s) 891
HinP1I GCGC 1 cut(s) 891
HinfI GANTC 4 cut(s) 239, 282, 616, 759
HpaII CCGG 3 cut(s) 476, 589, 999
HphI GGTGA 1 cut(s) 797
Hpy166II GTNNAC 6 cut(s) 46, 109, 272, 562, 695, 1027
Hpy188I TCNGA 8 cut(s) 85, 238, 281, 289, 321, 746, 957, 1176
Hpy188III TCNNGA 3 cut(s) 476, 763, 1062
Hpy8I GTNNAC 6 cut(s) 46, 109, 272, 562, 695, 1027
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 859
HpyCH4III ACNGT 5 cut(s) 43, 368, 404, 552, 677
HpyCH4IV ACGT 3 cut(s) 105, 730, 828
HpyCH4V TGCA 7 cut(s) 233, 305, 417, 947, 1013, 1151, 1226
HpyF10VI GCNNNNNNNGC 7 cut(s) 168, 541, 845, 944, 1010, 1128, 1157
HpyF3I CTNAG 2 cut(s) 423, 485
HpySE526I ACGT 3 cut(s) 105, 730, 828
Hsp92II CATG 5 cut(s) 70, 502, 548, 560, 1165
HspAI GCGC 1 cut(s) 891
Kpn2I TCCGGA 1 cut(s) 475
Ksp22I TGATCA 1 cut(s) 922
KspI CCGCGG 1 cut(s) 713
Kzo9I GATC 4 cut(s) 388, 746, 792, 922
LmnI GCTCC 1 cut(s) 1001
Lsp1109I GCAGC 3 cut(s) 401, 925, 1086
LweI GCATC 5 cut(s) 21, 242, 292, 522, 805
MabI ACCWGGT 1 cut(s) 772
MaeI CTAG 2 cut(s) 1085, 1140
MaeII ACGT 3 cut(s) 105, 730, 828
MaeIII GTNAC 6 cut(s) 295, 451, 552, 869, 949, 1125
MalI GATC 4 cut(s) 390, 748, 794, 924
MboI GATC 4 cut(s) 388, 746, 792, 922
MflI RGATCY 1 cut(s) 746
MluCI AATT 6 cut(s) 157, 275, 290, 328, 1055, 1079
MlyI GAGTC 2 cut(s) 291, 610
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 6 cut(s) 79, 88, 646, 976, 1018, 1044
MroI TCCGGA 1 cut(s) 475
MroXI GAANNNNTTC 2 cut(s) 105, 161
MseI TTAA 2 cut(s) 9, 824
MspA1I CMGCKG 1 cut(s) 712
MspI CCGG 3 cut(s) 476, 589, 999
MspR9I CCNGG 3 cut(s) 774, 975, 1145
MssI GTTTAAAC 1 cut(s) 825
MvaI CCWGG 3 cut(s) 774, 975, 1145
MvnI CGCG 2 cut(s) 712, 1131
MwoI GCNNNNNNNGC 7 cut(s) 168, 541, 845, 944, 1010, 1128, 1157
NcoI CCATGG 1 cut(s) 1161
NdeI CATATG 1 cut(s) 863
NdeII GATC 4 cut(s) 388, 746, 792, 922
NheI GCTAGC 1 cut(s) 1084
NlaIII CATG 5 cut(s) 70, 502, 548, 560, 1165
NlaIV GGNNCC 1 cut(s) 969
NmuCI GTSAC 3 cut(s) 451, 949, 1125
NspI RCATGY 1 cut(s) 560
PciI ACATGT 1 cut(s) 556
PdmI GAANNNNTTC 2 cut(s) 105, 161
PfeI GAWTC 2 cut(s) 239, 759
PflFI GACNNNGTC 1 cut(s) 368
PkrI GCNGC 4 cut(s) 416, 714, 940, 1101
PleI GAGTC 2 cut(s) 290, 610
PmeI GTTTAAAC 1 cut(s) 825
PpsI GAGTC 2 cut(s) 290, 610
Ppu21I YACGTR 1 cut(s) 731
PpuMI RGGWCCY 1 cut(s) 967
PscI ACATGT 1 cut(s) 556
Psp1406I AACGTT 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 967
Psp6I CCWGG 3 cut(s) 772, 973, 1143
PspGI CCWGG 3 cut(s) 772, 973, 1143
PspN4I GGNNCC 1 cut(s) 969
PspPI GGNCC 2 cut(s) 431, 967
PspPPI RGGWCCY 1 cut(s) 967
PstI CTGCAG 2 cut(s) 949, 1015
PsuI RGATCY 1 cut(s) 746
PsyI GACNNNGTC 1 cut(s) 368
RsaI GTAC 5 cut(s) 398, 443, 729, 739, 771
RsaNI GTAC 5 cut(s) 397, 442, 728, 738, 770
SacII CCGCGG 1 cut(s) 713
SaqAI TTAA 2 cut(s) 9, 824
SatI GCNGC 4 cut(s) 415, 713, 939, 1100
Sau3AI GATC 4 cut(s) 388, 746, 792, 922
Sau96I GGNCC 2 cut(s) 431, 967
ScaI AGTACT 2 cut(s) 443, 739
SchI GAGTC 2 cut(s) 291, 610
ScrFI CCNGG 3 cut(s) 774, 975, 1145
SexAI ACCWGGT 1 cut(s) 772
SfaNI GCATC 5 cut(s) 21, 242, 292, 522, 805
SfcI CTRYAG 3 cut(s) 400, 945, 1011
Sfr303I CCGCGG 1 cut(s) 713
SgrBI CCGCGG 1 cut(s) 713
SinI GGWCC 2 cut(s) 431, 967
SmlI CTYRAG 1 cut(s) 445
SmoI CTYRAG 1 cut(s) 445
Sse9I AATT 6 cut(s) 157, 275, 290, 328, 1055, 1079
SsiI CCGC 5 cut(s) 97, 114, 710, 712, 1131
SspI AATATT 2 cut(s) 7, 905
SspMI CTAG 2 cut(s) 1085, 1140
StyD4I CCNGG 3 cut(s) 772, 973, 1143
StyI CCWWGG 1 cut(s) 1161
TaaI ACNGT 5 cut(s) 43, 368, 404, 552, 677
TaiI ACGT 3 cut(s) 108, 733, 831
TaqI TCGA 1 cut(s) 1210
TasI AATT 6 cut(s) 157, 275, 290, 328, 1055, 1079
TatI WGTACW 3 cut(s) 396, 441, 737
TauI GCSGC 1 cut(s) 715
TfiI GAWTC 2 cut(s) 239, 759
Tru1I TTAA 2 cut(s) 9, 824
Tru9I TTAA 2 cut(s) 9, 824
TscAI CASTG 4 cut(s) 373, 409, 900, 949
TseFI GTSAC 3 cut(s) 451, 949, 1125
TseI GCWGC 3 cut(s) 414, 938, 1099
Tsp45I GTSAC 3 cut(s) 451, 949, 1125
TspDTI ATGAA 4 cut(s) 17, 207, 561, 1191
TspRI CASTG 4 cut(s) 373, 409, 900, 949
Tth111I GACNNNGTC 1 cut(s) 368
VpaK11BI GGWCC 2 cut(s) 431, 967
XapI RAATTY 1 cut(s) 328
XceI RCATGY 1 cut(s) 560
XcmI CCANNNNNNNNNTGG 1 cut(s) 815
XmnI GAANNNNTTC 2 cut(s) 105, 161
XspI CTAG 2 cut(s) 1085, 1140
ZrmI AGTACT 2 cut(s) 443, 739
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.