Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002322

Physical Location & Seq

Genomic Coordinates Forward (+)

25491366 .. 25531196

Gene Structure 39831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG118200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAAGAGGTCGCGGGCCTTGTCGTCGTTGTCGGAGAATCAGTGCTCATTTAGGTTTCCGATGCAGGTGAGGTGGAGGAAGAGGCGATGGTGGCGATGGTGGCGGTGGAGGAAGGGTGTTTCCGGAGCCGAGCTAGATGTGAGGAAGGGAGTTGCCGGAGCCGAGGCTCGTGAGGTGTCTCAAGTCGAAATTGGAGATCTGAGTGAATCGGAGATGAGTAGAGAATCGTCTCCAGTGAGAGAATCGGAGATGAGTAGAGAATCAGAGAGATCGGAGTTGGACTCCAGTGAGGTAGCTCTGATCAGAGCTTCTTCGTCGACGTCGTCGTCTTCAGGCATCGCGATGCCGTTTCGAGTTGGTGTCTCTAATTCAAATCCCATTGCTTCTGGCTCTGGGGGTTCACAGTTTAGAGTCTCGGAAATGGTAACCGATGCAGATTTGAAGTTTCTGATTGAAAATTTGGATGAGAAGATCGGTCAGAATAAGAAATGGGACAATGTCATAGAGAAAGGAAATGATCTTCTATACTACAGTGCTAAGTGCTGCAAGCCTAAGGTTGGTCTTGTGAAATACTTGAGTGTGACAATATTTGAGGACTGCTCTCCTGAGATGCTGAAAGACTTCTACATGGATAATGATTACAGAAAGCAATGCGATAAAATGCTGATTGAGCATGAACAGTTACATGTGGACAAAAACAATGGGGTTGAAGTTGGCCGGACAATAAAGAAGTTTCCACTAATGACACCTAGAGAATATGTATTAGATTGGAGATTGTGGGAAGGAAAAGATAAAACATTATACTGTTTTGTCAAGGTACCCCTACTGTTTAGTTTTTGGCTCGACGCGGATAGAGGAGTGCAGAGGAGGAAGGGAGAGAAAAGGAGAGTTTGTTTATGCTGTGCCCAGAATAGACCAATAGAAATCGAAGAAGCTAATCCAGGAATTGGATTTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

319

Amino Acids

36.74

Weight (kDa)

8.76

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55960 AT1G55960 AT3G13062 AT3G13062 AT3G13062
fragaria_vesca	FvH4_6g36480 FvH4_6g36480
malus_domestica	MD09G1168600.v1.1 MD10G1168000.v1.1 MD17G1158100.v1.1
prunus_persica	Prupe.3G027000_v2.0.a1
pyrus_communis	pycom09g08630 pycom17g15160
rosa_chinensis	RchiOBHm_Chr1g0356291 RchiOBHm_Chr1g0356301 RchiOBHm_Chr2g0148611
rosa_laevigata	RLG00000020355
rosa_multiflora	Rmu_sc0000048.1_g000024 Rmu_sc0007842.1_g000001 Rmu_ssc0000368.1_g000067
rosa_roxburghii	Rroxscaffold_2G00098580 Rroxscaffold_5G00343750
rosa_rugosa	Rorug02G0303100 Rorug02G0303200 Rorug02G0408100 Rorug05G0283200 Rorug05G0283300
rosa_samantha	Rh2AG466500 Rh2BG479600 Rh2CG453000 Rh2DG488400 Rh3DG124100 Rh4AG089800 Rh4AG118200 Rh4AG189300 Rh4CG097800 Rh5DG503900 Rh6CG162100 Rh6DG153700 Rh7BG309800 Rh7DG365700
rosa_wichuraiana	Rw2G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	55
AasI	GACNNNNNNGTC	1 cut(s)	325
AatII	GACGTC	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	55
Acc65I	GGTACC	1 cut(s)	817
AccB1I	GGYRCC	1 cut(s)	817
AccB7I	CCANNNNNTGG	1 cut(s)	947
AccI	GTMKAC	1 cut(s)	317
AccII	CGCG	3 cut(s)	13, 341, 848
AccIII	TCCGGA	1 cut(s)	122
AciI	CCGC	3 cut(s)	13, 103, 848
AcoI	YGGCCR	1 cut(s)	715
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	315
AcyI	GRCGYC	1 cut(s)	320
AfaI	GTAC	1 cut(s)	819
AfiI	CCNNNNNNNGG	2 cut(s)	557, 947
AflIII	ACRYGT	1 cut(s)	685
AgsI	TTSAA	4 cut(s)	372, 442, 455, 710
AjnI	CCWGG	1 cut(s)	940
AluBI	AGCT	4 cut(s)	133, 296, 308, 935
AluI	AGCT	4 cut(s)	133, 296, 308, 935
Alw21I	GWGCWC	1 cut(s)	47
Alw26I	GTCTC	4 cut(s)	183, 234, 367, 418
Aor13HI	TCCGGA	1 cut(s)	122
AoxI	GGCC	2 cut(s)	15, 715
ApeKI	GCWGC	1 cut(s)	543
ApoI	RAATTY	1 cut(s)	457
Asp700I	GAANNNNTTC	1 cut(s)	620
Asp718I	GGTACC	1 cut(s)	817
AspS9I	GGNCC	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	79
AxyI	CCTNAGG	1 cut(s)	552
BaeGI	GKGCMC	1 cut(s)	907
BanI	GGYRCC	1 cut(s)	817
BauI	CACGAG	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	530
BccI	CCATC	2 cut(s)	81, 90
BceAI	ACGGC	1 cut(s)	331
BciT130I	CCWGG	1 cut(s)	942
BclI	TGATCA	1 cut(s)	300
BcoDI	GTCTC	4 cut(s)	183, 234, 367, 418
BfaI	CTAG	2 cut(s)	134, 750
BfmI	CTRYAG	1 cut(s)	529
BfuAI	ACCTGC	1 cut(s)	55
BglII	AGATCT	1 cut(s)	196
BisI	GCNGC	1 cut(s)	544
BlsI	GCNGC	1 cut(s)	545
Bme1390I	CCNGG	1 cut(s)	942
BmgT120I	GGNCC	1 cut(s)	15
BmiI	GGNNCC	3 cut(s)	127, 160, 819
BmrFI	CCNGG	1 cut(s)	942
BmsI	GCATC	5 cut(s)	51, 333, 345, 421, 600
BpiI	GAAGAC	1 cut(s)	321
BplI	GAGNNNNNCTC	4 cut(s)	266, 298, 584, 616
BpmI	CTGGAG	2 cut(s)	216, 268
BpuEI	CTTGAG	2 cut(s)	165, 595
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 56, 100, 130, 877, 907
Bsc4I	CCNNNNNNNGG	2 cut(s)	557, 947
Bse1I	ACTGG	2 cut(s)	233, 285
Bse21I	CCTNAGG	1 cut(s)	552
Bse3DI	GCAATG	2 cut(s)	378, 656
BseAI	TCCGGA	1 cut(s)	122
BseBI	CCWGG	1 cut(s)	942
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	2 cut(s)	557, 947
BseMI	GCAATG	2 cut(s)	378, 656
BseMII	CTCAG	2 cut(s)	191, 597
BseNI	ACTGG	2 cut(s)	233, 285
BseRI	GAGGAG	2 cut(s)	870, 880
BseSI	GKGCMC	1 cut(s)	907
BseXI	GCAGC	1 cut(s)	530
BsgI	GTGCAG	1 cut(s)	881
Bsh1236I	CGCG	3 cut(s)	13, 341, 848
BshFI	GGCC	2 cut(s)	17, 717
BshNI	GGYRCC	1 cut(s)	817
BsiHKAI	GWGCWC	1 cut(s)	47
BsiSI	CCGG	3 cut(s)	123, 156, 718
BslFI	GGGAC	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	557, 947
BsmAI	GTCTC	4 cut(s)	183, 234, 367, 418
BsmBI	CGTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	17, 717
Bsp1286I	GDGCHC	2 cut(s)	47, 907
Bsp13I	TCCGGA	1 cut(s)	122
Bsp143I	GATC	5 cut(s)	196, 269, 300, 471, 517
Bsp68I	TCGCGA	1 cut(s)	341
BspACI	CCGC	3 cut(s)	13, 103, 848
BspANI	GGCC	2 cut(s)	17, 717
BspCNI	CTCAG	2 cut(s)	192, 598
BspEI	TCCGGA	1 cut(s)	122
BspFNI	CGCG	3 cut(s)	13, 341, 848
BspLI	GGNNCC	3 cut(s)	127, 160, 819
BspMI	ACCTGC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	817
BsrDI	GCAATG	2 cut(s)	378, 656
BsrI	ACTGG	2 cut(s)	233, 285
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	5 cut(s)	196, 269, 300, 471, 517
BssNI	GRCGYC	1 cut(s)	320
BssSI	CACGAG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	942
Bst4CI	ACNGT	5 cut(s)	405, 533, 681, 806, 828
Bst6I	CTCTTC	1 cut(s)	74
BstACI	GRCGYC	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	15, 548
BstDEI	CTNAG	4 cut(s)	200, 537, 552, 606
BstEII	GGTNACC	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	3 cut(s)	13, 341, 848
BstKTI	GATC	5 cut(s)	199, 272, 303, 474, 520
BstMAI	GTCTC	4 cut(s)	183, 234, 367, 418
BstMBI	GATC	5 cut(s)	196, 269, 300, 471, 517
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 100, 670
BstNI	CCWGG	1 cut(s)	942
BstNSI	RCATGY	1 cut(s)	689
BstPI	GGTNACC	1 cut(s)	424
BstSCI	CCNGG	1 cut(s)	940
BstSFI	CTRYAG	1 cut(s)	529
BstSLI	GKGCMC	1 cut(s)	907
BstUI	CGCG	3 cut(s)	13, 341, 848
BstV1I	GCAGC	1 cut(s)	530
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
Bsu36I	CCTNAGG	1 cut(s)	552
BsuRI	GGCC	2 cut(s)	17, 717
BtgZI	GCGATG	4 cut(s)	100, 109, 322, 356
BtsCI	GGATG	1 cut(s)	469
BtsIMutI	CAGTG	4 cut(s)	47, 240, 292, 538
BtuMI	TCGCGA	1 cut(s)	341
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	15, 548
Cfr13I	GGNCC	1 cut(s)	15
CseI	GACGC	1 cut(s)	854
Csp6I	GTAC	1 cut(s)	818
CviAII	CATG	3 cut(s)	628, 674, 686
CviQI	GTAC	1 cut(s)	818
DdeI	CTNAG	4 cut(s)	200, 537, 552, 606
DpnI	GATC	5 cut(s)	198, 271, 302, 473, 519
DpnII	GATC	5 cut(s)	196, 269, 300, 471, 517
DrdI	GACNNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	325
EaeI	YGGCCR	1 cut(s)	715
Eam1104I	CTCTTC	1 cut(s)	74
EarI	CTCTTC	1 cut(s)	74
Eco57I	CTGAAG	1 cut(s)	315
Eco81I	CCTNAGG	1 cut(s)	552
Eco91I	GGTNACC	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	940
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	3 cut(s)	631, 677, 689
FaiI	YATR	8 cut(s)	503, 526, 629, 675, 687, 759, 802, 898
FaqI	GGGAC	1 cut(s)	506
FatI	CATG	3 cut(s)	627, 673, 685
FauI	CCCGC	1 cut(s)	6
FbaI	TGATCA	1 cut(s)	300
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	1 cut(s)	544
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	1 cut(s)	544
FspBI	CTAG	2 cut(s)	134, 750
GluI	GCNGC	1 cut(s)	544
GsuI	CTGGAG	2 cut(s)	216, 268
HaeIII	GGCC	2 cut(s)	17, 717
HapII	CCGG	3 cut(s)	123, 156, 718
HgaI	GACGC	1 cut(s)	854
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	3 cut(s)	631, 677, 689
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	7 cut(s)	37, 206, 224, 242, 260, 281, 411
HpaII	CCGG	3 cut(s)	123, 156, 718
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	3 cut(s)	318, 401, 691
Hpy188III	TCNNGA	4 cut(s)	123, 170, 340, 605
Hpy8I	GTNNAC	3 cut(s)	318, 401, 691
Hpy99I	CGWCG	6 cut(s)	28, 319, 322, 325, 328, 848
HpyAV	CCTTC	4 cut(s)	106, 139, 776, 865
HpyCH4III	ACNGT	5 cut(s)	405, 533, 681, 806, 828
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	4 cut(s)	64, 434, 546, 862
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 100, 670
HpyF3I	CTNAG	4 cut(s)	200, 537, 552, 606
HpySE526I	ACGT	1 cut(s)	320
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	3 cut(s)	631, 677, 689
Kpn2I	TCCGGA	1 cut(s)	122
KpnI	GGTACC	1 cut(s)	821
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	5 cut(s)	196, 269, 300, 471, 517
LmnI	GCTCC	2 cut(s)	125, 158
Lsp1109I	GCAGC	1 cut(s)	530
LweI	GCATC	5 cut(s)	51, 333, 345, 421, 600
MaeI	CTAG	2 cut(s)	134, 750
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	3 cut(s)	424, 580, 681
MalI	GATC	5 cut(s)	198, 271, 302, 473, 519
MboI	GATC	5 cut(s)	196, 269, 300, 471, 517
MboII	GAAGA	7 cut(s)	16, 91, 303, 321, 481, 512, 941
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	2 cut(s)	47, 907
MluCI	AATT	4 cut(s)	189, 367, 457, 945
MlyI	GAGTC	2 cut(s)	275, 420
MmeI	TCCRAC	2 cut(s)	12, 258
MroI	TCCGGA	1 cut(s)	122
MroXI	GAANNNNTTC	1 cut(s)	620
MslI	CAYNNNNRTG	1 cut(s)	341
MspI	CCGG	3 cut(s)	123, 156, 718
MspR9I	CCNGG	1 cut(s)	942
MvaI	CCWGG	1 cut(s)	942
MvnI	CGCG	3 cut(s)	13, 341, 848
MwoI	GCNNNNNNNGC	3 cut(s)	91, 100, 670
NdeII	GATC	5 cut(s)	196, 269, 300, 471, 517
NlaIII	CATG	3 cut(s)	631, 677, 689
NlaIV	GGNNCC	3 cut(s)	127, 160, 819
NmeAIII	GCCGAG	2 cut(s)	154, 187
NmuCI	GTSAC	1 cut(s)	580
NruI	TCGCGA	1 cut(s)	341
NspI	RCATGY	1 cut(s)	689
PaqCI	CACCTGC	1 cut(s)	55
PciI	ACATGT	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	2 cut(s)	320, 323
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	5 cut(s)	37, 206, 224, 242, 260
PflFI	GACNNNGTC	2 cut(s)	322, 497
PflMI	CCANNNNNTGG	1 cut(s)	947
PfoI	TCCNGGA	1 cut(s)	940
PkrI	GCNGC	1 cut(s)	545
PleI	GAGTC	2 cut(s)	275, 419
PpsI	GAGTC	2 cut(s)	275, 419
PscI	ACATGT	1 cut(s)	685
Psp6I	CCWGG	1 cut(s)	940
PspEI	GGTNACC	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	940
PspN4I	GGNNCC	3 cut(s)	127, 160, 819
PspPI	GGNCC	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	196
PsyI	GACNNNGTC	2 cut(s)	322, 497
RruI	TCGCGA	1 cut(s)	341
RsaI	GTAC	1 cut(s)	819
RsaNI	GTAC	1 cut(s)	818
RseI	CAYNNNNRTG	1 cut(s)	341
SalI	GTCGAC	1 cut(s)	316
SatI	GCNGC	1 cut(s)	544
Sau3AI	GATC	5 cut(s)	196, 269, 300, 471, 517
Sau96I	GGNCC	1 cut(s)	15
SchI	GAGTC	2 cut(s)	275, 420
ScrFI	CCNGG	1 cut(s)	942
SduI	GDGCHC	2 cut(s)	47, 907
SfaNI	GCATC	5 cut(s)	51, 333, 345, 421, 600
SfcI	CTRYAG	1 cut(s)	529
SgrDI	CGTCGACG	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	2 cut(s)	180, 574
SmoI	CTYRAG	2 cut(s)	180, 574
Sse9I	AATT	4 cut(s)	189, 367, 457, 945
SsiI	CCGC	3 cut(s)	13, 103, 848
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	2 cut(s)	134, 750
StyD4I	CCNGG	1 cut(s)	940
TaaI	ACNGT	5 cut(s)	405, 533, 681, 806, 828
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	5 cut(s)	186, 317, 352, 843, 927
TaqII	GACCGA	1 cut(s)	464
TasI	AATT	4 cut(s)	189, 367, 457, 945
TfiI	GAWTC	5 cut(s)	37, 206, 224, 242, 260
TscAI	CASTG	4 cut(s)	47, 240, 292, 538
TseFI	GTSAC	1 cut(s)	580
TseI	GCWGC	1 cut(s)	543
Tsp45I	GTSAC	1 cut(s)	580
TspDTI	ATGAA	2 cut(s)	17, 690
TspRI	CASTG	4 cut(s)	47, 240, 292, 538
Tth111I	GACNNNGTC	2 cut(s)	322, 497
Van91I	CCANNNNNTGG	1 cut(s)	947
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	2 cut(s)	134, 750
ZraI	GACGTC	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.