Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007842.1

Orthogroup ID

OG0002322

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1238

Gene Structure 1238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007842.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 467 bp

tacctggtagaaatgcctgcgagatcaaaatgtatcaccaagaagatgctggtttgaacgtggagatggcaaaactggccttcgcaaagggcatatggagttacgtatgtaagatggatagtgcactacgcaaatattctacaatcagcaatgatcaatcaagttctgctgccactgcagtcactttgataaaaaaggctccccctggattagaggccacggataacaatggagcaacctctgcagaacctattattcacagaccaattactggtggggagaggaaattgtcaagaagaccatcaaagaaattgctagccaatggcttgctgcttgtcggtggtctggtctgcctatctcgtggtcgctctagcctgggtgcaaaggttgccatggcatatatcttgaccaaactgaacaagcgtggtgcttcatcaagtcaaaatggggatattgcaggcatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

154

Amino Acids

16.26

Weight (kDa)

9.88

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55960 AT1G55960 AT3G13062 AT3G13062 AT3G13062
fragaria_vesca	FvH4_6g36480 FvH4_6g36480
malus_domestica	MD09G1168600.v1.1 MD10G1168000.v1.1 MD17G1158100.v1.1
prunus_persica	Prupe.3G027000_v2.0.a1
pyrus_communis	pycom09g08630 pycom17g15160
rosa_chinensis	RchiOBHm_Chr1g0356291 RchiOBHm_Chr1g0356301 RchiOBHm_Chr2g0148611
rosa_laevigata	RLG00000020355
rosa_multiflora	Rmu_sc0000048.1_g000024 Rmu_sc0007842.1_g000001 Rmu_ssc0000368.1_g000067
rosa_roxburghii	Rroxscaffold_2G00098580 Rroxscaffold_5G00343750
rosa_rugosa	Rorug02G0303100 Rorug02G0303200 Rorug02G0408100 Rorug05G0283200 Rorug05G0283300
rosa_samantha	Rh2AG466500 Rh2BG479600 Rh2CG453000 Rh2DG488400 Rh3DG124100 Rh4AG089800 Rh4AG118200 Rh4AG189300 Rh4CG097800 Rh5DG503900 Rh6CG162100 Rh6DG153700 Rh7BG309800 Rh7DG365700
rosa_wichuraiana	Rw2G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	1 cut(s)	57
AjnI	CCWGG	3 cut(s)	3, 204, 374
Alw21I	GWGCWC	1 cut(s)	126
Alw44I	GTGCAC	1 cut(s)	122
AoxI	GGCC	2 cut(s)	77, 215
ApaLI	GTGCAC	1 cut(s)	122
ApeKI	GCWGC	2 cut(s)	169, 330
AsuHPI	GGTGA	1 cut(s)	28
AsuNHI	GCTAGC	1 cut(s)	315
BaeGI	GKGCMC	1 cut(s)	126
BauI	CACGAG	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	303
Bbv12I	GWGCWC	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	156, 317
BccI	CCATC	3 cut(s)	60, 108, 309
BciT130I	CCWGG	3 cut(s)	5, 206, 376
BclI	TGATCA	1 cut(s)	153
BfaI	CTAG	2 cut(s)	316, 371
BfmI	CTRYAG	2 cut(s)	176, 242
BisI	GCNGC	2 cut(s)	170, 331
BlsI	GCNGC	2 cut(s)	171, 332
Bme1390I	CCNGG	3 cut(s)	5, 206, 376
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	3 cut(s)	5, 206, 376
BmsI	GCATC	1 cut(s)	36
BmtI	GCTAGC	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	105
BsaJI	CCNNGG	4 cut(s)	204, 218, 375, 392
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	80, 276
Bse3DI	GCAATG	1 cut(s)	156
BseBI	CCWGG	3 cut(s)	5, 206, 376
BseDI	CCNNGG	4 cut(s)	204, 218, 375, 392
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	80, 276
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	156, 317
BshFI	GGCC	2 cut(s)	79, 217
BsiHKAI	GWGCWC	1 cut(s)	126
BslI	CCNNNNNNNGG	1 cut(s)	271
BsnI	GGCC	2 cut(s)	79, 217
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	23, 153
Bsp19I	CCATGG	1 cut(s)	392
BspANI	GGCC	2 cut(s)	79, 217
BspLI	GGNNCC	1 cut(s)	200
BspMAI	CTGCAG	2 cut(s)	180, 246
BspOI	GCTAGC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	80, 276
BssECI	CCNNGG	4 cut(s)	204, 218, 375, 392
BssMI	GATC	2 cut(s)	23, 153
BssSI	CACGAG	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	359
Bst2UI	CCWGG	3 cut(s)	5, 206, 376
BstAPI	GCANNNNNTGC	2 cut(s)	241, 388
BstBAI	YACGTR	1 cut(s)	105
BstC8I	GCNNGC	4 cut(s)	18, 317, 328, 459
BstDSI	CCRYGG	2 cut(s)	218, 392
BstKTI	GATC	2 cut(s)	26, 156
BstMBI	GATC	2 cut(s)	23, 153
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 175, 241, 388
BstNI	CCWGG	3 cut(s)	5, 206, 376
BstSCI	CCNGG	3 cut(s)	3, 204, 374
BstSFI	CTRYAG	2 cut(s)	176, 242
BstSLI	GKGCMC	1 cut(s)	126
BstSNI	TACGTA	1 cut(s)	105
BstV1I	GCAGC	2 cut(s)	156, 317
BstV2I	GAAGAC	1 cut(s)	303
BsuRI	GGCC	2 cut(s)	79, 217
BtgI	CCRYGG	2 cut(s)	218, 392
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	1 cut(s)	173
Cac8I	GCNNGC	4 cut(s)	18, 317, 328, 459
CsiI	ACCWGGT	1 cut(s)	3
CviAII	CATG	1 cut(s)	393
CviJI	RGCY	6 cut(s)	79, 199, 217, 319, 326, 374
CviKI_1	RGCY	6 cut(s)	79, 199, 217, 319, 326, 374
DpnI	GATC	2 cut(s)	25, 155
DpnII	GATC	2 cut(s)	23, 153
Eco105I	TACGTA	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	392
EcoRII	CCWGG	3 cut(s)	3, 204, 374
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	1 cut(s)	396
FaiI	YATR	8 cut(s)	94, 96, 108, 394, 399, 401, 463, 465
FatI	CATG	1 cut(s)	392
FauNDI	CATATG	2 cut(s)	94, 463
FbaI	TGATCA	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	170, 331
Fsp4HI	GCNGC	2 cut(s)	170, 331
FspBI	CTAG	2 cut(s)	316, 371
GluI	GCNGC	2 cut(s)	170, 331
HaeIII	GGCC	2 cut(s)	79, 217
Hin1II	CATG	1 cut(s)	396
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188III	TCNNGA	2 cut(s)	293, 405
Hpy8I	GTNNAC	1 cut(s)	124
HpyAV	CCTTC	1 cut(s)	90
HpyCH4IV	ACGT	2 cut(s)	59, 104
HpyCH4V	TGCA	5 cut(s)	124, 178, 244, 382, 457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 175, 241, 388
HpySE526I	ACGT	2 cut(s)	59, 104
Hsp92II	CATG	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	23, 153
LmnI	GCTCC	2 cut(s)	204, 232
Lsp1109I	GCAGC	2 cut(s)	156, 317
LweI	GCATC	1 cut(s)	36
MabI	ACCWGGT	1 cut(s)	3
MaeI	CTAG	2 cut(s)	316, 371
MaeII	ACGT	2 cut(s)	59, 104
MaeIII	GTNAC	2 cut(s)	100, 180
MalI	GATC	2 cut(s)	25, 155
MboI	GATC	2 cut(s)	23, 153
MboII	GAAGA	2 cut(s)	55, 308
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	3 cut(s)	266, 286, 310
MnlI	CCTC	3 cut(s)	207, 249, 275
MspR9I	CCNGG	3 cut(s)	5, 206, 376
MvaI	CCWGG	3 cut(s)	5, 206, 376
MwoI	GCNNNNNNNGC	4 cut(s)	76, 175, 241, 388
NcoI	CCATGG	1 cut(s)	392
NdeI	CATATG	2 cut(s)	94, 463
NdeII	GATC	2 cut(s)	23, 153
NheI	GCTAGC	1 cut(s)	315
NlaIII	CATG	1 cut(s)	396
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	180
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	2 cut(s)	171, 332
Ppu21I	YACGTR	1 cut(s)	105
Psp6I	CCWGG	3 cut(s)	3, 204, 374
PspGI	CCWGG	3 cut(s)	3, 204, 374
PspN4I	GGNNCC	1 cut(s)	200
PstI	CTGCAG	2 cut(s)	180, 246
SatI	GCNGC	2 cut(s)	170, 331
Sau3AI	GATC	2 cut(s)	23, 153
ScrFI	CCNGG	3 cut(s)	5, 206, 376
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	6 cut(s)	6, 62, 107, 241, 252, 389
SexAI	ACCWGGT	1 cut(s)	3
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	2 cut(s)	176, 242
SnaBI	TACGTA	1 cut(s)	105
Sse9I	AATT	3 cut(s)	266, 286, 310
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	2 cut(s)	316, 371
StyD4I	CCNGG	3 cut(s)	3, 204, 374
StyI	CCWWGG	1 cut(s)	392
TaiI	ACGT	2 cut(s)	62, 107
TasI	AATT	3 cut(s)	266, 286, 310
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	2 cut(s)	169, 330
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	1 cut(s)	422
TspGWI	ACGGA	1 cut(s)	235
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	46
XspI	CTAG	2 cut(s)	316, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.