Rorug02G0303100

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002322
Physical Location & Seq
Forward (+)
33869292 .. 33869991
700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0303100.1

Sequence Viewer

Length: 273 bp
ATGGAGCCACGGAAGGCAGCCTTGAACCTCATGAGTGCGGGCCTCGTTGCAGCACGAGATGCTCAAAGACACAATATAAGAAGCCATGTCTGTTTTTCTGCCAAAAGTGTTGCGCCAAGTGCTTGTGCGTTCCACCCGGCACCTACGGCAACAAGCAATTCTGCCCTTGCTATAACAACTGGAAGACAAAGAGAGGGGGTCCCAAATGCCCTTAATTCAATTAATCCCTTACTTAATTTGTACATGTGTGTAATCTCTCGTATGCATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

90

Amino Acids

9.57

Weight (kDa)

10.3

Isoelectric Point (pI)

59.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 139
AciI CCGC 1 cut(s) 38
AfaI GTAC 1 cut(s) 242
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 2 cut(s) 25, 219
AoxI GGCC 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 17, 50
AseI ATTAAT 1 cut(s) 222
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 2 cut(s) 40, 199
AsuC2I CCSGG 1 cut(s) 137
AvaII GGWCC 1 cut(s) 199
BanI GGYRCC 1 cut(s) 139
BauI CACGAG 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 29, 62
BceAI ACGGC 1 cut(s) 162
BcnI CCSGG 1 cut(s) 137
BisI GCNGC 2 cut(s) 18, 51
BlsI GCNGC 2 cut(s) 19, 52
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 2 cut(s) 40, 199
BmiI GGNNCC 4 cut(s) 6, 141, 200, 201
BmrFI CCNGG 1 cut(s) 137
BmsI GCATC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 190
BpuMI CCSGG 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 8
BseNI ACTGG 1 cut(s) 184
BseXI GCAGC 2 cut(s) 29, 62
BshFI GGCC 1 cut(s) 42
BshNI GGYRCC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 137
BslFI GGGAC 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 185
BsnI GGCC 1 cut(s) 42
Bsp1407I TGTACA 1 cut(s) 240
BspACI CCGC 1 cut(s) 38
BspANI GGCC 1 cut(s) 42
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 4 cut(s) 6, 141, 200, 201
BspT107I GGYRCC 1 cut(s) 139
BsrGI TGTACA 1 cut(s) 240
BsrI ACTGG 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 8
BssSI CACGAG 1 cut(s) 54
Bst2BI CACGAG 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 59
BstAUI TGTACA 1 cut(s) 240
BstC8I GCNNGC 2 cut(s) 40, 267
BstDSI CCRYGG 1 cut(s) 8
BstHHI GCGC 1 cut(s) 115
BstMWI GCNNNNNNNGC 3 cut(s) 59, 119, 146
BstNSI RCATGY 2 cut(s) 247, 269
BstSCI CCNGG 1 cut(s) 135
BstV1I GCAGC 2 cut(s) 29, 62
BstV2I GAAGAC 1 cut(s) 190
BsuRI GGCC 1 cut(s) 42
BtgI CCRYGG 1 cut(s) 8
Cac8I GCNNGC 2 cut(s) 40, 267
CciI TCATGA 1 cut(s) 30
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 40, 199
Csp6I GTAC 1 cut(s) 241
CviAII CATG 4 cut(s) 31, 86, 244, 266
CviJI RGCY 4 cut(s) 7, 20, 42, 84
CviKI_1 RGCY 4 cut(s) 7, 20, 42, 84
CviQI GTAC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 199
EcoO109I RGGNCCY 1 cut(s) 199
EcoT22I ATGCAT 2 cut(s) 267, 271
FaeI CATG 4 cut(s) 34, 89, 247, 269
FaiI YATR 8 cut(s) 32, 77, 87, 173, 245, 263, 267, 271
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 185
FatI CATG 4 cut(s) 30, 85, 243, 265
FauI CCCGC 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 18, 51
Fsp4HI GCNGC 2 cut(s) 18, 51
GlaI GCGC 1 cut(s) 114
GluI GCNGC 2 cut(s) 18, 51
HaeIII GGCC 1 cut(s) 42
HapII CCGG 1 cut(s) 137
HhaI GCGC 1 cut(s) 115
Hin1II CATG 4 cut(s) 34, 89, 247, 269
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HpaII CCGG 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 7
HpyCH4V TGCA 3 cut(s) 50, 265, 269
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 119, 146
Hsp92II CATG 4 cut(s) 34, 89, 247, 269
HspAI GCGC 1 cut(s) 113
KflI GGGWCCC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 2 cut(s) 150, 165
Lsp1109I GCAGC 2 cut(s) 29, 62
LweI GCATC 1 cut(s) 49
MboII GAAGA 1 cut(s) 195
MluCI AATT 4 cut(s) 157, 214, 219, 235
MnlI CCTC 3 cut(s) 38, 53, 187
Mph1103I ATGCAT 2 cut(s) 267, 271
MseI TTAA 3 cut(s) 213, 222, 234
MspI CCGG 1 cut(s) 137
MspR9I CCNGG 1 cut(s) 137
MwoI GCNNNNNNNGC 3 cut(s) 59, 119, 146
NciI CCSGG 1 cut(s) 137
NlaIII CATG 4 cut(s) 34, 89, 247, 269
NlaIV GGNNCC 4 cut(s) 6, 141, 200, 201
NsiI ATGCAT 2 cut(s) 267, 271
NspI RCATGY 2 cut(s) 247, 269
PaeI GCATGC 1 cut(s) 269
PagI TCATGA 1 cut(s) 30
PciI ACATGT 1 cut(s) 243
PkrI GCNGC 2 cut(s) 19, 52
PpuMI RGGWCCY 1 cut(s) 199
PscI ACATGT 1 cut(s) 243
PshBI ATTAAT 1 cut(s) 222
Psp5II RGGWCCY 1 cut(s) 199
PspN4I GGNNCC 4 cut(s) 6, 141, 200, 201
PspPI GGNCC 2 cut(s) 40, 199
PspPPI RGGWCCY 1 cut(s) 199
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
SaqAI TTAA 3 cut(s) 213, 222, 234
SatI GCNGC 2 cut(s) 18, 51
Sau96I GGNCC 2 cut(s) 40, 199
ScrFI CCNGG 1 cut(s) 137
SetI ASST 2 cut(s) 30, 145
SfaNI GCATC 1 cut(s) 49
SinI GGWCC 1 cut(s) 199
SphI GCATGC 1 cut(s) 269
Sse9I AATT 4 cut(s) 157, 214, 219, 235
SsiI CCGC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 135
TasI AATT 4 cut(s) 157, 214, 219, 235
TatI WGTACW 1 cut(s) 240
Tru1I TTAA 3 cut(s) 213, 222, 234
Tru9I TTAA 3 cut(s) 213, 222, 234
TseI GCWGC 2 cut(s) 17, 50
TspGWI ACGGA 1 cut(s) 25
VpaK11BI GGWCC 1 cut(s) 199
VspI ATTAAT 1 cut(s) 222
XceI RCATGY 2 cut(s) 247, 269
Zsp2I ATGCAT 2 cut(s) 267, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.