Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002322

Physical Location & Seq

Genomic Coordinates Reverse (-)

1999484 .. 2004200

Gene Structure 4717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G027000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGAGCCTCTATAACTATGCGATTAGCGAACAAGAGAATAGCAAAGAAACAACAGAGATGGTGAAAATCGTGGATTTGAGGAGAGTTCACGGCATGTTCCAAGGATCATCGGAGGAATTTTGGCGGGAAAATGTTTATGGCGGTTTGGCGACTCTTGTCGCTCTTCTTTTCGTCTTGGCTTGGCACTGTGCCAAGAGGTTCGTCTTTAGGAAATCCTCTTCCTCCAAGTCTTCTCCAGTTGGTGTCTCAAATTCTGATCCAACCAGTTCTGGGTTCAGCATCTCGGAAATGGTCACAGATGCAGATTTGAAGTTTCTAATTGAAAATTTGGAGGAAAAGACCCGTGAAAATGAGAAATGGGACAATGTCATAGAGAAAAGAAATGATCTTCTATCCTACTATGCTAAATGCTGCAAACCTAAGGATGGCCCTGTGAAATACTTGAGCTCAACAATATTTGAGAATTGCTCTCCTGAGAAGCTGAGAGACTTCTACATGGACAATGATTACAGAAAGCAATGGGACAAGATGCTGATTGAGCATGAGCAGTTACAGGTGGACAAAAACAAGGGGGTTGAAGTTGGTCGGTCAATAAAAAAGTTTCCATTGTTGACAGCCAGAGAATATGTATTAGCTTGGAGGTTGTGGGAGGGGAAAGATAATACATTCTACTGTTTTATCAAGGAATGTGAACATCCTTTGGCACCACTCCAGAAGAAGTATGTGCGTGTTAGTATTTTCAGATCTGGTTGGCAAATCAGAAAAGTGCCTGGTAGAAATGCCTGTGAAATCAAAATGTTTCACCAAGAAGATGCTGGTTTAAATGTGGAGATGGCAAAATTAGCTTTTTCCAGGGGCATATGGAGTTATGTATGTAAGATGGATACTGCACTTCGCAGATATTCCACAATCAGCAATCATCAGTTAAGTTCTGGTGCTACTGCTGTCACTTTGATTAAAAAGGTTCCCCCTGGATTGGAAGCCACAGATAGCATGACTTCTCAAGAAAACTCTGCAGCAACTTCTGTTCACAGACCAATCGCTGGTGGGGGGAGGAAATTGTCAAGAACACCATCAAAGAAATTGCTTGCCAATGGCTTGCTGATTCTTGGGGGTGTGGTCTGCTTGTCTCGTGGTCACTCTAGCCTAGGTGCTAAAGTTGCCATGGCGTACATCTTAACCAAACTGAGTAAGCGTGGTGCGTCTTCAAGTGAAAGCAGCCCAAGTTCAGGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

START

Protein Analysis

413

Amino Acids

46.33

Weight (kDa)

9.28

Isoelectric Point (pI)

53.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55960 AT1G55960 AT3G13062 AT3G13062 AT3G13062
fragaria_vesca	FvH4_6g36480 FvH4_6g36480
malus_domestica	MD09G1168600.v1.1 MD10G1168000.v1.1 MD17G1158100.v1.1
prunus_persica	Prupe.3G027000_v2.0.a1
pyrus_communis	pycom09g08630 pycom17g15160
rosa_chinensis	RchiOBHm_Chr1g0356291 RchiOBHm_Chr1g0356301 RchiOBHm_Chr2g0148611
rosa_laevigata	RLG00000020355
rosa_multiflora	Rmu_sc0000048.1_g000024 Rmu_sc0007842.1_g000001 Rmu_ssc0000368.1_g000067
rosa_roxburghii	Rroxscaffold_2G00098580 Rroxscaffold_5G00343750
rosa_rugosa	Rorug02G0303100 Rorug02G0303200 Rorug02G0408100 Rorug05G0283200 Rorug05G0283300
rosa_samantha	Rh2AG466500 Rh2BG479600 Rh2CG453000 Rh2DG488400 Rh3DG124100 Rh4AG089800 Rh4AG118200 Rh4AG189300 Rh4CG097800 Rh5DG503900 Rh6CG162100 Rh6DG153700 Rh7BG309800 Rh7DG365700
rosa_wichuraiana	Rw2G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	703
AccB7I	CCANNNNNTGG	1 cut(s)	1043
AciI	CCGC	2 cut(s)	124, 141
AclWI	GGATC	2 cut(s)	112, 251
AcsI	RAATTY	3 cut(s)	116, 250, 325
AfaI	GTAC	1 cut(s)	1172
AfiI	CCNNNNNNNGG	5 cut(s)	270, 425, 976, 1043, 1229
AgsI	TTSAA	4 cut(s)	310, 323, 578, 1209
AjnI	CCWGG	3 cut(s)	769, 851, 970
AluBI	AGCT	4 cut(s)	447, 481, 635, 845
AluI	AGCT	4 cut(s)	447, 481, 635, 845
Alw21I	GWGCWC	1 cut(s)	449
Alw26I	GTCTC	3 cut(s)	250, 480, 1134
AlwI	GGATC	2 cut(s)	112, 251
AoxI	GGCC	1 cut(s)	427
ApeKI	GCWGC	3 cut(s)	411, 1016, 1218
ApoI	RAATTY	3 cut(s)	116, 250, 325
AspA2I	CCTAGG	1 cut(s)	1147
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	2 cut(s)	73, 794
AvrII	CCTAGG	1 cut(s)	1147
AxyI	CCTNAGG	1 cut(s)	420
BanI	GGYRCC	1 cut(s)	703
BanII	GRGCYC	1 cut(s)	449
BauI	CACGAG	1 cut(s)	1131
BbsI	GAAGAC	2 cut(s)	222, 1197
Bbv12I	GWGCWC	1 cut(s)	449
BbvI	GCAGC	3 cut(s)	398, 1028, 1230
BccI	CCATC	5 cut(s)	52, 419, 826, 874, 1081
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	3 cut(s)	771, 853, 972
BciVI	GTATCC	1 cut(s)	877
BcoDI	GTCTC	3 cut(s)	250, 480, 1134
BfaI	CTAG	2 cut(s)	1143, 1148
BfmI	CTRYAG	1 cut(s)	1014
BfuI	GTATCC	1 cut(s)	877
BglII	AGATCT	1 cut(s)	743
BisI	GCNGC	3 cut(s)	412, 1017, 1219
BlnI	CCTAGG	1 cut(s)	1147
BlsI	GCNGC	3 cut(s)	413, 1018, 1220
Bme1390I	CCNGG	3 cut(s)	771, 853, 972
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	705, 966
BmrFI	CCNGG	3 cut(s)	771, 853, 972
BmsI	GCATC	4 cut(s)	288, 289, 519, 802
BoxI	GACNNNNGTC	1 cut(s)	155
BpiI	GAAGAC	2 cut(s)	222, 1197
BplI	GAGNNNNNCTC	2 cut(s)	452, 484
BpmI	CTGGAG	2 cut(s)	219, 695
BpuEI	CTTGAG	2 cut(s)	463, 987
BsaJI	CCNNGG	5 cut(s)	100, 852, 970, 1147, 1164
Bsc4I	CCNNNNNNNGG	5 cut(s)	270, 425, 976, 1043, 1229
Bse1I	ACTGG	2 cut(s)	236, 264
Bse21I	CCTNAGG	1 cut(s)	420
Bse3DI	GCAATG	1 cut(s)	524
BseBI	CCWGG	3 cut(s)	771, 853, 972
BseDI	CCNNGG	5 cut(s)	100, 852, 970, 1147, 1164
BseGI	GGATG	2 cut(s)	430, 694
BseLI	CCNNNNNNNGG	5 cut(s)	270, 425, 976, 1043, 1229
BseMI	GCAATG	1 cut(s)	524
BseMII	CTCAG	3 cut(s)	465, 473, 1178
BseNI	ACTGG	2 cut(s)	236, 264
BseRI	GAGGAG	1 cut(s)	94
BseXI	GCAGC	3 cut(s)	398, 1028, 1230
BsgI	GTGCAG	1 cut(s)	873
BshFI	GGCC	1 cut(s)	429
BshNI	GGYRCC	1 cut(s)	703
BsiHKAI	GWGCWC	1 cut(s)	449
BslFI	GGGAC	2 cut(s)	374, 536
BslI	CCNNNNNNNGG	5 cut(s)	270, 425, 976, 1043, 1229
BsmAI	GTCTC	3 cut(s)	250, 480, 1134
BsmFI	GGGAC	2 cut(s)	374, 536
BsnI	GGCC	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	449
Bsp143I	GATC	4 cut(s)	104, 256, 385, 743
Bsp19I	CCATGG	1 cut(s)	1164
BspACI	CCGC	2 cut(s)	124, 141
BspANI	GGCC	1 cut(s)	429
BspCNI	CTCAG	3 cut(s)	466, 474, 1179
BspLI	GGNNCC	2 cut(s)	705, 966
BspMAI	CTGCAG	1 cut(s)	1018
BspPI	GGATC	2 cut(s)	112, 251
BspQI	GCTCTTC	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	703
BsrDI	GCAATG	1 cut(s)	524
BsrI	ACTGG	2 cut(s)	236, 264
BssECI	CCNNGG	5 cut(s)	100, 852, 970, 1147, 1164
BssMI	GATC	4 cut(s)	104, 256, 385, 743
BssSI	CACGAG	1 cut(s)	1131
BssT1I	CCWWGG	3 cut(s)	100, 1147, 1164
Bst2BI	CACGAG	1 cut(s)	1131
Bst2UI	CCWGG	3 cut(s)	771, 853, 972
Bst4CI	ACNGT	2 cut(s)	188, 674
Bst6I	CTCTTC	2 cut(s)	168, 223
BstC8I	GCNNGC	2 cut(s)	1089, 1100
BstDEI	CTNAG	4 cut(s)	420, 474, 482, 1187
BstDSI	CCRYGG	1 cut(s)	1164
BstF5I	GGATG	2 cut(s)	430, 694
BstKTI	GATC	4 cut(s)	107, 259, 388, 746
BstMAI	GTCTC	3 cut(s)	250, 480, 1134
BstMBI	GATC	4 cut(s)	104, 256, 385, 743
BstMWI	GCNNNNNNNGC	3 cut(s)	538, 842, 1160
BstNI	CCWGG	3 cut(s)	771, 853, 972
BstNSI	RCATGY	1 cut(s)	97
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSCI	CCNGG	3 cut(s)	769, 851, 970
BstSFI	CTRYAG	1 cut(s)	1014
BstV1I	GCAGC	3 cut(s)	398, 1028, 1230
BstV2I	GAAGAC	2 cut(s)	222, 1197
BstX2I	RGATCY	1 cut(s)	743
BstYI	RGATCY	1 cut(s)	743
Bsu36I	CCTNAGG	1 cut(s)	420
BsuI	GTATCC	1 cut(s)	877
BsuRI	GGCC	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	1164
BtsCI	GGATG	2 cut(s)	430, 694
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	1089, 1100
Cfr13I	GGNCC	1 cut(s)	428
CseI	GACGC	1 cut(s)	1191
Csp6I	GTAC	1 cut(s)	1171
CviAII	CATG	6 cut(s)	94, 496, 542, 994, 1165, 1236
CviQI	GTAC	1 cut(s)	1171
DdeI	CTNAG	4 cut(s)	420, 474, 482, 1187
DpnI	GATC	4 cut(s)	106, 258, 387, 745
DpnII	GATC	4 cut(s)	104, 256, 385, 743
DraI	TTTAAA	1 cut(s)	822
Eam1104I	CTCTTC	2 cut(s)	168, 223
EarI	CTCTTC	2 cut(s)	168, 223
Ecl136II	GAGCTC	1 cut(s)	447
Eco130I	CCWWGG	3 cut(s)	100, 1147, 1164
Eco24I	GRGCYC	1 cut(s)	449
Eco53kI	GAGCTC	1 cut(s)	447
Eco81I	CCTNAGG	1 cut(s)	420
EcoICRI	GAGCTC	1 cut(s)	447
EcoRII	CCWGG	3 cut(s)	769, 851, 970
EcoT14I	CCWWGG	3 cut(s)	100, 1147, 1164
EcoT38I	GRGCYC	1 cut(s)	449
ErhI	CCWWGG	3 cut(s)	100, 1147, 1164
FaeI	CATG	6 cut(s)	97, 499, 545, 997, 1168, 1239
FaqI	GGGAC	2 cut(s)	374, 536
FatI	CATG	6 cut(s)	93, 495, 541, 993, 1164, 1235
FauI	CCCGC	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	860
Fnu4HI	GCNGC	3 cut(s)	412, 1017, 1219
FokI	GGATG	2 cut(s)	437, 681
FriOI	GRGCYC	1 cut(s)	449
Fsp4HI	GCNGC	3 cut(s)	412, 1017, 1219
FspBI	CTAG	2 cut(s)	1143, 1148
GluI	GCNGC	3 cut(s)	412, 1017, 1219
GsuI	CTGGAG	2 cut(s)	219, 695
HaeIII	GGCC	1 cut(s)	429
HgaI	GACGC	1 cut(s)	1191
Hin1II	CATG	6 cut(s)	97, 499, 545, 997, 1168, 1239
HincII	GTYRAC	1 cut(s)	612
HindII	GTYRAC	1 cut(s)	612
HinfI	GANTC	2 cut(s)	151, 1105
HphI	GGTGA	2 cut(s)	73, 794
Hpy166II	GTNNAC	5 cut(s)	88, 559, 612, 692, 1030
Hpy188I	TCNGA	5 cut(s)	112, 256, 286, 743, 761
Hpy188III	TCNNGA	4 cut(s)	473, 712, 1004, 1065
Hpy8I	GTNNAC	5 cut(s)	88, 559, 612, 692, 1030
HpyCH4III	ACNGT	2 cut(s)	188, 674
HpyCH4V	TGCA	5 cut(s)	302, 414, 890, 1016, 1235
HpyF10VI	GCNNNNNNNGC	3 cut(s)	538, 842, 1160
HpyF3I	CTNAG	4 cut(s)	420, 474, 482, 1187
Hsp92II	CATG	6 cut(s)	97, 499, 545, 997, 1168, 1239
Kzo9I	GATC	4 cut(s)	104, 256, 385, 743
LguI	GCTCTTC	1 cut(s)	168
Lsp1109I	GCAGC	3 cut(s)	398, 1028, 1230
LweI	GCATC	4 cut(s)	288, 289, 519, 802
MaeI	CTAG	2 cut(s)	1143, 1148
MaeIII	GTNAC	4 cut(s)	292, 549, 946, 1136
MalI	GATC	4 cut(s)	106, 258, 387, 745
MboI	GATC	4 cut(s)	104, 256, 385, 743
MboII	GAAGA	7 cut(s)	155, 210, 222, 380, 727, 821, 1197
MflI	RGATCY	1 cut(s)	743
MhlI	GDGCHC	1 cut(s)	449
MluCI	AATT	8 cut(s)	116, 250, 318, 325, 463, 839, 1058, 1082
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	284
MseI	TTAA	4 cut(s)	821, 926, 957, 1178
MspR9I	CCNGG	3 cut(s)	771, 853, 972
MvaI	CCWGG	3 cut(s)	771, 853, 972
MwoI	GCNNNNNNNGC	3 cut(s)	538, 842, 1160
NcoI	CCATGG	1 cut(s)	1164
NdeI	CATATG	1 cut(s)	860
NdeII	GATC	4 cut(s)	104, 256, 385, 743
NlaIII	CATG	6 cut(s)	97, 499, 545, 997, 1168, 1239
NlaIV	GGNNCC	2 cut(s)	705, 966
NmuCI	GTSAC	3 cut(s)	292, 946, 1136
NspI	RCATGY	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	1105
PflFI	GACNNNGTC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	1043
PkrI	GCNGC	3 cut(s)	413, 1018, 1220
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PshAI	GACNNNNGTC	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	449
Psp6I	CCWGG	3 cut(s)	769, 851, 970
PspGI	CCWGG	3 cut(s)	769, 851, 970
PspN4I	GGNNCC	2 cut(s)	705, 966
PspPI	GGNCC	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	1018
PsuI	RGATCY	1 cut(s)	743
PsyI	GACNNNGTC	1 cut(s)	365
RsaI	GTAC	1 cut(s)	1172
RsaNI	GTAC	1 cut(s)	1171
SacI	GAGCTC	1 cut(s)	449
SapI	GCTCTTC	1 cut(s)	168
SaqAI	TTAA	4 cut(s)	821, 926, 957, 1178
SatI	GCNGC	3 cut(s)	412, 1017, 1219
Sau3AI	GATC	4 cut(s)	104, 256, 385, 743
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	3 cut(s)	771, 853, 972
SduI	GDGCHC	1 cut(s)	449
SfaNI	GCATC	4 cut(s)	288, 289, 519, 802
SfcI	CTRYAG	1 cut(s)	1014
SmlI	CTYRAG	2 cut(s)	442, 1002
SmoI	CTYRAG	2 cut(s)	442, 1002
Sse9I	AATT	8 cut(s)	116, 250, 318, 325, 463, 839, 1058, 1082
SsiI	CCGC	2 cut(s)	124, 141
SspI	AATATT	1 cut(s)	456
SspMI	CTAG	2 cut(s)	1143, 1148
SstI	GAGCTC	1 cut(s)	449
StyD4I	CCNGG	3 cut(s)	769, 851, 970
StyI	CCWWGG	3 cut(s)	100, 1147, 1164
TaaI	ACNGT	2 cut(s)	188, 674
TaqII	GACCGA	1 cut(s)	576
TasI	AATT	8 cut(s)	116, 250, 318, 325, 463, 839, 1058, 1082
TfiI	GAWTC	1 cut(s)	1105
Tru1I	TTAA	4 cut(s)	821, 926, 957, 1178
Tru9I	TTAA	4 cut(s)	821, 926, 957, 1178
TscAI	CASTG	1 cut(s)	191
TseFI	GTSAC	3 cut(s)	292, 946, 1136
TseI	GCWGC	3 cut(s)	411, 1016, 1218
Tsp45I	GTSAC	3 cut(s)	292, 946, 1136
TspRI	CASTG	1 cut(s)	191
Tth111I	GACNNNGTC	1 cut(s)	365
Van91I	CCANNNNNTGG	1 cut(s)	1043
XapI	RAATTY	3 cut(s)	116, 250, 325
XceI	RCATGY	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	812
XmaJI	CCTAGG	1 cut(s)	1147
XspI	CTAG	2 cut(s)	1143, 1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.