Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002322

Physical Location & Seq

Genomic Coordinates Reverse (-)

17734763 .. 17755946

Gene Structure 21184 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG097800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGAGTTCCTGCCTTCCTGGTTTCTGCCCTTGTCGTTGAGGGTTCAAGAGTCAAGCAAGACATGGCTTGAAGCCTTGAAGCAGGTTTCTGGCTGCATACGGCGGCTAGCACACCACACACATCACTATCATAAAAGGATCAAAATTCAGAACGTGTTATTGCGCTCAGATACATGCAGAGTACATGCAATTAGAAACTCCTCGCTCAGCGTCCTCGGAGTCTCGGAAATGGTAACAGATGCAGATTTGAAGTTTCTGATTGAAAATTTGGACGAGAAGATCGGTCAGAATAAGAAATGGGACAATGTCATAGAGAAAGGAAATGATCTTCTATACTACAGTGCTAAGTGCTGCAAGCCTAAGGTTGGTCCTGTGAAATACTTGATTGGCCGGACAATAAAGAAGTTTCCACTGTTGACACCTAGAGAATATGTATTAGCTTGGAGATTGTGGGAAGGAAAAGATAAAACATTCTACTGTTTTGTCAAGAAGAAGTATGTGCGTGTTGGTACTTTCAGATCTGGTTGGCGAATTAGAAAAGTACCTGGTAGAAATGCCTGCGAGATCAAAATGTATCACCAAGAAGATGCTGGTTTAAACGTGGAGATGGCAAAACTGGCCTTCGCGAAGGGCATATGGAGTTACGTATGTAAGATGGATAGTGCACTACGCAAATATTCTGCAATTAGCAATGATCAATCAAGTTCTGCTACCACTGCAATCACTTTGATAAAAAAGGTCCCCCCTGGATTAGAGGCGACGGATAGCAATGGAGCAACCTCTGTAGAACCCAATGTTCAGAGTCTTAAATTGTTGTTGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

274

Amino Acids

31.32

Weight (kDa)

9.7

Isoelectric Point (pI)

45.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002322)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55960 AT1G55960 AT3G13062 AT3G13062 AT3G13062
fragaria_vesca	FvH4_6g36480 FvH4_6g36480
malus_domestica	MD09G1168600.v1.1 MD10G1168000.v1.1 MD17G1158100.v1.1
prunus_persica	Prupe.3G027000_v2.0.a1
pyrus_communis	pycom09g08630 pycom17g15160
rosa_chinensis	RchiOBHm_Chr1g0356291 RchiOBHm_Chr1g0356301 RchiOBHm_Chr2g0148611
rosa_laevigata	RLG00000020355
rosa_multiflora	Rmu_sc0000048.1_g000024 Rmu_sc0007842.1_g000001 Rmu_ssc0000368.1_g000067
rosa_roxburghii	Rroxscaffold_2G00098580 Rroxscaffold_5G00343750
rosa_rugosa	Rorug02G0303100 Rorug02G0303200 Rorug02G0408100 Rorug05G0283200 Rorug05G0283300
rosa_samantha	Rh2AG466500 Rh2BG479600 Rh2CG453000 Rh2DG488400 Rh3DG124100 Rh4AG089800 Rh4AG118200 Rh4AG189300 Rh4CG097800 Rh5DG503900 Rh6CG162100 Rh6DG153700 Rh7BG309800 Rh7DG365700
rosa_wichuraiana	Rw2G038040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	73
AccII	CGCG	1 cut(s)	626
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	144, 265
AfaI	GTAC	3 cut(s)	183, 511, 543
AfiI	CCNNNNNNNGG	1 cut(s)	365
AflIII	ACRYGT	1 cut(s)	153
AgsI	TTSAA	5 cut(s)	47, 71, 79, 250, 263
AjnI	CCWGG	3 cut(s)	17, 544, 745
AluBI	AGCT	1 cut(s)	440
AluI	AGCT	1 cut(s)	440
Alw21I	GWGCWC	1 cut(s)	667
Alw26I	GTCTC	1 cut(s)	226
Alw44I	GTGCAC	1 cut(s)	663
AlwI	GGATC	1 cut(s)	146
AoxI	GGCC	2 cut(s)	388, 618
ApaLI	GTGCAC	1 cut(s)	663
ApeKI	GCWGC	2 cut(s)	93, 351
ApoI	RAATTY	2 cut(s)	144, 265
AspLEI	GCGC	1 cut(s)	165
AspS9I	GGNCC	2 cut(s)	368, 739
AsuHPI	GGTGA	1 cut(s)	569
AsuNHI	GCTAGC	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	368, 739
AxyI	CCTNAGG	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	667
Bbv12I	GWGCWC	1 cut(s)	667
BbvI	GCAGC	2 cut(s)	80, 338
BccI	CCATC	2 cut(s)	601, 649
BceAI	ACGGC	1 cut(s)	116
BciT130I	CCWGG	3 cut(s)	19, 546, 747
BclI	TGATCA	1 cut(s)	694
BcoDI	GTCTC	1 cut(s)	226
BfaI	CTAG	2 cut(s)	107, 423
BfmI	CTRYAG	2 cut(s)	337, 783
BfuAI	ACCTGC	1 cut(s)	73
BglII	AGATCT	1 cut(s)	518
BisI	GCNGC	3 cut(s)	94, 104, 352
BlpI	GCTNAGC	1 cut(s)	206
BlsI	GCNGC	3 cut(s)	95, 105, 353
Bme1390I	CCNGG	3 cut(s)	19, 546, 747
Bme18I	GGWCC	2 cut(s)	368, 739
BmgT120I	GGNCC	2 cut(s)	368, 739
BmiI	GGNNCC	1 cut(s)	741
BmrFI	CCNGG	3 cut(s)	19, 546, 747
BmsI	GCATC	2 cut(s)	229, 577
BmtI	GCTAGC	1 cut(s)	110
Bpu1102I	GCTNAGC	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	646
BsaJI	CCNNGG	2 cut(s)	214, 745
Bsc4I	CCNNNNNNNGG	1 cut(s)	365
Bse1I	ACTGG	1 cut(s)	621
Bse21I	CCTNAGG	1 cut(s)	360
Bse3DI	GCAATG	2 cut(s)	697, 775
BseBI	CCWGG	3 cut(s)	19, 546, 747
BseDI	CCNNGG	2 cut(s)	214, 745
BseLI	CCNNNNNNNGG	1 cut(s)	365
BseMI	GCAATG	2 cut(s)	697, 775
BseMII	CTCAG	2 cut(s)	180, 220
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	667
BseXI	GCAGC	2 cut(s)	80, 338
Bsh1236I	CGCG	1 cut(s)	626
BshFI	GGCC	2 cut(s)	390, 620
BsiHKAI	GWGCWC	1 cut(s)	667
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	2 cut(s)	314, 725
BslI	CCNNNNNNNGG	1 cut(s)	365
BsmAI	GTCTC	1 cut(s)	226
BsmFI	GGGAC	2 cut(s)	314, 725
BsnI	GGCC	2 cut(s)	390, 620
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	6 cut(s)	138, 279, 325, 518, 564, 694
Bsp1720I	GCTNAGC	1 cut(s)	206
Bsp68I	TCGCGA	1 cut(s)	626
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	2 cut(s)	390, 620
BspCNI	CTCAG	2 cut(s)	179, 219
BspFNI	CGCG	1 cut(s)	626
BspLI	GGNNCC	1 cut(s)	741
BspMI	ACCTGC	1 cut(s)	73
BspOI	GCTAGC	1 cut(s)	110
BspPI	GGATC	1 cut(s)	146
BsrDI	GCAATG	2 cut(s)	697, 775
BsrI	ACTGG	1 cut(s)	621
BssECI	CCNNGG	2 cut(s)	214, 745
BssMI	GATC	6 cut(s)	138, 279, 325, 518, 564, 694
Bst2UI	CCWGG	3 cut(s)	19, 546, 747
Bst4CI	ACNGT	3 cut(s)	341, 414, 479
BstBAI	YACGTR	1 cut(s)	646
BstC8I	GCNNGC	3 cut(s)	108, 356, 559
BstDEI	CTNAG	4 cut(s)	166, 206, 345, 360
BstFNI	CGCG	1 cut(s)	626
BstHHI	GCGC	1 cut(s)	165
BstKTI	GATC	6 cut(s)	141, 282, 328, 521, 567, 697
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	6 cut(s)	138, 279, 325, 518, 564, 694
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 716
BstNI	CCWGG	3 cut(s)	19, 546, 747
BstNSI	RCATGY	2 cut(s)	177, 188
BstSCI	CCNGG	3 cut(s)	17, 544, 745
BstSFI	CTRYAG	2 cut(s)	337, 783
BstSLI	GKGCMC	1 cut(s)	667
BstSNI	TACGTA	1 cut(s)	646
BstUI	CGCG	1 cut(s)	626
BstV1I	GCAGC	2 cut(s)	80, 338
BstX2I	RGATCY	1 cut(s)	518
BstYI	RGATCY	1 cut(s)	518
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	390, 620
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	3 cut(s)	346, 410, 714
BtuMI	TCGCGA	1 cut(s)	626
BveI	ACCTGC	1 cut(s)	73
Cac8I	GCNNGC	3 cut(s)	108, 356, 559
CfoI	GCGC	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	368, 739
CseI	GACGC	1 cut(s)	199
CsiI	ACCWGGT	1 cut(s)	544
Csp6I	GTAC	3 cut(s)	182, 510, 542
CviAII	CATG	3 cut(s)	63, 174, 185
CviJI	RGCY	8 cut(s)	67, 74, 93, 106, 358, 390, 440, 620
CviKI_1	RGCY	8 cut(s)	67, 74, 93, 106, 358, 390, 440, 620
CviQI	GTAC	3 cut(s)	182, 510, 542
DdeI	CTNAG	4 cut(s)	166, 206, 345, 360
DpnI	GATC	6 cut(s)	140, 281, 327, 520, 566, 696
DpnII	GATC	6 cut(s)	138, 279, 325, 518, 564, 694
DraI	TTTAAA	1 cut(s)	597
EaeI	YGGCCR	1 cut(s)	388
Eco105I	TACGTA	1 cut(s)	646
Eco47I	GGWCC	2 cut(s)	368, 739
Eco81I	CCTNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	739
EcoRII	CCWGG	3 cut(s)	17, 544, 745
FaeI	CATG	3 cut(s)	66, 177, 188
FaqI	GGGAC	2 cut(s)	314, 725
FatI	CATG	3 cut(s)	62, 173, 184
FauNDI	CATATG	1 cut(s)	635
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	3 cut(s)	94, 104, 352
Fsp4HI	GCNGC	3 cut(s)	94, 104, 352
FspBI	CTAG	2 cut(s)	107, 423
GlaI	GCGC	1 cut(s)	164
GluI	GCNGC	3 cut(s)	94, 104, 352
HaeIII	GGCC	2 cut(s)	390, 620
HapII	CCGG	1 cut(s)	391
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	1 cut(s)	165
Hin1II	CATG	3 cut(s)	66, 177, 188
Hin6I	GCGC	1 cut(s)	163
HinP1I	GCGC	1 cut(s)	163
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HinfI	GANTC	3 cut(s)	50, 219, 802
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	2 cut(s)	417, 665
Hpy188I	TCNGA	8 cut(s)	150, 169, 218, 226, 258, 288, 518, 801
Hpy188III	TCNNGA	3 cut(s)	47, 487, 625
Hpy8I	GTNNAC	2 cut(s)	417, 665
Hpy99I	CGWCG	1 cut(s)	763
HpyAV	CCTTC	4 cut(s)	24, 449, 622, 631
HpyCH4III	ACNGT	3 cut(s)	341, 414, 479
HpyCH4IV	ACGT	3 cut(s)	153, 600, 645
HpyCH4V	TGCA	9 cut(s)	96, 177, 188, 242, 354, 665, 683, 719, 820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 716
HpyF3I	CTNAG	4 cut(s)	166, 206, 345, 360
HpySE526I	ACGT	3 cut(s)	153, 600, 645
Hsp92II	CATG	3 cut(s)	66, 177, 188
HspAI	GCGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	6 cut(s)	138, 279, 325, 518, 564, 694
LmnI	GCTCC	1 cut(s)	773
Lsp1109I	GCAGC	2 cut(s)	80, 338
LweI	GCATC	2 cut(s)	229, 577
MabI	ACCWGGT	1 cut(s)	544
MaeI	CTAG	2 cut(s)	107, 423
MaeII	ACGT	3 cut(s)	153, 600, 645
MaeIII	GTNAC	2 cut(s)	232, 641
MalI	GATC	6 cut(s)	140, 281, 327, 520, 566, 696
MboI	GATC	6 cut(s)	138, 279, 325, 518, 564, 694
MboII	GAAGA	4 cut(s)	289, 320, 502, 596
MflI	RGATCY	1 cut(s)	518
MhlI	GDGCHC	1 cut(s)	667
MluCI	AATT	6 cut(s)	144, 189, 265, 531, 684, 809
MlyI	GAGTC	3 cut(s)	59, 228, 811
MnlI	CCTC	5 cut(s)	33, 211, 224, 748, 790
MseI	TTAA	2 cut(s)	596, 807
MspI	CCGG	1 cut(s)	391
MspR9I	CCNGG	3 cut(s)	19, 546, 747
MssI	GTTTAAAC	1 cut(s)	597
MvaI	CCWGG	3 cut(s)	19, 546, 747
MvnI	CGCG	1 cut(s)	626
MwoI	GCNNNNNNNGC	2 cut(s)	617, 716
NdeI	CATATG	1 cut(s)	635
NdeII	GATC	6 cut(s)	138, 279, 325, 518, 564, 694
NheI	GCTAGC	1 cut(s)	106
NlaIII	CATG	3 cut(s)	66, 177, 188
NlaIV	GGNNCC	1 cut(s)	741
NruI	TCGCGA	1 cut(s)	626
NspI	RCATGY	2 cut(s)	177, 188
PflFI	GACNNNGTC	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	95, 105, 353
PleI	GAGTC	3 cut(s)	58, 227, 810
PmeI	GTTTAAAC	1 cut(s)	597
PpsI	GAGTC	3 cut(s)	58, 227, 810
Ppu21I	YACGTR	1 cut(s)	646
PpuMI	RGGWCCY	1 cut(s)	739
Psp5II	RGGWCCY	1 cut(s)	739
Psp6I	CCWGG	3 cut(s)	17, 544, 745
PspGI	CCWGG	3 cut(s)	17, 544, 745
PspN4I	GGNNCC	1 cut(s)	741
PspPI	GGNCC	2 cut(s)	368, 739
PspPPI	RGGWCCY	1 cut(s)	739
PsuI	RGATCY	1 cut(s)	518
PsyI	GACNNNGTC	1 cut(s)	305
RruI	TCGCGA	1 cut(s)	626
RsaI	GTAC	3 cut(s)	183, 511, 543
RsaNI	GTAC	3 cut(s)	182, 510, 542
SaqAI	TTAA	2 cut(s)	596, 807
SatI	GCNGC	3 cut(s)	94, 104, 352
Sau3AI	GATC	6 cut(s)	138, 279, 325, 518, 564, 694
Sau96I	GGNCC	2 cut(s)	368, 739
SchI	GAGTC	3 cut(s)	59, 228, 811
ScrFI	CCNGG	3 cut(s)	19, 546, 747
SduI	GDGCHC	1 cut(s)	667
SexAI	ACCWGGT	1 cut(s)	544
SfaNI	GCATC	2 cut(s)	229, 577
SfcI	CTRYAG	2 cut(s)	337, 783
SinI	GGWCC	2 cut(s)	368, 739
SnaBI	TACGTA	1 cut(s)	646
Sse9I	AATT	6 cut(s)	144, 189, 265, 531, 684, 809
SsiI	CCGC	1 cut(s)	103
SspI	AATATT	1 cut(s)	677
SspMI	CTAG	2 cut(s)	107, 423
StyD4I	CCNGG	3 cut(s)	17, 544, 745
TaaI	ACNGT	3 cut(s)	341, 414, 479
TaiI	ACGT	3 cut(s)	156, 603, 648
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	6 cut(s)	144, 189, 265, 531, 684, 809
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	596, 807
Tru9I	TTAA	2 cut(s)	596, 807
TscAI	CASTG	3 cut(s)	346, 417, 721
TseI	GCWGC	2 cut(s)	93, 351
TspGWI	ACGGA	1 cut(s)	776
TspRI	CASTG	3 cut(s)	346, 417, 721
Tth111I	GACNNNGTC	1 cut(s)	305
VneI	GTGCAC	1 cut(s)	663
VpaK11BI	GGWCC	2 cut(s)	368, 739
XapI	RAATTY	2 cut(s)	144, 265
XceI	RCATGY	2 cut(s)	177, 188
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XspI	CTAG	2 cut(s)	107, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.