AT1G62290

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
23009885 .. 23013601
3717 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62290.4

Sequence Viewer

Length: 1542 bp
ATGGGAGTATACTCGAGAGCGGTTGCGTTTTCGGTCTTTGTGTCGTTTCTGCTGTTTTTCACTGCTTATTCTAAGAGAAATGATGGAACATTCAGAGTTGGCCTGAAAAAACTGAAGTTGGATCCTAACAACCGACTCGCAACACGCTTTGGTTCCAAGCAAGAAGAGGCCTTGAGATCTTCTTTGCGTTCGTACAACAACAATCTTGGTGGTGATTCTGGAGATGCTGATATTGTCCCGCTCAAGAATTACTTGGATGCTCAGTACTATGGTGAGATTGCTATTGGTACTCCACCGCAGAAGTTCACTGTCATTTTTGATACCGGAAGCTCTAACCTTTGGGTGCCATCAGGAAAATGTTTTTTCTCGCTGTCTTGTTACTTTCATGCTAAGTACAAGTCCTCGCGATCAAGCACATATAAGAAGAGTGGAAAACGTGCCGCAATCCATTACGGCTCAGGATCAATCTCTGGTTTCTTTAGTTATGATGCTGTCACGGTTGGTGATTTGGTTGTCAAAGATCAGGAGTTTATTGAGACAACCAGTGAGCCTGGTTTAACATTCCTGGTGGCTAAGTTTGATGGTCTTCTTGGTCTTGGGTTCCAAGAGATCGCTGTTGGAAACGCTACTCCTGTTTGGTACAATATGCTCAAGCAAGGCCTTATAAAGAGGCCGGTCTTTTCATTTTGGCTTAACCGTGATCCAAAGAGTGAAGAAGGCGGTGAAATCGTATTCGGAGGTGTTGATCCAAAGCATTTTAGAGGAGAACATACATTTGTTCCTGTGACACAAAGGGGTTACTGGCAGTTCGACATGGGTGAGGTTCTCATTGCCGGTGAATCTACTGGATATTGTGGAAGTGGTTGTTCTGCGATAGCAGATTCTGGAACATCGTTACTTGCGGGTCCAACGGCTGTGGTTGCCATGATAAATAAGGCTATTGGAGCATCTGGAGTTGTTAGCCAGCAGTGCAAGACTGTTGTTGACCAGTATGGACAAACCATTTTGGATTTACTTTTGGCTGAGACTCAACCAAAGAAGATTTGCTCACAAATTGGTCTTTGCGCTTACGATGGCACCCATGGGGTCAGTATGGGGATTGAATCGGTGGTGGACAAGGAAAACACAAGATCATCTAGTGGTCTTCGAGACGCGGGTTGTCCTGCATGTGAAATGGCGGTTGTGTGGATACAGAGCCAATTGAGGCAGAACATGACTCAAGAGAGGATAGTGAACTACATTAATGAGATATGCGAGCGCATGCCTAGTCCAAATGGAGAGTCTGCTGTTGACTGCTCACAACTTTCTAAAATGCCTACTGTTTCATTCACCATTGGAGGCAAAGTCTTTGATCTTGCTCCCGAAGAGTACGTACTGAAGATTGGGGAAGGACCAGTGGCACAATGTATTAGCGGCTTTACCGCACTTGATATCCCTCCACCTCGTGGACCTCTCTGGATACTTGGAGATGTGTTTATGGGAAAATACCACACTGTCTTTGACTTCGGAAACGAGCAGGTTGGCTTCGCAGAAGCCGTGTGA

Protein Analysis

513

Amino Acids

55.75

Weight (kDa)

5.97

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 88 - 457 2.5e-95 Eukaryotic aspartyl protease
TAXi_N PF14543 89 - 247 2.5e-10 Xylanase inhibitor N-terminal
SapB_2 PF03489 322 - 355 1.5e-13 Saposin-like type B, region 2
SapB_1 PF05184 386 - 422 8.8e-13 Saposin-like type B, region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 665
Acc36I ACCTGC 1 cut(s) 1507
AccB1I GGYRCC 2 cut(s) 343, 1076
AccB7I CCANNNNNTGG 1 cut(s) 1445
AccBSI CCGCTC 2 cut(s) 20, 241
AccI GTMKAC 1 cut(s) 9
AccII CGCG 2 cut(s) 406, 1154
AclWI GGATC 5 cut(s) 116, 129, 469, 695, 740
AcuI CTGAAG 2 cut(s) 134, 1397
AdeI CACNNNGTG 1 cut(s) 1445
AfaI GTAC 7 cut(s) 194, 266, 289, 395, 641, 1370, 1374
AfiI CCNNNNNNNGG 1 cut(s) 1445
AgsI TTSAA 1 cut(s) 1103
AjnI CCWGG 2 cut(s) 550, 564
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
Alw26I GTCTC 3 cut(s) 530, 1019, 1143
AlwI GGATC 5 cut(s) 116, 129, 469, 695, 740
AlwNI CAGNNNCTG 1 cut(s) 884
Ama87I CYCGRG 1 cut(s) 13
AoxI GGCC 4 cut(s) 100, 168, 658, 671
ArsI GACNNNNNNTTYG 2 cut(s) 1265, 1297
AseI ATTAAT 1 cut(s) 1242
AspLEI GCGC 2 cut(s) 1067, 1260
AspS9I GGNCC 3 cut(s) 905, 1391, 1448
AsuHPI GGTGA 7 cut(s) 224, 284, 515, 734, 830, 848, 1321
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 3 cut(s) 905, 1391, 1448
BamHI GGATCC 1 cut(s) 121
BanI GGYRCC 2 cut(s) 343, 1076
BarI GAAGNNNNNNTAC 2 cut(s) 1356, 1388
BauI CACGAG 1 cut(s) 1443
BbsI GAAGAC 2 cut(s) 578, 1136
BccI CCATC 4 cut(s) 77, 355, 575, 1067
BceAI ACGGC 3 cut(s) 469, 927, 1520
BciT130I CCWGG 2 cut(s) 552, 566
BciVI GTATCC 2 cut(s) 1182, 1452
BcoDI GTCTC 3 cut(s) 530, 1019, 1143
BfaI CTAG 2 cut(s) 1137, 1266
BfuAI ACCTGC 1 cut(s) 1507
BfuI GTATCC 2 cut(s) 1182, 1452
BglII AGATCT 1 cut(s) 176
BisI GCNGC 2 cut(s) 441, 1414
BlsI GCNGC 2 cut(s) 442, 1415
BmcAI AGTACT 1 cut(s) 266
Bme1390I CCNGG 2 cut(s) 552, 566
Bme18I GGWCC 3 cut(s) 905, 1391, 1448
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 3 cut(s) 905, 1391, 1448
BmiI GGNNCC 6 cut(s) 123, 154, 345, 602, 906, 1078
BmrFI CCNGG 2 cut(s) 552, 566
BmsI GCATC 4 cut(s) 214, 247, 478, 956
BpiI GAAGAC 2 cut(s) 578, 1136
BpmI CTGGAG 2 cut(s) 240, 972
Bpu10I CCTNAGC 1 cut(s) 457
BpuEI CTTGAG 4 cut(s) 193, 227, 635, 1203
BsaAI YACGTR 1 cut(s) 1372
BsaJI CCNNGG 1 cut(s) 1081
BsaWI WCCGGW 1 cut(s) 323
BsaXI ACNNNNNCTCC 2 cut(s) 1329, 1359
Bsc4I CCNNNNNNNGG 1 cut(s) 1445
Bse118I RCCGGY 2 cut(s) 673, 833
Bse1I ACTGG 5 cut(s) 543, 806, 850, 988, 1394
Bse3DI GCAATG 1 cut(s) 828
BseBI CCWGG 2 cut(s) 552, 566
BseDI CCNNGG 1 cut(s) 1081
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 1445
BseMI GCAATG 1 cut(s) 828
BseMII CTCAG 3 cut(s) 275, 471, 1014
BseNI ACTGG 5 cut(s) 543, 806, 850, 988, 1394
BseRI GAGGAG 1 cut(s) 777
Bsh1236I CGCG 2 cut(s) 406, 1154
BshFI GGCC 4 cut(s) 102, 170, 660, 673
BshNI GGYRCC 2 cut(s) 343, 1076
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 3 cut(s) 324, 674, 834
BslFI GGGAC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 1445
BsmAI GTCTC 3 cut(s) 530, 1019, 1143
BsmBI CGTCTC 1 cut(s) 1143
BsmFI GGGAC 1 cut(s) 221
BsnI GGCC 4 cut(s) 102, 170, 660, 673
BsoBI CYCGRG 1 cut(s) 13
Bsp19I CCATGG 1 cut(s) 1081
Bsp68I TCGCGA 1 cut(s) 406
BspANI GGCC 4 cut(s) 102, 170, 660, 673
BspCNI CTCAG 3 cut(s) 274, 470, 1015
BspFNI CGCG 2 cut(s) 406, 1154
BspLI GGNNCC 6 cut(s) 123, 154, 345, 602, 906, 1078
BspMI ACCTGC 1 cut(s) 1507
BspPI GGATC 5 cut(s) 116, 129, 469, 695, 740
BspT107I GGYRCC 2 cut(s) 343, 1076
BsrBI CCGCTC 2 cut(s) 20, 241
BsrDI GCAATG 1 cut(s) 828
BsrFI RCCGGY 2 cut(s) 673, 833
BsrI ACTGG 5 cut(s) 543, 806, 850, 988, 1394
BssAI RCCGGY 2 cut(s) 673, 833
BssECI CCNNGG 1 cut(s) 1081
BssNAI GTATAC 1 cut(s) 10
BssSI CACGAG 1 cut(s) 1443
BssT1I CCWWGG 1 cut(s) 1081
Bst1107I GTATAC 1 cut(s) 10
Bst2BI CACGAG 1 cut(s) 1443
Bst2UI CCWGG 2 cut(s) 552, 566
Bst4CI ACNGT 6 cut(s) 310, 499, 698, 979, 1321, 1495
Bst6I CTCTTC 3 cut(s) 159, 419, 1359
BstBAI YACGTR 1 cut(s) 1372
BstC8I GCNNGC 3 cut(s) 965, 1256, 1262
BstDEI CTNAG 6 cut(s) 72, 261, 390, 457, 573, 1023
BstDSI CCRYGG 1 cut(s) 1081
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 2 cut(s) 406, 1154
BstHHI GCGC 2 cut(s) 1067, 1260
BstMAI GTCTC 3 cut(s) 530, 1019, 1143
BstMWI GCNNNNNNNGC 3 cut(s) 920, 944, 969
BstNI CCWGG 2 cut(s) 552, 566
BstNSI RCATGY 2 cut(s) 1170, 1264
BstSCI CCNGG 2 cut(s) 550, 564
BstSNI TACGTA 1 cut(s) 1372
BstUI CGCG 2 cut(s) 406, 1154
BstV2I GAAGAC 2 cut(s) 578, 1136
BstX2I RGATCY 2 cut(s) 121, 176
BstYI RGATCY 2 cut(s) 121, 176
BstZ17I GTATAC 1 cut(s) 10
BsuI GTATCC 2 cut(s) 1182, 1452
BsuRI GGCC 4 cut(s) 102, 170, 660, 673
BtgI CCRYGG 1 cut(s) 1081
BtsCI GGATG 1 cut(s) 262
BtsI GCAGTG 2 cut(s) 60, 974
BtsIMutI CAGTG 6 cut(s) 60, 306, 550, 974, 1401, 1491
BtuMI TCGCGA 1 cut(s) 406
BveI ACCTGC 1 cut(s) 1507
Cac8I GCNNGC 3 cut(s) 965, 1256, 1262
CaiI CAGNNNCTG 1 cut(s) 884
CfoI GCGC 2 cut(s) 1067, 1260
Cfr10I RCCGGY 2 cut(s) 673, 833
Cfr13I GGNCC 3 cut(s) 905, 1391, 1448
CseI GACGC 1 cut(s) 1160
Csp6I GTAC 7 cut(s) 193, 265, 288, 394, 640, 1369, 1373
CspCI CAANNNNNGTGG 4 cut(s) 190, 225, 897, 932
CviAII CATG 7 cut(s) 386, 814, 925, 1082, 1167, 1213, 1261
CviQI GTAC 7 cut(s) 193, 265, 288, 394, 640, 1369, 1373
DdeI CTNAG 6 cut(s) 72, 261, 390, 457, 573, 1023
DraIII CACNNNGTG 1 cut(s) 1445
Eam1104I CTCTTC 3 cut(s) 159, 419, 1359
EarI CTCTTC 3 cut(s) 159, 419, 1359
Eco105I TACGTA 1 cut(s) 1372
Eco130I CCWWGG 1 cut(s) 1081
Eco147I AGGCCT 2 cut(s) 170, 660
Eco32I GATATC 1 cut(s) 1432
Eco47I GGWCC 3 cut(s) 905, 1391, 1448
Eco57I CTGAAG 2 cut(s) 134, 1397
Eco88I CYCGRG 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 550, 564
EcoRV GATATC 1 cut(s) 1432
EcoT14I CCWWGG 1 cut(s) 1081
ErhI CCWWGG 1 cut(s) 1081
Esp3I CGTCTC 1 cut(s) 1143
FaeI CATG 7 cut(s) 389, 817, 928, 1085, 1170, 1216, 1264
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 1 cut(s) 221
FatI CATG 7 cut(s) 385, 813, 924, 1081, 1166, 1212, 1260
FauI CCCGC 3 cut(s) 246, 895, 1147
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 2 cut(s) 441, 1414
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 441, 1414
FspBI CTAG 2 cut(s) 1137, 1266
GlaI GCGC 2 cut(s) 1066, 1259
GluI GCNGC 2 cut(s) 441, 1414
GsuI CTGGAG 2 cut(s) 240, 972
HaeIII GGCC 4 cut(s) 102, 170, 660, 673
HapII CCGG 3 cut(s) 324, 674, 834
HgaI GACGC 1 cut(s) 1160
HhaI GCGC 2 cut(s) 1067, 1260
Hin1II CATG 7 cut(s) 389, 817, 928, 1085, 1170, 1216, 1264
Hin6I GCGC 2 cut(s) 1065, 1258
HinP1I GCGC 2 cut(s) 1065, 1258
HincII GTYRAC 2 cut(s) 985, 1291
HindII GTYRAC 2 cut(s) 985, 1291
HinfI GANTC 8 cut(s) 135, 215, 839, 881, 1027, 1103, 1216, 1280
HpaII CCGG 3 cut(s) 324, 674, 834
HphI GGTGA 7 cut(s) 224, 284, 515, 734, 830, 848, 1321
Hpy166II GTNNAC 7 cut(s) 10, 306, 985, 1114, 1234, 1291, 1448
Hpy188I TCNGA 3 cut(s) 95, 737, 1508
Hpy8I GTNNAC 7 cut(s) 10, 306, 985, 1114, 1234, 1291, 1448
HpyAV CCTTC 2 cut(s) 710, 1382
HpyCH4III ACNGT 6 cut(s) 310, 499, 698, 979, 1321, 1495
HpyCH4IV ACGT 2 cut(s) 436, 1371
HpyCH4V TGCA 2 cut(s) 972, 1166
HpyF10VI GCNNNNNNNGC 3 cut(s) 920, 944, 969
HpyF3I CTNAG 6 cut(s) 72, 261, 390, 457, 573, 1023
HpySE526I ACGT 2 cut(s) 436, 1371
Hsp92II CATG 7 cut(s) 389, 817, 928, 1085, 1170, 1216, 1264
HspAI GCGC 2 cut(s) 1065, 1258
LmnI GCTCC 2 cut(s) 944, 1363
LweI GCATC 4 cut(s) 214, 247, 478, 956
MaeI CTAG 2 cut(s) 1137, 1266
MaeII ACGT 2 cut(s) 436, 1371
MaeIII GTNAC 5 cut(s) 377, 493, 784, 797, 894
MbiI CCGCTC 2 cut(s) 20, 241
MboII GAAGA 9 cut(s) 171, 176, 436, 578, 725, 1051, 1136, 1376, 1390
MfeI CAATTG 1 cut(s) 1199
MflI RGATCY 2 cut(s) 121, 176
MluCI AATT 3 cut(s) 247, 1053, 1199
MlyI GAGTC 4 cut(s) 129, 1021, 1210, 1289
MmeI TCCRAC 3 cut(s) 99, 598, 932
MseI TTAA 3 cut(s) 557, 693, 1242
MspI CCGG 3 cut(s) 324, 674, 834
MspR9I CCNGG 2 cut(s) 552, 566
MunI CAATTG 1 cut(s) 1199
MvaI CCWGG 2 cut(s) 552, 566
MvnI CGCG 2 cut(s) 406, 1154
MwoI GCNNNNNNNGC 3 cut(s) 920, 944, 969
NcoI CCATGG 1 cut(s) 1081
NlaIII CATG 7 cut(s) 389, 817, 928, 1085, 1170, 1216, 1264
NlaIV GGNNCC 6 cut(s) 123, 154, 345, 602, 906, 1078
NmuCI GTSAC 2 cut(s) 493, 784
NruI TCGCGA 1 cut(s) 406
NspI RCATGY 2 cut(s) 1170, 1264
PaeI GCATGC 1 cut(s) 1264
PaeR7I CTCGAG 1 cut(s) 13
PceI AGGCCT 2 cut(s) 170, 660
PcsI WCGNNNNNNNCGW 1 cut(s) 1533
PfeI GAWTC 4 cut(s) 215, 839, 881, 1103
PflMI CCANNNNNTGG 1 cut(s) 1445
PkrI GCNGC 2 cut(s) 442, 1415
PleI GAGTC 4 cut(s) 129, 1021, 1210, 1288
PpsI GAGTC 4 cut(s) 129, 1021, 1210, 1288
Ppu21I YACGTR 1 cut(s) 1372
PshBI ATTAAT 1 cut(s) 1242
PsiI TTATAA 1 cut(s) 665
Psp6I CCWGG 2 cut(s) 550, 564
PspGI CCWGG 2 cut(s) 550, 564
PspN4I GGNNCC 6 cut(s) 123, 154, 345, 602, 906, 1078
PspPI GGNCC 3 cut(s) 905, 1391, 1448
PstNI CAGNNNCTG 1 cut(s) 884
PsuI RGATCY 2 cut(s) 121, 176
RruI TCGCGA 1 cut(s) 406
RsaI GTAC 7 cut(s) 194, 266, 289, 395, 641, 1370, 1374
RsaNI GTAC 7 cut(s) 193, 265, 288, 394, 640, 1369, 1373
SaqAI TTAA 3 cut(s) 557, 693, 1242
SatI GCNGC 2 cut(s) 441, 1414
Sau96I GGNCC 3 cut(s) 905, 1391, 1448
ScaI AGTACT 1 cut(s) 266
SchI GAGTC 4 cut(s) 129, 1021, 1210, 1289
ScrFI CCNGG 2 cut(s) 552, 566
SetI ASST 9 cut(s) 332, 339, 439, 742, 825, 1374, 1444, 1453, 1521
SfaNI GCATC 4 cut(s) 214, 247, 478, 956
Sfr274I CTCGAG 1 cut(s) 13
SinI GGWCC 3 cut(s) 905, 1391, 1448
SlaI CTCGAG 1 cut(s) 13
SmlI CTYRAG 5 cut(s) 13, 172, 242, 650, 1218
SmoI CTYRAG 5 cut(s) 13, 172, 242, 650, 1218
SnaBI TACGTA 1 cut(s) 1372
SphI GCATGC 1 cut(s) 1264
Sse9I AATT 3 cut(s) 247, 1053, 1199
SseBI AGGCCT 2 cut(s) 170, 660
SspMI CTAG 2 cut(s) 1137, 1266
StuI AGGCCT 2 cut(s) 170, 660
StyD4I CCNGG 2 cut(s) 550, 564
StyI CCWWGG 1 cut(s) 1081
TaaI ACNGT 6 cut(s) 310, 499, 698, 979, 1321, 1495
TaiI ACGT 2 cut(s) 439, 1374
TaqI TCGA 3 cut(s) 14, 810, 1147
TaqII GACCGA 1 cut(s) 22
TasI AATT 3 cut(s) 247, 1053, 1199
TatI WGTACW 2 cut(s) 264, 393
TauI GCSGC 2 cut(s) 443, 1416
TfiI GAWTC 4 cut(s) 215, 839, 881, 1103
Tru1I TTAA 3 cut(s) 557, 693, 1242
Tru9I TTAA 3 cut(s) 557, 693, 1242
TscAI CASTG 6 cut(s) 67, 313, 550, 974, 1401, 1498
TseFI GTSAC 2 cut(s) 493, 784
Tsp45I GTSAC 2 cut(s) 493, 784
TspDTI ATGAA 3 cut(s) 374, 672, 1314
TspRI CASTG 6 cut(s) 67, 313, 550, 974, 1401, 1498
Van91I CCANNNNNTGG 1 cut(s) 1445
VpaK11BI GGWCC 3 cut(s) 905, 1391, 1448
VspI ATTAAT 1 cut(s) 1242
XceI RCATGY 2 cut(s) 1170, 1264
XhoI CTCGAG 1 cut(s) 13
XmiI GTMKAC 1 cut(s) 9
XspI CTAG 2 cut(s) 1137, 1266
ZrmI AGTACT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.