Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001862

Physical Location & Seq

Genomic Coordinates Forward (+)

51305119 .. 51305373

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1413400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAAAAAGGAGATTCAATGTGCGGAGATCCAGTATGGAACTGGTGCAATTTCAGGTTTCTTCCACCAGGACCATGTCCAAGTCGGTGATCTTGTTGTTAAGGATCAGGACTTTATTGAGGCAACCAAAGAGCCTGGAGTCACGTTTGTGGCAGCTAAGTTTGATGGTATTCTTGGACTTGGATTTCAACATATCTCAGTTGGAGATGCTGTTCCTGTCTGGTATAATTTGGTCAATCAAGGTCTTGTTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

85

Amino Acids

9.16

Weight (kDa)

5.07

Isoelectric Point (pI)

28.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	4 - 84	4.2e-25	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11910 AT1G11910 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290
fragaria_vesca	FvH4_3g23140 FvH4_3g23140 FvH4_6g42880 FvH4_6g42880
malus_domestica	MD00G1159300.v1.1 MD09G1111100.v1.1 MD11G1213600.v1.1 MD15G1413400.v1.1 MD17G1098900.v1.1 MD17G1282600.v1.1 MD17G1282700.v1.1
prunus_persica	Prupe.3G214900_v2.0.a1 Prupe.3G214900_v2.0.a1 Prupe.4G217700_v2.0.a1
pyrus_communis	pycom03g14920 pycom09g03360 pycom11g18820 pycom17g09430
rosa_chinensis	RchiOBHm_Chr2g0158811 RchiOBHm_Chr5g0040781
rosa_laevigata	RLG00000021115 RLG00000034001
rosa_multiflora	Rmu_sc0001579.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039910 Rroxscaffold_2G00090980
rosa_rugosa	Rorug02G0472700 Rorug05G0187200 Rorug05G0187300
rosa_samantha	Rh2AG538500 Rh2BG551200 Rh2CG521800 Rh2DG561000 Rh5AG273000 Rh5BG278100 Rh5CG310100 Rh5DG286000
rosa_wichuraiana	Rw2G044570 Rw5G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	2 cut(s)	22, 111
AgsI	TTSAA	2 cut(s)	17, 188
AjnI	CCWGG	2 cut(s)	66, 133
AleI	CACNNNNGTG	1 cut(s)	146
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AlwI	GGATC	2 cut(s)	22, 111
ApeKI	GCWGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	98
AvaII	GGWCC	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	2 cut(s)	68, 135
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	2 cut(s)	68, 135
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmrFI	CCNGG	2 cut(s)	68, 135
BmsI	GCATC	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	156
BsaXI	ACNNNNNCTCC	4 cut(s)	17, 47, 195, 225
Bse1I	ACTGG	2 cut(s)	31, 46
BseBI	CCWGG	2 cut(s)	68, 135
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	31, 46
BseXI	GCAGC	1 cut(s)	164
Bsp143I	GATC	3 cut(s)	27, 88, 103
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	209
BspPI	GGATC	2 cut(s)	22, 111
BsrI	ACTGG	2 cut(s)	31, 46
BssMI	GATC	3 cut(s)	27, 88, 103
Bst2UI	CCWGG	2 cut(s)	68, 135
BstDEI	CTNAG	2 cut(s)	156, 196
BstKTI	GATC	3 cut(s)	30, 91, 106
BstMBI	GATC	3 cut(s)	27, 88, 103
BstNI	CCWGG	2 cut(s)	68, 135
BstSCI	CCNGG	2 cut(s)	66, 133
BstV1I	GCAGC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
Cfr13I	GGNCC	1 cut(s)	70
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	2 cut(s)	133, 155
CviKI_1	RGCY	2 cut(s)	133, 155
DdeI	CTNAG	2 cut(s)	156, 196
DpnI	GATC	3 cut(s)	29, 90, 105
DpnII	GATC	3 cut(s)	27, 88, 103
Eco47I	GGWCC	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	66, 133
FaeI	CATG	1 cut(s)	77
FaiI	YATR	4 cut(s)	36, 75, 192, 225
FatI	CATG	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	153
GluI	GCNGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	156
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	2 cut(s)	13, 138
HphI	GGTGA	1 cut(s)	98
Hpy188III	TCNNGA	1 cut(s)	107
HpyCH4IV	ACGT	1 cut(s)	143
HpyCH4V	TGCA	1 cut(s)	47
HpyF3I	CTNAG	2 cut(s)	156, 196
HpySE526I	ACGT	1 cut(s)	143
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	3 cut(s)	27, 88, 103
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	1 cut(s)	196
MaeII	ACGT	1 cut(s)	143
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	3 cut(s)	29, 90, 105
MboI	GATC	3 cut(s)	27, 88, 103
MboII	GAAGA	1 cut(s)	52
MflI	RGATCY	1 cut(s)	27
MluCI	AATT	2 cut(s)	48, 226
MlyI	GAGTC	1 cut(s)	147
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	1 cut(s)	112
MseI	TTAA	2 cut(s)	99, 249
MslI	CAYNNNNRTG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	68, 135
MvaI	CCWGG	2 cut(s)	68, 135
NdeII	GATC	3 cut(s)	27, 88, 103
NlaIII	CATG	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	139
OliI	CACNNNNGTG	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	154
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp6I	CCWGG	2 cut(s)	66, 133
PspGI	CCWGG	2 cut(s)	66, 133
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	27
PsyI	GACNNNGTC	1 cut(s)	74
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	2 cut(s)	99, 249
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	3 cut(s)	27, 88, 103
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	147
ScrFI	CCNGG	2 cut(s)	68, 135
SetI	ASST	4 cut(s)	58, 146, 157, 244
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	2 cut(s)	48, 226
SsiI	CCGC	1 cut(s)	23
StyD4I	CCNGG	2 cut(s)	66, 133
TaiI	ACGT	1 cut(s)	146
TasI	AATT	2 cut(s)	48, 226
TfiI	GAWTC	1 cut(s)	13
Tru1I	TTAA	2 cut(s)	99, 249
Tru9I	TTAA	2 cut(s)	99, 249
TseFI	GTSAC	1 cut(s)	139
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	70
XcmI	CCANNNNNNNNNTGG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.