Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001862

Physical Location & Seq

Genomic Coordinates Forward (+)

18190176 .. 18192941

Gene Structure 2766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0187200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGCTACTGCTGTTTCTTCTTGCTCTGCTATCATCCCTCGGGAGAAGTATGATGTATTTCTTAGTTTCAGAGGCGAGGACACCCGGAATACTTTTACTAGCCATCTTTTTGAGGCTCTATGTCAGAAAAAAATCCAAACTTACATAGATTACAAACTGGAGAGAGGAGATGAAATCGCACCTGCCCTTCTCGAAGCAATCAATCCATCAGATGTGCGCAAACAATCGGGGAGTTATGCAGATGCATTTGTTCAACATGAGAAACGTTTTGAGGACATGAGGGACAAGGTGCGCAGGTGGAGAAATGCGTTGACAACAGCAGCCAATATATCTGGGTTTAATTCCCAAACAGATAGGCCCGAGTCTGATTTAGTTAAGGTTGTGGTCAATGACATTTTGGAGAAATTGAATCGCAAATTGCAAATTGCACGGGGTTTAAAGGGCCTGGTTGGAATGGAAAAACACATTCAACAAGTTGAATTCTTATTATGTCTCAAATCACTGGATGTCCAGATTGTAGGTATTTGGGGTATGGGTGGTATCGGTAAGACCACCATTGCTGAGGTTGTATTTGATCGTCTCTCTTCTCAATTCGAAGCTTGCTGCTTTATTGCAAATTTTAGGGAATCAGAGGTGAAACATGGACTAAATGATTTGTGGAATCAGATTCTTCGTAAACTACTGAAGGAAGAAAGTCTATGTATGGCCACCCCATCTATTATGTCAACTTTTGCACGAGAGAGGATTCGCCGTACAAAGGCCCTCGTTGTTCTTGATGATGAATTAGACGTTGATGAAGCTCTTGAGCTCTTTCATTTGACAGCTAATATCTCTTTCCCAGGTGATTACACAACTTTTGCAAAACAGGTGGTAGATTATGCTGGGGGCAACCCATTGGCTCTTACAATGTTGGGCTCCGTATTCTCTCATTGCAGGAGCAAATTAAGAAGACTGGGAAGATTAGAAGAAAATGAGAAGGATATATTCCTCGATATCGCATGTTACTATACAGGAGAGGATATAGATTGTGCAAAACGCATGTTAGATGCCTCTGGTTTCTGTGCGAATGCAGGGATAAGACTTCTCATTGATATGTCTCTGATATCCGTGGATGAAGATTCAACACTTAAGATGCATGATTTGATACAAGAAATGGGTCATAAAATTGTTCGTGATCAATGTGTTAAGAATCCTGGAAAACGCAGTAGATTATGGATTGCTGAGGATGGAACTGTAGCCATTGAATGCTTAGTCGCGAGCATGGACTCCATTTCAGATCTTGACATAGAGAACCTCCAGCCTTCAAAAAGATGCATAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

440

Amino Acids

49.65

Weight (kDa)

5.66

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	16 - 70	4.4e-15	TIR domain
TIR	PF01582	69 - 151	5.2e-13	TIR domain
NB-ARC	PF00931	153 - 262	3.3e-11	NB-ARC domain
WHD_ROQ1	PF23282	322 - 393	7.7e-22	Disease resistance protein Roq1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11910 AT1G11910 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290
fragaria_vesca	FvH4_3g23140 FvH4_3g23140 FvH4_6g42880 FvH4_6g42880
malus_domestica	MD00G1159300.v1.1 MD09G1111100.v1.1 MD11G1213600.v1.1 MD15G1413400.v1.1 MD17G1098900.v1.1 MD17G1282600.v1.1 MD17G1282700.v1.1
prunus_persica	Prupe.3G214900_v2.0.a1 Prupe.3G214900_v2.0.a1 Prupe.4G217700_v2.0.a1
pyrus_communis	pycom03g14920 pycom09g03360 pycom11g18820 pycom17g09430
rosa_chinensis	RchiOBHm_Chr2g0158811 RchiOBHm_Chr5g0040781
rosa_laevigata	RLG00000021115 RLG00000034001
rosa_multiflora	Rmu_sc0001579.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039910 Rroxscaffold_2G00090980
rosa_rugosa	Rorug02G0472700 Rorug05G0187200 Rorug05G0187300
rosa_samantha	Rh2AG538500 Rh2BG551200 Rh2CG521800 Rh2DG561000 Rh5AG273000 Rh5BG278100 Rh5CG310100 Rh5DG286000
rosa_wichuraiana	Rw2G044570 Rw5G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	190, 285
Acc16I	TGCGCA	2 cut(s)	218, 293
Acc36I	ACCTGC	2 cut(s)	190, 285
AccII	CGCG	1 cut(s)	1256
AclI	AACGTT	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	705
AcsI	RAATTY	2 cut(s)	479, 616
AcuI	CTGAAG	1 cut(s)	704
AfaI	GTAC	1 cut(s)	754
AfiI	CCNNNNNNNGG	1 cut(s)	757
AflII	CTTAAG	1 cut(s)	1127
AgsI	TTSAA	7 cut(s)	254, 409, 470, 479, 1122, 1244, 1305
AjnI	CCWGG	3 cut(s)	444, 838, 1192
AluBI	AGCT	4 cut(s)	599, 800, 808, 824
AluI	AGCT	4 cut(s)	599, 800, 808, 824
Alw21I	GWGCWC	1 cut(s)	810
Alw26I	GTCTC	3 cut(s)	497, 584, 1101
Ama87I	CYCGRG	2 cut(s)	39, 359
AoxI	GGCC	4 cut(s)	356, 442, 705, 759
ApeKI	GCWGC	2 cut(s)	320, 603
ApoI	RAATTY	2 cut(s)	479, 616
AspLEI	GCGC	2 cut(s)	219, 294
AspS9I	GGNCC	3 cut(s)	357, 442, 760
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	2 cut(s)	646, 854
AsuII	TTCGAA	1 cut(s)	594
AvaI	CYCGRG	2 cut(s)	39, 359
BalI	TGGCCA	1 cut(s)	707
BanII	GRGCYC	2 cut(s)	810, 917
BauI	CACGAG	1 cut(s)	735
BbsI	GAAGAC	1 cut(s)	955
Bbv12I	GWGCWC	1 cut(s)	810
BbvCI	CCTCAGC	2 cut(s)	561, 1221
BbvI	GCAGC	2 cut(s)	332, 590
BccI	CCATC	4 cut(s)	111, 214, 721, 1220
BceAI	ACGGC	1 cut(s)	735
BciT130I	CCWGG	3 cut(s)	446, 840, 1194
BclI	TGATCA	1 cut(s)	1174
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	3 cut(s)	497, 584, 1101
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	1233
BfrI	CTTAAG	1 cut(s)	1127
BfuAI	ACCTGC	2 cut(s)	190, 285
BglII	AGATCT	1 cut(s)	1276
BisI	GCNGC	2 cut(s)	321, 604
BlsI	GCNGC	2 cut(s)	322, 605
Bme1390I	CCNGG	4 cut(s)	85, 446, 840, 1194
BmeT110I	CYCGRG	2 cut(s)	39, 359
BmgT120I	GGNCC	3 cut(s)	357, 442, 760
BmiI	GGNNCC	1 cut(s)	916
BmrFI	CCNGG	4 cut(s)	85, 446, 840, 1194
BmrI	ACTGGG	1 cut(s)	962
BmsI	GCATC	4 cut(s)	232, 1036, 1122, 1301
BmuI	ACTGGG	1 cut(s)	962
BpiI	GAAGAC	1 cut(s)	955
BpmI	CTGGAG	2 cut(s)	179, 1280
Bpu10I	CCTNAGC	2 cut(s)	561, 1221
Bpu14I	TTCGAA	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	824
BpuMI	CCSGG	1 cut(s)	85
BsaJI	CCNNGG	3 cut(s)	38, 838, 1107
Bsc4I	CCNNNNNNNGG	1 cut(s)	757
Bse1I	ACTGG	3 cut(s)	162, 507, 957
Bse3DI	GCAATG	2 cut(s)	555, 928
BseBI	CCWGG	3 cut(s)	446, 840, 1194
BseDI	CCNNGG	3 cut(s)	38, 838, 1107
BseGI	GGATG	4 cut(s)	33, 511, 1117, 1231
BseLI	CCNNNNNNNGG	1 cut(s)	757
BseMI	GCAATG	2 cut(s)	555, 928
BseMII	CTCAG	2 cut(s)	552, 1212
BseNI	ACTGG	3 cut(s)	162, 507, 957
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	332, 590
BseYI	CCCAGC	1 cut(s)	881
Bsh1236I	CGCG	1 cut(s)	1256
BshFI	GGCC	4 cut(s)	358, 444, 707, 761
BsiHKAI	GWGCWC	1 cut(s)	810
BsiHKCI	CYCGRG	2 cut(s)	39, 359
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	757
BsmAI	GTCTC	3 cut(s)	497, 584, 1101
BsmBI	CGTCTC	1 cut(s)	584
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	2 cut(s)	1072, 1250
BsnI	GGCC	4 cut(s)	358, 444, 707, 761
BsoBI	CYCGRG	2 cut(s)	39, 359
Bsp119I	TTCGAA	1 cut(s)	594
Bsp1286I	GDGCHC	2 cut(s)	810, 917
Bsp143I	GATC	3 cut(s)	574, 1174, 1276
Bsp68I	TCGCGA	1 cut(s)	1256
BspANI	GGCC	4 cut(s)	358, 444, 707, 761
BspCNI	CTCAG	2 cut(s)	553, 1213
BspFNI	CGCG	1 cut(s)	1256
BspLI	GGNNCC	1 cut(s)	916
BspMI	ACCTGC	2 cut(s)	190, 285
BspT104I	TTCGAA	1 cut(s)	594
BspTI	CTTAAG	1 cut(s)	1127
BsrDI	GCAATG	2 cut(s)	555, 928
BsrI	ACTGG	3 cut(s)	162, 507, 957
BssECI	CCNNGG	3 cut(s)	38, 838, 1107
BssMI	GATC	3 cut(s)	574, 1174, 1276
BssSI	CACGAG	1 cut(s)	735
Bst2BI	CACGAG	1 cut(s)	735
Bst2UI	CCWGG	3 cut(s)	446, 840, 1194
Bst4CI	ACNGT	1 cut(s)	1234
Bst6I	CTCTTC	1 cut(s)	589
BstAFI	CTTAAG	1 cut(s)	1127
BstBI	TTCGAA	1 cut(s)	594
BstC8I	GCNNGC	2 cut(s)	601, 1258
BstDEI	CTNAG	4 cut(s)	62, 561, 1221, 1249
BstDSI	CCRYGG	1 cut(s)	1107
BstF5I	GGATG	4 cut(s)	33, 511, 1117, 1231
BstFNI	CGCG	1 cut(s)	1256
BstHHI	GCGC	2 cut(s)	219, 294
BstKTI	GATC	3 cut(s)	577, 1177, 1279
BstMAI	GTCTC	3 cut(s)	497, 584, 1101
BstMBI	GATC	3 cut(s)	574, 1174, 1276
BstNI	CCWGG	3 cut(s)	446, 840, 1194
BstNSI	RCATGY	2 cut(s)	1002, 1042
BstSCI	CCNGG	4 cut(s)	83, 444, 838, 1192
BstSFI	CTRYAG	1 cut(s)	1233
BstUI	CGCG	1 cut(s)	1256
BstV1I	GCAGC	2 cut(s)	332, 590
BstV2I	GAAGAC	1 cut(s)	955
BstX2I	RGATCY	1 cut(s)	1276
BstYI	RGATCY	1 cut(s)	1276
BsuRI	GGCC	4 cut(s)	358, 444, 707, 761
BtgI	CCRYGG	1 cut(s)	1107
BtsCI	GGATG	4 cut(s)	33, 511, 1117, 1231
BtsIMutI	CAGTG	1 cut(s)	500
BtuMI	TCGCGA	1 cut(s)	1256
BveI	ACCTGC	2 cut(s)	190, 285
Cac8I	GCNNGC	2 cut(s)	601, 1258
CfoI	GCGC	2 cut(s)	219, 294
Cfr13I	GGNCC	3 cut(s)	357, 442, 760
Csp6I	GTAC	1 cut(s)	753
CspCI	CAANNNNNGTGG	2 cut(s)	849, 884
CviAII	CATG	7 cut(s)	257, 277, 641, 999, 1039, 1136, 1261
CviQI	GTAC	1 cut(s)	753
DdeI	CTNAG	4 cut(s)	62, 561, 1221, 1249
DpnI	GATC	3 cut(s)	576, 1176, 1278
DpnII	GATC	3 cut(s)	574, 1174, 1276
DraI	TTTAAA	1 cut(s)	438
EaeI	YGGCCR	1 cut(s)	705
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
Ecl136II	GAGCTC	1 cut(s)	808
Eco24I	GRGCYC	2 cut(s)	810, 917
Eco32I	GATATC	2 cut(s)	994, 1104
Eco53kI	GAGCTC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	704
Eco88I	CYCGRG	2 cut(s)	39, 359
EcoICRI	GAGCTC	1 cut(s)	808
EcoO109I	RGGNCCY	2 cut(s)	442, 760
EcoRI	GAATTC	1 cut(s)	479
EcoRII	CCWGG	3 cut(s)	444, 838, 1192
EcoRV	GATATC	2 cut(s)	994, 1104
EcoT22I	ATGCAT	3 cut(s)	247, 1137, 1316
EcoT38I	GRGCYC	2 cut(s)	810, 917
Esp3I	CGTCTC	1 cut(s)	584
FaeI	CATG	7 cut(s)	260, 280, 644, 1002, 1042, 1139, 1264
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	7 cut(s)	256, 276, 640, 998, 1038, 1135, 1260
FbaI	TGATCA	1 cut(s)	1174
Fnu4HI	GCNGC	2 cut(s)	321, 604
FokI	GGATG	4 cut(s)	20, 518, 1124, 1238
FriOI	GRGCYC	2 cut(s)	810, 917
Fsp4HI	GCNGC	2 cut(s)	321, 604
FspBI	CTAG	1 cut(s)	99
FspI	TGCGCA	2 cut(s)	218, 293
GlaI	GCGC	2 cut(s)	218, 293
GluI	GCNGC	2 cut(s)	321, 604
GsaI	CCCAGC	1 cut(s)	885
GsuI	CTGGAG	2 cut(s)	179, 1280
HaeIII	GGCC	4 cut(s)	358, 444, 707, 761
HapII	CCGG	1 cut(s)	85
HhaI	GCGC	2 cut(s)	219, 294
Hin1II	CATG	7 cut(s)	260, 280, 644, 1002, 1042, 1139, 1264
Hin6I	GCGC	2 cut(s)	217, 292
HinP1I	GCGC	2 cut(s)	217, 292
HincII	GTYRAC	2 cut(s)	312, 726
HindII	GTYRAC	2 cut(s)	312, 726
HindIII	AAGCTT	1 cut(s)	597
HinfI	GANTC	9 cut(s)	362, 409, 626, 661, 667, 745, 1118, 1189, 1265
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	2 cut(s)	646, 854
Hpy166II	GTNNAC	3 cut(s)	312, 677, 726
Hpy188I	TCNGA	8 cut(s)	71, 126, 211, 367, 631, 666, 1101, 1276
Hpy188III	TCNNGA	8 cut(s)	41, 191, 511, 773, 803, 1172, 1255, 1280
Hpy8I	GTNNAC	3 cut(s)	312, 677, 726
HpyAV	CCTTC	4 cut(s)	197, 679, 970, 1311
HpyCH4III	ACNGT	1 cut(s)	1234
HpyCH4IV	ACGT	2 cut(s)	265, 789
HpyF3I	CTNAG	4 cut(s)	62, 561, 1221, 1249
HpySE526I	ACGT	2 cut(s)	265, 789
Hsp92II	CATG	7 cut(s)	260, 280, 644, 1002, 1042, 1139, 1264
HspAI	GCGC	2 cut(s)	217, 292
Ksp22I	TGATCA	1 cut(s)	1174
Kzo9I	GATC	3 cut(s)	574, 1174, 1276
LmnI	GCTCC	2 cut(s)	920, 936
Lsp1109I	GCAGC	2 cut(s)	332, 590
LweI	GCATC	4 cut(s)	232, 1036, 1122, 1301
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	2 cut(s)	265, 789
MaeIII	GTNAC	1 cut(s)	1001
MalI	GATC	3 cut(s)	576, 1176, 1278
MboI	GATC	3 cut(s)	574, 1174, 1276
MboII	GAAGA	8 cut(s)	9, 576, 662, 701, 960, 969, 977, 1127
MflI	RGATCY	1 cut(s)	1276
MhlI	GDGCHC	2 cut(s)	810, 917
MlsI	TGGCCA	1 cut(s)	707
MluNI	TGGCCA	1 cut(s)	707
MlyI	GAGTC	2 cut(s)	371, 1259
MmeI	TCCRAC	1 cut(s)	430
Mox20I	TGGCCA	1 cut(s)	707
Mph1103I	ATGCAT	3 cut(s)	247, 1137, 1316
MscI	TGGCCA	1 cut(s)	707
MseI	TTAA	6 cut(s)	339, 375, 437, 944, 1128, 1185
MslI	CAYNNNNRTG	1 cut(s)	1091
Msp20I	TGGCCA	1 cut(s)	707
MspCI	CTTAAG	1 cut(s)	1127
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	4 cut(s)	85, 446, 840, 1194
Mva1269I	GAATGC	2 cut(s)	1072, 1250
MvaI	CCWGG	3 cut(s)	446, 840, 1194
MvnI	CGCG	1 cut(s)	1256
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	3 cut(s)	574, 1174, 1276
NlaIII	CATG	7 cut(s)	260, 280, 644, 1002, 1042, 1139, 1264
NlaIV	GGNNCC	1 cut(s)	916
NruI	TCGCGA	1 cut(s)	1256
NsbI	TGCGCA	2 cut(s)	218, 293
NsiI	ATGCAT	3 cut(s)	247, 1137, 1316
NspI	RCATGY	2 cut(s)	1002, 1042
NspV	TTCGAA	1 cut(s)	594
PaqCI	CACCTGC	2 cut(s)	190, 285
PctI	GAATGC	2 cut(s)	1072, 1250
PfeI	GAWTC	7 cut(s)	409, 626, 661, 667, 745, 1118, 1189
PfoI	TCCNGGA	1 cut(s)	1192
PkrI	GCNGC	2 cut(s)	322, 605
PleI	GAGTC	2 cut(s)	370, 1259
PpsI	GAGTC	2 cut(s)	370, 1259
Psp124BI	GAGCTC	1 cut(s)	810
Psp1406I	AACGTT	1 cut(s)	265
Psp6I	CCWGG	3 cut(s)	444, 838, 1192
PspFI	CCCAGC	1 cut(s)	881
PspGI	CCWGG	3 cut(s)	444, 838, 1192
PspN4I	GGNNCC	1 cut(s)	916
PspPI	GGNCC	3 cut(s)	357, 442, 760
PsuI	RGATCY	1 cut(s)	1276
RruI	TCGCGA	1 cut(s)	1256
RsaI	GTAC	1 cut(s)	754
RsaNI	GTAC	1 cut(s)	753
RseI	CAYNNNNRTG	1 cut(s)	1091
SacI	GAGCTC	1 cut(s)	810
SaqAI	TTAA	6 cut(s)	339, 375, 437, 944, 1128, 1185
SatI	GCNGC	2 cut(s)	321, 604
Sau3AI	GATC	3 cut(s)	574, 1174, 1276
Sau96I	GGNCC	3 cut(s)	357, 442, 760
SchI	GAGTC	2 cut(s)	371, 1259
ScrFI	CCNGG	4 cut(s)	85, 446, 840, 1194
SduI	GDGCHC	2 cut(s)	810, 917
SfaNI	GCATC	4 cut(s)	232, 1036, 1122, 1301
SfcI	CTRYAG	1 cut(s)	1233
SfuI	TTCGAA	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	1091
SmlI	CTYRAG	2 cut(s)	803, 1127
SmoI	CTYRAG	2 cut(s)	803, 1127
SspMI	CTAG	1 cut(s)	99
SstI	GAGCTC	1 cut(s)	810
StyD4I	CCNGG	4 cut(s)	83, 444, 838, 1192
TaaI	ACNGT	1 cut(s)	1234
TaiI	ACGT	2 cut(s)	268, 792
TaqI	TCGA	3 cut(s)	192, 594, 990
TfiI	GAWTC	7 cut(s)	409, 626, 661, 667, 745, 1118, 1189
Tru1I	TTAA	6 cut(s)	339, 375, 437, 944, 1128, 1185
Tru9I	TTAA	6 cut(s)	339, 375, 437, 944, 1128, 1185
TscAI	CASTG	1 cut(s)	507
TseI	GCWGC	2 cut(s)	320, 603
TspDTI	ATGAA	5 cut(s)	186, 795, 803, 810, 1128
TspGWI	ACGGA	2 cut(s)	907, 1096
TspRI	CASTG	1 cut(s)	507
Vha464I	CTTAAG	1 cut(s)	1127
XapI	RAATTY	2 cut(s)	479, 616
XceI	RCATGY	2 cut(s)	1002, 1042
XspI	CTAG	1 cut(s)	99
Zsp2I	ATGCAT	3 cut(s)	247, 1137, 1316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.