MD00G1159300.v1.1

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
35181228 .. 35186948
5721 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1159300.v1.1.491

Sequence Viewer

Length: 1566 bp
ATGGGTTTCTTCATGCAGTTGAATATGGAAACCAAACTCAAGTCTGTAACAGCGACGCTCTTTCTGTGCTTCCTCGTGTTTCCGTTGGTTTTTTGCGAGTCCAACGATGGGTTGCTCCGGATTGGGCTCAAAAAGAGGAAATTGGACCAAAATAACATGGTTGCTTCCCAGATTGATTCCAAGGAAGGAGAGTCTCTGAGAGCTACGCTCCAAAAGTATCGTCTGGGTGGAAACTTGGCTGATTCTCAGGACATTGATATTGTATCTCTCAAAAATTATATGGATGCTCAATACTTTGGTGAGATCGGTATTGGCACTCCCCCTCAGAAGTTCACTGTGATATTTGATACTGGTAGTGCAAATTTGTGGGTGCCTTCGTCTAAGTGTTTTTTCTCGATTGCATGCTATTTACATCCAAAATACAAGTCAAGCAGCTCCAGCACCTACAACAAAAATGGTAAGCCTGCAGCCATCCAGTATGGAACTGGAGCTATTTCTGGGTTCTTCAGTGAAGATCATGTAACAGTTGGTGATCTTGTGGTTAAAGATCAGGAATTTATCGAGGCAACCAAGGAACCCGGCGTCACATTTGTGGTAGCCAAATTTGATGGCATACTTGGACTTGGATTTCAAGAGATTTCAGTTGGAAATGCTGTACCTGTGTGGTATAACATGGTCAATCAGGGTCTTCTGAAGGAACCAGTTTTCTCATTCTGGTTTAATCGTAATGCTGACGAAGAAGAAGGAGGTGAAATTGTTTTTGGTGGAGTGGATCCCAATCACTACAAGGGAGAGCACACATATGTTCCTGTTACACAGAAAGGCTATTGGCAGTTTGACATGGGTGATGTTATGATTGATGGTCAAACTACTGGATTTTGTGCTAGTGGCTGTTCGGCTATTGCTGATTCTGGAACTTCTTTGTTGGTTGGCCCAACGACTATTATTACTGAACTCAATCATGCCATTGGAGCCTCTGGCATTGTAAGTCAAGAATGCAAGACTGTAGTTGCAGAATATGGGGAAACCATAATTGAGAGAATTTTAGCAAAGGATCAACCAGCAAAAATCTGCTCTCAGATTGGTTTGTGCTCATTTGATGGGACTCATGGTGTTAGTATCGGAATCAAGAGTGTTGTGGAGAACACTCACAAGGTATCTGGTGACTTATCTGATGCAACGTGTTCTGCTTGTGAGATGACGGTTGTTTGGATGCAAAACCAGCTCAAGCAGAATCAGACACAGGAGCGAATTCTTGACTATGTGAATCAGCTCTGTGATCGGTTGCCTAGCCCAATGGGAGAATCTGCAGTTGATTGTGCTGGTTTGTCATCAATGCCCAGTGTTTCCTTCACTATCGGTGGAAGAACATTTGATCTCACCCCTGAACAGTACGTGCTCAAAGTTGGTGAGGGAGATGCAGCACAATGCATTAGTGGATTTACTGCCTTGGATGTCCCACCTCCCCGCGGACCTCTCTGGATCTTGGGTGATGTATTCATGGGTCGCTACCACACCGTATTTGACTATGGCAATGAGAGGATTGGGTTTGCAGAAGCTGCATAG

Protein Analysis

522

Amino Acids

56.68

Weight (kDa)

4.84

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 97 - 520 4.5e-119 Eukaryotic aspartyl protease
TAXi_N PF14543 98 - 255 1.8e-10 Xylanase inhibitor N-terminal
SapB_2 PF03489 331 - 364 1.3e-10 Saposin-like type B, region 2
SapB_1 PF05184 394 - 430 4.4e-14 Saposin-like type B, region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 370
AccII CGCG 1 cut(s) 1470
AccIII TCCGGA 1 cut(s) 117
AciI CCGC 2 cut(s) 1468, 1470
AclWI GGATC 4 cut(s) 767, 780, 1062, 1490
AcsI RAATTY 5 cut(s) 361, 554, 602, 1041, 1251
AcuI CTGAAG 2 cut(s) 490, 713
AcyI GRCGYC 1 cut(s) 582
AfaI GTAC 2 cut(s) 657, 1394
AfiI CCNNNNNNNGG 2 cut(s) 108, 1469
AflIII ACRYGT 1 cut(s) 1181
AgsI TTSAA 2 cut(s) 22, 632
AjuI GAANNNNNNNTTGG 2 cut(s) 744, 776
AleI CACNNNNGTG 1 cut(s) 590
AluBI AGCT 6 cut(s) 203, 435, 491, 1225, 1273, 1559
AluI AGCT 6 cut(s) 203, 435, 491, 1225, 1273, 1559
Alw21I GWGCWC 3 cut(s) 798, 1094, 1401
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 4 cut(s) 767, 780, 1062, 1490
AlwNI CAGNNNCTG 1 cut(s) 1559
Aor13HI TCCGGA 1 cut(s) 117
AoxI GGCC 1 cut(s) 931
ApeKI GCWGC 4 cut(s) 432, 467, 1421, 1559
ApoI RAATTY 5 cut(s) 361, 554, 602, 1041, 1251
ArsI GACNNNNNNTTYG 4 cut(s) 205, 237, 410, 442
AspS9I GGNCC 3 cut(s) 145, 932, 1472
AsuC2I CCSGG 1 cut(s) 579
AsuHPI GGTGA 8 cut(s) 311, 542, 761, 857, 1175, 1372, 1421, 1502
AvaII GGWCC 2 cut(s) 145, 1472
BamHI GGATCC 1 cut(s) 772
BanI GGYRCC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 129
BauI CACGAG 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 680
Bbv12I GWGCWC 3 cut(s) 798, 1094, 1401
BbvI GCAGC 4 cut(s) 444, 479, 1433, 1546
BccI CCATC 5 cut(s) 101, 479, 602, 854, 1094
BcnI CCSGG 1 cut(s) 579
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 2 cut(s) 885, 1290
BfmI CTRYAG 3 cut(s) 465, 1005, 1308
BisI GCNGC 4 cut(s) 433, 468, 1422, 1560
BlsI GCNGC 4 cut(s) 434, 469, 1423, 1561
Bme1390I CCNGG 1 cut(s) 579
Bme18I GGWCC 2 cut(s) 145, 1472
BmgT120I GGNCC 3 cut(s) 145, 932, 1472
BmiI GGNNCC 5 cut(s) 372, 576, 699, 774, 973
BmrFI CCNGG 1 cut(s) 579
BmrI ACTGGG 1 cut(s) 1335
BmsI GCATC 4 cut(s) 274, 1165, 1203, 1408
BmuI ACTGGG 1 cut(s) 1335
BpiI GAAGAC 1 cut(s) 680
BplI GAGNNNNNCTC 2 cut(s) 192, 224
BpmI CTGGAG 2 cut(s) 421, 507
BpuEI CTTGAG 2 cut(s) 23, 1211
BpuMI CCSGG 1 cut(s) 579
BsaAI YACGTR 1 cut(s) 1396
BsaBI GATNNNNATC 1 cut(s) 777
BsaHI GRCGYC 1 cut(s) 582
BsaJI CCNNGG 4 cut(s) 180, 570, 1449, 1468
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 1469
Bse1I ACTGG 6 cut(s) 355, 475, 490, 701, 877, 1341
Bse3DI GCAATG 1 cut(s) 1540
Bse8I GATNNNNATC 1 cut(s) 777
BseAI TCCGGA 1 cut(s) 117
BseDI CCNNGG 4 cut(s) 180, 570, 1449, 1468
BseGI GGATG 5 cut(s) 289, 412, 471, 1218, 1459
BseJI GATNNNNATC 1 cut(s) 777
BseLI CCNNNNNNNGG 2 cut(s) 108, 1469
BseMI GCAATG 1 cut(s) 1540
BseMII CTCAG 4 cut(s) 188, 260, 338, 1091
BseNI ACTGG 6 cut(s) 355, 475, 490, 701, 877, 1341
BseXI GCAGC 4 cut(s) 444, 479, 1433, 1546
Bsh1236I CGCG 1 cut(s) 1470
BshFI GGCC 1 cut(s) 933
BshNI GGYRCC 1 cut(s) 370
BsiHKAI GWGCWC 3 cut(s) 798, 1094, 1401
BsiSI CCGG 2 cut(s) 118, 579
BslFI GGGAC 2 cut(s) 1117, 1442
BslI CCNNNNNNNGG 2 cut(s) 108, 1469
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 2 cut(s) 1117, 1442
BsmI GAATGC 1 cut(s) 1001
BsnI GGCC 1 cut(s) 933
Bsp1286I GDGCHC 4 cut(s) 129, 798, 1094, 1401
Bsp13I TCCGGA 1 cut(s) 117
Bsp143I GATC 9 cut(s) 303, 514, 532, 547, 772, 1054, 1279, 1375, 1482
BspACI CCGC 2 cut(s) 1468, 1470
BspANI GGCC 1 cut(s) 933
BspCNI CTCAG 4 cut(s) 189, 259, 337, 1090
BspEI TCCGGA 1 cut(s) 117
BspFNI CGCG 1 cut(s) 1470
BspLI GGNNCC 5 cut(s) 372, 576, 699, 774, 973
BspMAI CTGCAG 2 cut(s) 469, 1312
BspPI GGATC 4 cut(s) 767, 780, 1062, 1490
BspT107I GGYRCC 1 cut(s) 370
BsrDI GCAATG 1 cut(s) 1540
BsrI ACTGG 6 cut(s) 355, 475, 490, 701, 877, 1341
BssECI CCNNGG 4 cut(s) 180, 570, 1449, 1468
BssMI GATC 9 cut(s) 303, 514, 532, 547, 772, 1054, 1279, 1375, 1482
BssNI GRCGYC 1 cut(s) 582
BssSI CACGAG 1 cut(s) 74
BssT1I CCWWGG 3 cut(s) 180, 570, 1449
Bst2BI CACGAG 1 cut(s) 74
Bst4CI ACNGT 6 cut(s) 337, 526, 1006, 1204, 1392, 1519
BstACI GRCGYC 1 cut(s) 582
BstAPI GCANNNNNTGC 1 cut(s) 1559
BstBAI YACGTR 1 cut(s) 1396
BstC8I GCNNGC 2 cut(s) 403, 465
BstDEI CTNAG 5 cut(s) 197, 246, 324, 381, 1077
BstDSI CCRYGG 1 cut(s) 1468
BstF5I GGATG 5 cut(s) 289, 412, 471, 1218, 1459
BstFNI CGCG 1 cut(s) 1470
BstKTI GATC 9 cut(s) 306, 517, 535, 550, 775, 1057, 1282, 1378, 1485
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 9 cut(s) 303, 514, 532, 547, 772, 1054, 1279, 1375, 1482
BstMWI GCNNNNNNNGC 4 cut(s) 438, 971, 1222, 1559
BstNSI RCATGY 1 cut(s) 405
BstSCI CCNGG 1 cut(s) 577
BstSFI CTRYAG 3 cut(s) 465, 1005, 1308
BstUI CGCG 1 cut(s) 1470
BstV1I GCAGC 4 cut(s) 444, 479, 1433, 1546
BstV2I GAAGAC 1 cut(s) 680
BstX2I RGATCY 2 cut(s) 772, 1482
BstYI RGATCY 2 cut(s) 772, 1482
BsuRI GGCC 1 cut(s) 933
BtgI CCRYGG 1 cut(s) 1468
BtsCI GGATG 5 cut(s) 289, 412, 471, 1218, 1459
BtsIMutI CAGTG 3 cut(s) 333, 514, 1348
Cac8I GCNNGC 2 cut(s) 403, 465
CaiI CAGNNNCTG 1 cut(s) 1559
Cfr13I GGNCC 3 cut(s) 145, 932, 1472
Cfr42I CCGCGG 1 cut(s) 1471
CseI GACGC 2 cut(s) 64, 571
Csp6I GTAC 2 cut(s) 656, 1393
CviAII CATG 9 cut(s) 13, 157, 402, 518, 673, 841, 962, 1109, 1501
CviQI GTAC 2 cut(s) 656, 1393
DdeI CTNAG 5 cut(s) 197, 246, 324, 381, 1077
DpnI GATC 9 cut(s) 305, 516, 534, 549, 774, 1056, 1281, 1377, 1484
DpnII GATC 9 cut(s) 303, 514, 532, 547, 772, 1054, 1279, 1375, 1482
Eco130I CCWWGG 3 cut(s) 180, 570, 1449
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 145, 1472
Eco57I CTGAAG 2 cut(s) 490, 713
EcoRI GAATTC 1 cut(s) 1251
EcoT14I CCWWGG 3 cut(s) 180, 570, 1449
EcoT22I ATGCAT 1 cut(s) 1433
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 3 cut(s) 180, 570, 1449
FaeI CATG 9 cut(s) 16, 160, 405, 521, 676, 844, 965, 1112, 1504
FaqI GGGAC 2 cut(s) 1117, 1442
FatI CATG 9 cut(s) 12, 156, 401, 517, 672, 840, 961, 1108, 1500
FauI CCCGC 1 cut(s) 1475
FauNDI CATATG 1 cut(s) 802
Fnu4HI GCNGC 4 cut(s) 433, 468, 1422, 1560
FokI GGATG 5 cut(s) 296, 399, 458, 1225, 1466
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 4 cut(s) 433, 468, 1422, 1560
FspBI CTAG 2 cut(s) 885, 1290
GluI GCNGC 4 cut(s) 433, 468, 1422, 1560
GsuI CTGGAG 2 cut(s) 421, 507
HaeIII GGCC 1 cut(s) 933
HapII CCGG 2 cut(s) 118, 579
HgaI GACGC 2 cut(s) 64, 571
Hin1I GRCGYC 1 cut(s) 582
Hin1II CATG 9 cut(s) 16, 160, 405, 521, 676, 844, 965, 1112, 1504
HpaII CCGG 2 cut(s) 118, 579
HphI GGTGA 8 cut(s) 311, 542, 761, 857, 1175, 1372, 1421, 1502
Hpy166II GTNNAC 1 cut(s) 333
Hpy188I TCNGA 7 cut(s) 198, 327, 693, 1080, 1124, 1174, 1239
Hpy8I GTNNAC 1 cut(s) 333
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 5 cut(s) 179, 384, 688, 737, 1360
HpyCH4III ACNGT 6 cut(s) 337, 526, 1006, 1204, 1392, 1519
HpyCH4IV ACGT 2 cut(s) 1181, 1395
HpyF10VI GCNNNNNNNGC 4 cut(s) 438, 971, 1222, 1559
HpyF3I CTNAG 5 cut(s) 197, 246, 324, 381, 1077
HpySE526I ACGT 2 cut(s) 1181, 1395
Hsp92I GRCGYC 1 cut(s) 582
Hsp92II CATG 9 cut(s) 16, 160, 405, 521, 676, 844, 965, 1112, 1504
Kpn2I TCCGGA 1 cut(s) 117
KspI CCGCGG 1 cut(s) 1471
Kzo9I GATC 9 cut(s) 303, 514, 532, 547, 772, 1054, 1279, 1375, 1482
LmnI GCTCC 6 cut(s) 120, 213, 440, 488, 971, 1246
Lsp1109I GCAGC 4 cut(s) 444, 479, 1433, 1546
LweI GCATC 4 cut(s) 274, 1165, 1203, 1408
MaeI CTAG 2 cut(s) 885, 1290
MaeII ACGT 2 cut(s) 1181, 1395
MaeIII GTNAC 5 cut(s) 46, 520, 583, 811, 1163
MalI GATC 9 cut(s) 305, 516, 534, 549, 774, 1056, 1281, 1377, 1484
MboI GATC 9 cut(s) 303, 514, 532, 547, 772, 1054, 1279, 1375, 1482
MboII GAAGA 6 cut(s) 496, 524, 680, 749, 752, 1377
MflI RGATCY 2 cut(s) 772, 1482
MhlI GDGCHC 4 cut(s) 129, 798, 1094, 1401
MluCI AATT 9 cut(s) 140, 274, 361, 554, 602, 753, 1032, 1041, 1251
MlyI GAGTC 3 cut(s) 107, 200, 1099
MmeI TCCRAC 2 cut(s) 126, 625
Mph1103I ATGCAT 1 cut(s) 1433
MroI TCCGGA 1 cut(s) 117
MseI TTAA 2 cut(s) 543, 720
MslI CAYNNNNRTG 2 cut(s) 590, 801
MspA1I CMGCKG 1 cut(s) 1470
MspI CCGG 2 cut(s) 118, 579
MspR9I CCNGG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 1001
MvnI CGCG 1 cut(s) 1470
MwoI GCNNNNNNNGC 4 cut(s) 438, 971, 1222, 1559
NciI CCSGG 1 cut(s) 579
NdeI CATATG 1 cut(s) 802
NdeII GATC 9 cut(s) 303, 514, 532, 547, 772, 1054, 1279, 1375, 1482
NlaIII CATG 9 cut(s) 16, 160, 405, 521, 676, 844, 965, 1112, 1504
NlaIV GGNNCC 5 cut(s) 372, 576, 699, 774, 973
NmuCI GTSAC 2 cut(s) 583, 1163
NsiI ATGCAT 1 cut(s) 1433
NspI RCATGY 1 cut(s) 405
OliI CACNNNNGTG 1 cut(s) 590
PaeI GCATGC 1 cut(s) 405
PctI GAATGC 1 cut(s) 1001
PfeI GAWTC 7 cut(s) 176, 242, 908, 1125, 1234, 1267, 1304
PkrI GCNGC 4 cut(s) 434, 469, 1423, 1561
PleI GAGTC 3 cut(s) 106, 199, 1099
PpsI GAGTC 3 cut(s) 106, 199, 1099
Ppu21I YACGTR 1 cut(s) 1396
PspN4I GGNNCC 5 cut(s) 372, 576, 699, 774, 973
PspPI GGNCC 3 cut(s) 145, 932, 1472
PstI CTGCAG 2 cut(s) 469, 1312
PstNI CAGNNNCTG 1 cut(s) 1559
PsuI RGATCY 2 cut(s) 772, 1482
RsaI GTAC 2 cut(s) 657, 1394
RsaNI GTAC 2 cut(s) 656, 1393
RseI CAYNNNNRTG 2 cut(s) 590, 801
SacII CCGCGG 1 cut(s) 1471
SaqAI TTAA 2 cut(s) 543, 720
SatI GCNGC 4 cut(s) 433, 468, 1422, 1560
Sau3AI GATC 9 cut(s) 303, 514, 532, 547, 772, 1054, 1279, 1375, 1482
Sau96I GGNCC 3 cut(s) 145, 932, 1472
SchI GAGTC 3 cut(s) 107, 200, 1099
ScrFI CCNGG 1 cut(s) 579
SduI GDGCHC 4 cut(s) 129, 798, 1094, 1401
SfaNI GCATC 4 cut(s) 274, 1165, 1203, 1408
SfcI CTRYAG 3 cut(s) 465, 1005, 1308
Sfr303I CCGCGG 1 cut(s) 1471
SgrBI CCGCGG 1 cut(s) 1471
SinI GGWCC 2 cut(s) 145, 1472
SmiMI CAYNNNNRTG 2 cut(s) 590, 801
SmlI CTYRAG 2 cut(s) 38, 1226
SmoI CTYRAG 2 cut(s) 38, 1226
SphI GCATGC 1 cut(s) 405
Sse9I AATT 9 cut(s) 140, 274, 361, 554, 602, 753, 1032, 1041, 1251
SsiI CCGC 2 cut(s) 1468, 1470
SspMI CTAG 2 cut(s) 885, 1290
StyD4I CCNGG 1 cut(s) 577
StyI CCWWGG 3 cut(s) 180, 570, 1449
TaaI ACNGT 6 cut(s) 337, 526, 1006, 1204, 1392, 1519
TaiI ACGT 2 cut(s) 1184, 1398
TaqI TCGA 2 cut(s) 395, 561
TasI AATT 9 cut(s) 140, 274, 361, 554, 602, 753, 1032, 1041, 1251
TfiI GAWTC 7 cut(s) 176, 242, 908, 1125, 1234, 1267, 1304
Tru1I TTAA 2 cut(s) 543, 720
Tru9I TTAA 2 cut(s) 543, 720
TscAI CASTG 3 cut(s) 340, 514, 1348
TseFI GTSAC 2 cut(s) 583, 1163
TseI GCWGC 4 cut(s) 432, 467, 1421, 1559
Tsp45I GTSAC 2 cut(s) 583, 1163
TspDTI ATGAA 1 cut(s) 1489
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 3 cut(s) 340, 514, 1348
VpaK11BI GGWCC 2 cut(s) 145, 1472
XapI RAATTY 5 cut(s) 361, 554, 602, 1041, 1251
XceI RCATGY 1 cut(s) 405
XcmI CCANNNNNNNNNTGG 1 cut(s) 482
XspI CTAG 2 cut(s) 885, 1290
Zsp2I ATGCAT 1 cut(s) 1433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.