Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001862

Physical Location & Seq

Genomic Coordinates Forward (+)

76006649 .. 76011654

Gene Structure 5006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG551200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGGTACCAAAATTAGGGCTTGTTTGGTGACTCTATTTCAGTTTCTGCTTCTGTCCCATGTGGTGCTCTCCACACCCAATGATGGGTTGGTTAGAATTGGACTTAAAAAGGTGAAATTGGATCAGACATCTCAGCTTCACAGGGAGACTAATGCTAAGAATGCACAAGGAAGTATGAGAGATCCTTTGAAGGAGTATCGTCTCCGCGGTGGGGATTCTTCTGGGGACACTGATATTGTTGAACTGAAGAACTATATGGATGCTCAGTATTTTGGGGAGATTGGTATTGGCACACCTGCTCAGAAGTTTACTGTGATATTTGATACTGGAAGTTCTAACCTTTGGGTGCCCTCGGCAAAGTGTTACTTCTCGGTGGCTTGCTTTTTTCACGCCAAGTATAAGTCTAGTCAGTCAAGTTCACACACAAAGAATGGGACATCTGCGGCTATCCAGTACGGAACTGGCGCAATTGCAGGTTTTTTTAGCCAGGACCATGTCACAGTTGGGAATCTTGTTGTTAAGGATCAAGATTTTATTGAGGCAACCAAGGAGCCTGGGATCACATTTGTGGCAGCTAAGTTTGATGGTATACTTGGACTTGGATTTCAAGAGATCTCAGTTGGAGGTGCTGTTCCTGTCTGGTATAATTTGGTCAATCAAGGTCTTGTTAAAGAACCAGTATTTTCATTTTGGTTAAATCGCAACACTGAAGGGGAAGAAGGGGGTGAGATTGTATTTGGTGGGATGGATTCTAACCATTACGTGGGTGAGCATACATATGTTCCAGTGACTCAAAAAGGCTATTGGCAGTTTGATATGGGGGATGTGCTAATTGGTGGTGAAACATCTGGACTTTGTGCTAGTGGTTGTTCAGCAATTGCTGATTCAGGAACTTCCCTATTGGCAGGGCCAACGACCATTATCACTCAAATAAATCATGCAATTGGAGCATCTGGTATTGTAAGCCAAGAGTGTAAGGCAGTTGTTGACCAGTATGGGAAAATTATACTGGAATTGTTGCTGGCTCAGGTATATGATTACAATAATTTATATGAGTTTTACTTAATTTTTATTTTCTGTTTAAATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

363

Amino Acids

39.45

Weight (kDa)

5.38

Isoelectric Point (pI)

28.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	89 - 322	1.4e-91	Eukaryotic aspartyl protease
TAXi_N	PF14543	90 - 248	2.8e-11	Xylanase inhibitor N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11910 AT1G11910 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290
fragaria_vesca	FvH4_3g23140 FvH4_3g23140 FvH4_6g42880 FvH4_6g42880
malus_domestica	MD00G1159300.v1.1 MD09G1111100.v1.1 MD11G1213600.v1.1 MD15G1413400.v1.1 MD17G1098900.v1.1 MD17G1282600.v1.1 MD17G1282700.v1.1
prunus_persica	Prupe.3G214900_v2.0.a1 Prupe.3G214900_v2.0.a1 Prupe.4G217700_v2.0.a1
pyrus_communis	pycom03g14920 pycom09g03360 pycom11g18820 pycom17g09430
rosa_chinensis	RchiOBHm_Chr2g0158811 RchiOBHm_Chr5g0040781
rosa_laevigata	RLG00000021115 RLG00000034001
rosa_multiflora	Rmu_sc0001579.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039910 Rroxscaffold_2G00090980
rosa_rugosa	Rorug02G0472700 Rorug05G0187200 Rorug05G0187300
rosa_samantha	Rh2AG538500 Rh2BG551200 Rh2CG521800 Rh2DG561000 Rh5AG273000 Rh5BG278100 Rh5CG310100 Rh5DG286000
rosa_wichuraiana	Rw2G044570 Rw5G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	304
Acc36I	ACCTGC	2 cut(s)	304, 464
Acc65I	GGTACC	1 cut(s)	5
AccB1I	GGYRCC	2 cut(s)	5, 346
AccB7I	CCANNNNNTGG	1 cut(s)	763
AccI	GTMKAC	1 cut(s)	589
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	205, 207, 443
AclWI	GGATC	4 cut(s)	129, 176, 531, 566
AcuI	CTGAAG	2 cut(s)	266, 729
AfaI	GTAC	2 cut(s)	7, 455
AfiI	CCNNNNNNNGG	5 cut(s)	15, 83, 84, 211, 763
AgsI	TTSAA	3 cut(s)	190, 242, 608
AjnI	CCWGG	2 cut(s)	486, 553
AleI	CACNNNNGTG	1 cut(s)	566
AloI	GAACNNNNNNTCC	2 cut(s)	615, 647
AluBI	AGCT	2 cut(s)	136, 575
AluI	AGCT	2 cut(s)	136, 575
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	2 cut(s)	140, 206
AlwI	GGATC	4 cut(s)	129, 176, 531, 566
AlwNI	CAGNNNCTG	1 cut(s)	46
AoxI	GGCC	1 cut(s)	908
ApeKI	GCWGC	1 cut(s)	572
Asp718I	GGTACC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	2 cut(s)	490, 908
AsuHPI	GGTGA	5 cut(s)	40, 124, 737, 779, 851
AvaII	GGWCC	1 cut(s)	490
BaeGI	GKGCMC	1 cut(s)	351
BanI	GGYRCC	2 cut(s)	5, 346
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	584
BccI	CCATC	3 cut(s)	77, 578, 739
BciT130I	CCWGG	2 cut(s)	488, 555
BcoDI	GTCTC	2 cut(s)	140, 206
BfaI	CTAG	2 cut(s)	405, 861
BfuAI	ACCTGC	2 cut(s)	304, 464
BglII	AGATCT	1 cut(s)	612
BisI	GCNGC	2 cut(s)	444, 573
BlsI	GCNGC	2 cut(s)	445, 574
Bme1390I	CCNGG	2 cut(s)	488, 555
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	490, 908
BmiI	GGNNCC	3 cut(s)	7, 348, 552
BmrFI	CCNGG	2 cut(s)	488, 555
BmsI	GCATC	2 cut(s)	250, 959
Bpu10I	CCTNAGC	1 cut(s)	1026
BsaAI	YACGTR	1 cut(s)	763
BsaJI	CCNNGG	4 cut(s)	205, 351, 546, 554
BsaXI	ACNNNNNCTCC	2 cut(s)	615, 645
Bsc4I	CCNNNNNNNGG	5 cut(s)	15, 83, 84, 211, 763
Bse1I	ACTGG	7 cut(s)	331, 451, 466, 677, 785, 991, 1014
BseBI	CCWGG	2 cut(s)	488, 555
BseDI	CCNNGG	4 cut(s)	205, 351, 546, 554
BseGI	GGATG	3 cut(s)	265, 750, 829
BseLI	CCNNNNNNNGG	5 cut(s)	15, 83, 84, 211, 763
BseMII	CTCAG	5 cut(s)	146, 278, 314, 630, 1040
BseNI	ACTGG	7 cut(s)	331, 451, 466, 677, 785, 991, 1014
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	584
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	910
BshNI	GGYRCC	2 cut(s)	5, 346
BsiHKAI	GWGCWC	1 cut(s)	69
BslFI	GGGAC	3 cut(s)	40, 239, 448
BslI	CCNNNNNNNGG	5 cut(s)	15, 83, 84, 211, 763
BsmAI	GTCTC	2 cut(s)	140, 206
BsmBI	CGTCTC	1 cut(s)	206
BsmFI	GGGAC	3 cut(s)	40, 239, 448
BsmI	GAATGC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	910
Bsp1286I	GDGCHC	2 cut(s)	69, 351
Bsp143I	GATC	5 cut(s)	121, 181, 523, 558, 612
BspACI	CCGC	3 cut(s)	205, 207, 443
BspANI	GGCC	1 cut(s)	910
BspCNI	CTCAG	5 cut(s)	145, 277, 313, 629, 1039
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	7, 348, 552
BspMI	ACCTGC	2 cut(s)	304, 464
BspPI	GGATC	4 cut(s)	129, 176, 531, 566
BspT107I	GGYRCC	2 cut(s)	5, 346
BsrI	ACTGG	7 cut(s)	331, 451, 466, 677, 785, 991, 1014
BssECI	CCNNGG	4 cut(s)	205, 351, 546, 554
BssMI	GATC	5 cut(s)	121, 181, 523, 558, 612
BssNAI	GTATAC	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	546
Bst1107I	GTATAC	1 cut(s)	590
Bst2UI	CCWGG	2 cut(s)	488, 555
Bst4CI	ACNGT	2 cut(s)	313, 502
BstBAI	YACGTR	1 cut(s)	763
BstC8I	GCNNGC	2 cut(s)	379, 1023
BstDEI	CTNAG	7 cut(s)	132, 156, 264, 300, 576, 616, 1026
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	3 cut(s)	265, 750, 829
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	5 cut(s)	124, 184, 526, 561, 615
BstMAI	GTCTC	2 cut(s)	140, 206
BstMBI	GATC	5 cut(s)	121, 181, 523, 558, 612
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 947
BstNI	CCWGG	2 cut(s)	488, 555
BstSCI	CCNGG	2 cut(s)	486, 553
BstSLI	GKGCMC	1 cut(s)	351
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	584
BstX2I	RGATCY	2 cut(s)	181, 612
BstYI	RGATCY	2 cut(s)	181, 612
BstZ17I	GTATAC	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	910
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	265, 750, 829
BtsIMutI	CAGTG	3 cut(s)	228, 705, 792
BveI	ACCTGC	2 cut(s)	304, 464
Cac8I	GCNNGC	2 cut(s)	379, 1023
CaiI	CAGNNNCTG	1 cut(s)	46
CfoI	GCGC	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	490, 908
Cfr42I	CCGCGG	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	6, 454
CviAII	CATG	3 cut(s)	59, 494, 938
CviQI	GTAC	2 cut(s)	6, 454
DdeI	CTNAG	7 cut(s)	132, 156, 264, 300, 576, 616, 1026
DpnI	GATC	5 cut(s)	123, 183, 525, 560, 614
DpnII	GATC	5 cut(s)	121, 181, 523, 558, 612
DraI	TTTAAA	1 cut(s)	1083
Eco130I	CCWWGG	1 cut(s)	546
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	266, 729
EcoRII	CCWGG	2 cut(s)	486, 553
EcoT14I	CCWWGG	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
Esp3I	CGTCTC	1 cut(s)	206
FaeI	CATG	3 cut(s)	62, 497, 941
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FaqI	GGGAC	3 cut(s)	40, 239, 448
FatI	CATG	3 cut(s)	58, 493, 937
FauNDI	CATATG	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	2 cut(s)	444, 573
FokI	GGATG	3 cut(s)	272, 757, 836
Fsp4HI	GCNGC	2 cut(s)	444, 573
FspBI	CTAG	2 cut(s)	405, 861
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	2 cut(s)	444, 573
HaeIII	GGCC	1 cut(s)	910
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	3 cut(s)	62, 497, 941
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HincII	GTYRAC	1 cut(s)	988
HindII	GTYRAC	1 cut(s)	988
HinfI	GANTC	6 cut(s)	31, 215, 508, 749, 790, 884
HphI	GGTGA	5 cut(s)	40, 124, 737, 779, 851
Hpy166II	GTNNAC	4 cut(s)	309, 419, 590, 988
Hpy188I	TCNGA	2 cut(s)	126, 303
Hpy188III	TCNNGA	4 cut(s)	527, 608, 849, 888
Hpy8I	GTNNAC	4 cut(s)	309, 419, 590, 988
HpyAV	CCTTC	3 cut(s)	184, 704, 713
HpyCH4III	ACNGT	2 cut(s)	313, 502
HpyCH4IV	ACGT	1 cut(s)	762
HpyCH4V	TGCA	3 cut(s)	164, 473, 941
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 947
HpyF3I	CTNAG	7 cut(s)	132, 156, 264, 300, 576, 616, 1026
HpySE526I	ACGT	1 cut(s)	762
Hsp92II	CATG	3 cut(s)	62, 497, 941
HspAI	GCGC	1 cut(s)	465
KpnI	GGTACC	1 cut(s)	9
KspI	CCGCGG	1 cut(s)	208
Kzo9I	GATC	5 cut(s)	121, 181, 523, 558, 612
LmnI	GCTCC	2 cut(s)	550, 947
Lsp1109I	GCAGC	1 cut(s)	584
LweI	GCATC	2 cut(s)	250, 959
MaeI	CTAG	2 cut(s)	405, 861
MaeII	ACGT	1 cut(s)	762
MaeIII	GTNAC	4 cut(s)	28, 362, 496, 787
MalI	GATC	5 cut(s)	123, 183, 525, 560, 614
MboI	GATC	5 cut(s)	121, 181, 523, 558, 612
MboII	GAAGA	3 cut(s)	210, 259, 728
MfeI	CAATTG	3 cut(s)	468, 876, 942
MflI	RGATCY	2 cut(s)	181, 612
MhlI	GDGCHC	2 cut(s)	69, 351
MlyI	GAGTC	2 cut(s)	25, 784
MmeI	TCCRAC	1 cut(s)	601
MnlI	CCTC	3 cut(s)	361, 532, 617
MseI	TTAA	6 cut(s)	105, 519, 669, 695, 1064, 1082
MslI	CAYNNNNRTG	2 cut(s)	566, 777
MspA1I	CMGCKG	1 cut(s)	207
MspR9I	CCNGG	2 cut(s)	488, 555
MunI	CAATTG	3 cut(s)	468, 876, 942
Mva1269I	GAATGC	1 cut(s)	166
MvaI	CCWGG	2 cut(s)	488, 555
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	161, 947
NdeI	CATATG	1 cut(s)	778
NdeII	GATC	5 cut(s)	121, 181, 523, 558, 612
NlaIII	CATG	3 cut(s)	62, 497, 941
NlaIV	GGNNCC	3 cut(s)	7, 348, 552
NmeAIII	GCCGAG	1 cut(s)	332
NmuCI	GTSAC	3 cut(s)	28, 496, 787
OliI	CACNNNNGTG	1 cut(s)	566
PaqCI	CACCTGC	1 cut(s)	304
PctI	GAATGC	1 cut(s)	166
PfeI	GAWTC	4 cut(s)	215, 508, 749, 884
PflFI	GACNNNGTC	1 cut(s)	494
PflMI	CCANNNNNTGG	1 cut(s)	763
PkrI	GCNGC	2 cut(s)	445, 574
PleI	GAGTC	2 cut(s)	25, 784
PpsI	GAGTC	2 cut(s)	25, 784
Ppu21I	YACGTR	1 cut(s)	763
Psp6I	CCWGG	2 cut(s)	486, 553
PspGI	CCWGG	2 cut(s)	486, 553
PspN4I	GGNNCC	3 cut(s)	7, 348, 552
PspPI	GGNCC	2 cut(s)	490, 908
PstNI	CAGNNNCTG	1 cut(s)	46
PsuI	RGATCY	2 cut(s)	181, 612
PsyI	GACNNNGTC	1 cut(s)	494
RsaI	GTAC	2 cut(s)	7, 455
RsaNI	GTAC	2 cut(s)	6, 454
RseI	CAYNNNNRTG	2 cut(s)	566, 777
SacII	CCGCGG	1 cut(s)	208
SaqAI	TTAA	6 cut(s)	105, 519, 669, 695, 1064, 1082
SatI	GCNGC	2 cut(s)	444, 573
Sau3AI	GATC	5 cut(s)	121, 181, 523, 558, 612
Sau96I	GGNCC	2 cut(s)	490, 908
SchI	GAGTC	2 cut(s)	25, 784
ScrFI	CCNGG	2 cut(s)	488, 555
SduI	GDGCHC	2 cut(s)	69, 351
SfaNI	GCATC	2 cut(s)	250, 959
Sfr303I	CCGCGG	1 cut(s)	208
SgrBI	CCGCGG	1 cut(s)	208
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	2 cut(s)	566, 777
SsiI	CCGC	3 cut(s)	205, 207, 443
SspMI	CTAG	2 cut(s)	405, 861
StyD4I	CCNGG	2 cut(s)	486, 553
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	2 cut(s)	313, 502
TaiI	ACGT	1 cut(s)	765
TauI	GCSGC	1 cut(s)	446
TfiI	GAWTC	4 cut(s)	215, 508, 749, 884
Tru1I	TTAA	6 cut(s)	105, 519, 669, 695, 1064, 1082
Tru9I	TTAA	6 cut(s)	105, 519, 669, 695, 1064, 1082
TscAI	CASTG	3 cut(s)	235, 712, 792
TseFI	GTSAC	3 cut(s)	28, 496, 787
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	3 cut(s)	28, 496, 787
TspDTI	ATGAA	1 cut(s)	675
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	3 cut(s)	235, 712, 792
Tth111I	GACNNNGTC	1 cut(s)	494
Van91I	CCANNNNNTGG	1 cut(s)	763
VpaK11BI	GGWCC	1 cut(s)	490
XcmI	CCANNNNNNNNNTGG	3 cut(s)	85, 458, 500
XmiI	GTMKAC	1 cut(s)	589
XspI	CTAG	2 cut(s)	405, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.