Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001862

Physical Location & Seq

Genomic Coordinates Reverse (-)

60402569 .. 60404037

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0472700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGTGTTCTTGCAGCGATTGCCAAGAATTTGGATAGACTAATCGGGCCCGGAGTGACACTTCTTTATCCTTTATATGCAACAATGAGAGCAATAGAGAGCGCTTCTACACTAGACGATCAGCAGTGGCTTACATATTGGGTGTTATATTCTTTGATCACATTATTCGAGCTCTTCTGTTGGAAAGTCCTCGCTTGGATTCCAATATGGCCATATATGAAGCTATTGTTCTGCATCTGGCTGGTGTTGCCAATATTCAACGGGGCAGCCTATGTTTATGAGAATATTGTGAGAAAATATGTGAAGCCCGGGGACTATAGCAATTGGAGCTCATCGTCATCATCAAAACACCCAGAGGGACAGAAGAAGGTTATCCAAATGTTGAGCCTCGATGGAAGGAAGTCGGTAGAGCGTTTTATCGATCACCATGGACCAGAGGCTTTGGAGAGGGTCGTCAAAGCGGCTGAAAGAGAAGCTAGGAAGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

162

Amino Acids

18.69

Weight (kDa)

9.04

Isoelectric Point (pI)

25.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	24 - 100	2.5e-27	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11910 AT1G11910 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290
fragaria_vesca	FvH4_3g23140 FvH4_3g23140 FvH4_6g42880 FvH4_6g42880
malus_domestica	MD00G1159300.v1.1 MD09G1111100.v1.1 MD11G1213600.v1.1 MD15G1413400.v1.1 MD17G1098900.v1.1 MD17G1282600.v1.1 MD17G1282700.v1.1
prunus_persica	Prupe.3G214900_v2.0.a1 Prupe.3G214900_v2.0.a1 Prupe.4G217700_v2.0.a1
pyrus_communis	pycom03g14920 pycom09g03360 pycom11g18820 pycom17g09430
rosa_chinensis	RchiOBHm_Chr2g0158811 RchiOBHm_Chr5g0040781
rosa_laevigata	RLG00000021115 RLG00000034001
rosa_multiflora	Rmu_sc0001579.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039910 Rroxscaffold_2G00090980
rosa_rugosa	Rorug02G0472700 Rorug05G0187200 Rorug05G0187300
rosa_samantha	Rh2AG538500 Rh2BG551200 Rh2CG521800 Rh2DG561000 Rh5AG273000 Rh5BG278100 Rh5CG310100 Rh5DG286000
rosa_wichuraiana	Rw2G044570 Rw5G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	461
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	28
AfeI	AGCGCT	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	259
AluBI	AGCT	4 cut(s)	172, 223, 330, 476
AluI	AGCT	4 cut(s)	172, 223, 330, 476
Alw21I	GWGCWC	2 cut(s)	174, 332
Ama87I	CYCGRG	1 cut(s)	308
Aor51HI	AGCGCT	1 cut(s)	103
AoxI	GGCC	2 cut(s)	47, 209
ApaI	GGGCCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	14, 266
ApoI	RAATTY	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	3 cut(s)	47, 48, 431
AsuC2I	CCSGG	3 cut(s)	51, 309, 310
AsuHPI	GGTGA	1 cut(s)	416
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	51
BalI	TGGCCA	1 cut(s)	211
BanII	GRGCYC	3 cut(s)	51, 174, 332
Bbv12I	GWGCWC	2 cut(s)	174, 332
BbvI	GCAGC	2 cut(s)	26, 278
BccI	CCATC	1 cut(s)	386
BclI	TGATCA	1 cut(s)	156
BcnI	CCSGG	3 cut(s)	51, 309, 310
BfaI	CTAG	2 cut(s)	113, 477
BfmI	CTRYAG	1 cut(s)	316
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	3 cut(s)	15, 267, 462
BlsI	GCNGC	3 cut(s)	16, 268, 463
Bme1390I	CCNGG	3 cut(s)	51, 309, 310
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	3 cut(s)	47, 48, 431
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	3 cut(s)	51, 309, 310
BmsI	GCATC	1 cut(s)	243
BpuMI	CCSGG	3 cut(s)	51, 309, 310
Bsa29I	ATCGAT	1 cut(s)	420
BsaJI	CCNNGG	3 cut(s)	308, 309, 427
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	3 cut(s)	308, 309, 427
BseSI	GKGCMC	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	26, 278
BshFI	GGCC	2 cut(s)	49, 211
BshVI	ATCGAT	1 cut(s)	420
BsiHKAI	GWGCWC	2 cut(s)	174, 332
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	2 cut(s)	51, 309
BslFI	GGGAC	2 cut(s)	326, 372
BsmFI	GGGAC	2 cut(s)	326, 372
BsnI	GGCC	2 cut(s)	49, 211
BsoBI	CYCGRG	1 cut(s)	308
Bsp120I	GGGCCC	1 cut(s)	47
Bsp1286I	GDGCHC	3 cut(s)	51, 174, 332
Bsp143I	GATC	3 cut(s)	118, 156, 421
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	1 cut(s)	461
BspANI	GGCC	2 cut(s)	49, 211
BspDI	ATCGAT	1 cut(s)	420
BspLI	GGNNCC	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	179
BssECI	CCNNGG	3 cut(s)	308, 309, 427
BssMI	GATC	3 cut(s)	118, 156, 421
BssT1I	CCWWGG	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstDSI	CCRYGG	1 cut(s)	427
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	3 cut(s)	121, 159, 424
BstMBI	GATC	3 cut(s)	118, 156, 421
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 247, 327
BstSCI	CCNGG	3 cut(s)	49, 307, 308
BstSFI	CTRYAG	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	26, 278
BstXI	CCANNNNNNTGG	1 cut(s)	31
Bsu15I	ATCGAT	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	49, 211
BsuTUI	ATCGAT	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	427
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	131, 484
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	3 cut(s)	47, 48, 431
Cfr9I	CCCGGG	1 cut(s)	308
ClaI	ATCGAT	1 cut(s)	420
CviAII	CATG	1 cut(s)	428
DpnI	GATC	3 cut(s)	120, 158, 423
DpnII	GATC	3 cut(s)	118, 156, 421
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Ecl136II	GAGCTC	2 cut(s)	172, 330
Eco130I	CCWWGG	1 cut(s)	427
Eco24I	GRGCYC	3 cut(s)	51, 174, 332
Eco47I	GGWCC	1 cut(s)	431
Eco47III	AGCGCT	1 cut(s)	103
Eco53kI	GAGCTC	2 cut(s)	172, 330
Eco88I	CYCGRG	1 cut(s)	308
EcoICRI	GAGCTC	2 cut(s)	172, 330
EcoT14I	CCWWGG	1 cut(s)	427
EcoT38I	GRGCYC	3 cut(s)	51, 174, 332
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	1 cut(s)	431
FaqI	GGGAC	2 cut(s)	326, 372
FatI	CATG	1 cut(s)	427
FbaI	TGATCA	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	15, 267, 462
FriOI	GRGCYC	3 cut(s)	51, 174, 332
Fsp4HI	GCNGC	3 cut(s)	15, 267, 462
FspBI	CTAG	2 cut(s)	113, 477
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	3 cut(s)	15, 267, 462
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	2 cut(s)	49, 211
HapII	CCGG	2 cut(s)	51, 309
HhaI	GCGC	1 cut(s)	104
Hin1II	CATG	1 cut(s)	431
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	2 cut(s)	51, 309
HphI	GGTGA	1 cut(s)	416
HpyAV	CCTTC	2 cut(s)	361, 390
HpyCH4V	TGCA	3 cut(s)	14, 80, 234
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 247, 327
Hsp92II	CATG	1 cut(s)	431
HspAI	GCGC	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	156
Kzo9I	GATC	3 cut(s)	118, 156, 421
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	1 cut(s)	327
LpnPI	CCDG	6 cut(s)	64, 223, 227, 322, 366, 447
Lsp1109I	GCAGC	2 cut(s)	26, 278
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	113, 477
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	120, 158, 423
MboI	GATC	3 cut(s)	118, 156, 421
MboII	GAAGA	2 cut(s)	166, 376
MfeI	CAATTG	1 cut(s)	322
MhlI	GDGCHC	3 cut(s)	51, 174, 332
MlsI	TGGCCA	1 cut(s)	211
MluCI	AATT	2 cut(s)	28, 322
MluNI	TGGCCA	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	161
MnlI	CCTC	5 cut(s)	200, 349, 398, 430, 441
Mox20I	TGGCCA	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	211
Msp20I	TGGCCA	1 cut(s)	211
MspI	CCGG	2 cut(s)	51, 309
MspR9I	CCNGG	3 cut(s)	51, 309, 310
MunI	CAATTG	1 cut(s)	322
MwoI	GCNNNNNNNGC	3 cut(s)	20, 247, 327
NciI	CCSGG	3 cut(s)	51, 309, 310
NcoI	CCATGG	1 cut(s)	427
NdeII	GATC	3 cut(s)	118, 156, 421
NlaIII	CATG	1 cut(s)	431
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	1 cut(s)	55
PciSI	GCTCTTC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	199
PkrI	GCNGC	3 cut(s)	16, 268, 463
Psp124BI	GAGCTC	2 cut(s)	174, 332
PspN4I	GGNNCC	1 cut(s)	49
PspOMI	GGGCCC	1 cut(s)	47
PspPI	GGNCC	3 cut(s)	47, 48, 431
SacI	GAGCTC	2 cut(s)	174, 332
SapI	GCTCTTC	1 cut(s)	179
SatI	GCNGC	3 cut(s)	15, 267, 462
Sau3AI	GATC	3 cut(s)	118, 156, 421
Sau96I	GGNCC	3 cut(s)	47, 48, 431
ScrFI	CCNGG	3 cut(s)	51, 309, 310
SduI	GDGCHC	3 cut(s)	51, 174, 332
SetI	ASST	5 cut(s)	174, 225, 332, 372, 478
SfaNI	GCATC	1 cut(s)	243
SfcI	CTRYAG	1 cut(s)	316
SinI	GGWCC	1 cut(s)	431
SmaI	CCCGGG	1 cut(s)	310
Sse9I	AATT	2 cut(s)	28, 322
SsiI	CCGC	1 cut(s)	461
SspI	AATATT	2 cut(s)	255, 286
SspMI	CTAG	2 cut(s)	113, 477
SstI	GAGCTC	2 cut(s)	174, 332
StyD4I	CCNGG	3 cut(s)	49, 307, 308
StyI	CCWWGG	1 cut(s)	427
TaqI	TCGA	3 cut(s)	168, 390, 420
TasI	AATT	2 cut(s)	28, 322
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	199
TscAI	CASTG	1 cut(s)	131
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	14, 266
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	233
TspMI	CCCGGG	1 cut(s)	308
TspRI	CASTG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	28
XmaI	CCCGGG	1 cut(s)	308
XspI	CTAG	2 cut(s)	113, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.