FvH4_6g42880

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
33301796 .. 33306940
5145 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42880.t1

Sequence Viewer

Length: 1578 bp
ATGGGTACCAAAATTAGGGTTTGTTTGGTGACTCTGTTTCAGTTTCTGCTACTGACCCATGTGGTGCTTTCCACATCCAATGATGGGTTGGTCAGAATTGGACTTAAAAAGGTGAAATTGGATCAGACATCTCAAATTCATAGGGATACTAATGCTCAGAATGCACAAGGAAGTGTTAGAGCTCCTTTGAAGGAGTATCGTCTCCGTGGGGATTATTCTGGGGACACTGATATTGTTGAACTGAAGAACTATATGGATGCTCAGTATTTTGGGGAGATTGGTATCGGCACACCTGTCCAGAAGTTTACTGTTATATTTGATACCGGAAGTTCTAACCTTTGGGTGCCCTCGGCAAAGTGTTACTTCTCGGTTGCTTGCTTTTTTCACTCCAAGTATAAGTCTAGTCAATCAAGTTCACACACAAAGAATGCACTAAATTCCACTATAATTTCTCGTGTAGGAACATCTGCGGCAATACAGTATGGAACTGGCGCAATTGCAGGTTTTTTCAGCCAGGACCATGTCACAGTTGGGAATCTTGTTGTTAAGGATCAAGATTTTATTGAGGCAACCAAGGAGCCTGGCATCACATTTGTGGCAGCTAAGTTTGATGGCATACTTGGACTTGGATACCAAGAGATCTCAGTTGGAGGTGCTGTTCCCGTCTGGTATAATATGGTCAGTCAAGGTCTTGTTAAAGAACCAGTATTTTCATTCTGGTTAAATCGCAACACTGAAGGGGAAGAAGGGGGTGAGATTGTATTTGGTGGGATGGATTCTAACCACTATGTGGGTGAGCATACATATGTCCCAGTGACTCAAAAAGGCTATTGGCAGTTTGATATGGGGGATGTGCTAATTGGTGGTGAATCATCTGGACTTTGCGCTAGTGGTTGTTCAGCAATTGCTGATTCAGGAACTTCCTTATTGGCTGGGCCAACGACCATTATCACTCAAATAAATCATGCAATTGGAGCATCTGGTATTGTAAGCCAAGAATGTAAGGCAATTGTTGACCAGTATGGGAAAATTATACTGGAAATGTTGCTGGCTCAGGTTAAACCCCAAAGAATCTGCTCTCAAATTGGTTTATGTACTTTTGACGGGACTCGTGGTGTGAGTATGGGCATCGAAACTGTGGTCGATCAGAATACAGAAACTAAATCTGATGGCGTGCATGATGCTGCATGTACTGCTTGTGAGATGGCAGTAGTATGGATACAGAATCAGCTAAGGCTAAATCTTAATCAGACAGAGGAGCAGATCTTGAACTATGCAAATGAGCTCTGTGAACGACTGCCCAGTCCAAATGGTGAATCAGCTGTTCAATGTAACACTCTATCCTCCTTGCCCACTATATCATTTACCATTGGTGGTAAAGTATTTGACCTTGCTCCAGAGCAGTATGTTCTCAAAATGGGTGAGGGAGCTGCAGCACAATGCCTTAGTGGATTTATAGCTCTAGATGTGGCTCCACCTCGAGGACCACTGTGGATTCTGGGAGATATTTTCATGGGTCAGTATCACACAGTGTTCGACTACGGGAACGCTAATGTTGGATTTGCAGTAGCAGCTTAG

Protein Analysis

526

Amino Acids

56.55

Weight (kDa)

5.13

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 88 - 523 6.1e-111 Eukaryotic aspartyl protease
TAXi_N PF14543 89 - 257 3.6e-12 Xylanase inhibitor N-terminal
SapB_2 PF03489 332 - 365 8.9e-13 Saposin-like type B, region 2
SapB_1 PF05184 396 - 434 1.6e-09 Saposin-like type B, region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1302
AbsI CCTCGAGG 1 cut(s) 1479
Acc36I ACCTGC 1 cut(s) 491
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 2 cut(s) 5, 343
AccB7I CCANNNNNTGG 1 cut(s) 790
AciI CCGC 1 cut(s) 470
AclWI GGATC 2 cut(s) 129, 558
AcsI RAATTY 2 cut(s) 135, 436
AcuI CTGAAG 2 cut(s) 263, 756
AdeI CACNNNGTG 2 cut(s) 790, 1531
AfaI GTAC 3 cut(s) 7, 1096, 1192
AfiI CCNNNNNNNGG 4 cut(s) 15, 84, 790, 1481
AgsI TTSAA 4 cut(s) 190, 239, 1270, 1328
AjnI CCWGG 2 cut(s) 513, 580
AleI CACNNNNGTG 1 cut(s) 593
AloI GAACNNNNNNTCC 2 cut(s) 642, 674
AluBI AGCT 8 cut(s) 182, 602, 1231, 1285, 1322, 1430, 1460, 1574
AluI AGCT 8 cut(s) 182, 602, 1231, 1285, 1322, 1430, 1460, 1574
Alw21I GWGCWC 2 cut(s) 184, 1287
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 2 cut(s) 129, 558
AlwNI CAGNNNCTG 1 cut(s) 46
Ama87I CYCGRG 1 cut(s) 1479
AoxI GGCC 1 cut(s) 935
ApeKI GCWGC 5 cut(s) 599, 1184, 1430, 1433, 1571
ApoI RAATTY 2 cut(s) 135, 436
ArsI GACNNNNNNTTYG 2 cut(s) 1125, 1157
Asp718I GGTACC 1 cut(s) 5
AspLEI GCGC 2 cut(s) 494, 887
AspS9I GGNCC 3 cut(s) 517, 935, 1484
AsuHPI GGTGA 7 cut(s) 40, 124, 764, 806, 878, 1325, 1433
AvaI CYCGRG 1 cut(s) 1479
AvaII GGWCC 2 cut(s) 517, 1484
BaeGI GKGCMC 1 cut(s) 348
BanI GGYRCC 2 cut(s) 5, 343
BanII GRGCYC 2 cut(s) 184, 1287
BauI CACGAG 2 cut(s) 453, 1110
Bbv12I GWGCWC 2 cut(s) 184, 1287
BbvI GCAGC 4 cut(s) 611, 1171, 1417, 1445
BccI CCATC 5 cut(s) 77, 605, 766, 1163, 1198
BciT130I CCWGG 2 cut(s) 515, 582
BciVI GTATCC 3 cut(s) 139, 623, 1212
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 3 cut(s) 402, 888, 1463
BfmI CTRYAG 1 cut(s) 1431
BfuAI ACCTGC 1 cut(s) 491
BfuI GTATCC 3 cut(s) 139, 623, 1212
BglII AGATCT 2 cut(s) 639, 1263
BisI GCNGC 6 cut(s) 471, 600, 1185, 1431, 1434, 1572
BlsI GCNGC 6 cut(s) 472, 601, 1186, 1432, 1435, 1573
Bme1390I CCNGG 2 cut(s) 515, 582
Bme18I GGWCC 2 cut(s) 517, 1484
BmeT110I CYCGRG 1 cut(s) 1479
BmgT120I GGNCC 3 cut(s) 517, 935, 1484
BmiI GGNNCC 4 cut(s) 7, 345, 579, 1473
BmrFI CCNGG 2 cut(s) 515, 582
BmrI ACTGGG 2 cut(s) 806, 1296
BmsI GCATC 5 cut(s) 247, 594, 986, 1137, 1171
BmuI ACTGGG 2 cut(s) 806, 1296
BpmI CTGGAG 1 cut(s) 1380
Bpu10I CCTNAGC 2 cut(s) 1053, 1232
BsaBI GATNNNNATC 1 cut(s) 281
BsaJI CCNNGG 3 cut(s) 205, 348, 573
BsaWI WCCGGW 1 cut(s) 323
BsaXI ACNNNNNCTCC 2 cut(s) 642, 672
Bsc4I CCNNNNNNNGG 4 cut(s) 15, 84, 790, 1481
Bse1I ACTGG 6 cut(s) 493, 704, 812, 1018, 1041, 1302
Bse8I GATNNNNATC 1 cut(s) 281
BseBI CCWGG 2 cut(s) 515, 582
BseDI CCNNGG 3 cut(s) 205, 348, 573
BseGI GGATG 4 cut(s) 74, 262, 777, 856
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 4 cut(s) 15, 84, 790, 1481
BseMII CTCAG 4 cut(s) 170, 275, 657, 1067
BseNI ACTGG 6 cut(s) 493, 704, 812, 1018, 1041, 1302
BseRI GAGGAG 1 cut(s) 1271
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 4 cut(s) 611, 1171, 1417, 1445
BseYI CCCAGC 1 cut(s) 932
BshFI GGCC 1 cut(s) 937
BshNI GGYRCC 2 cut(s) 5, 343
BsiHKAI GWGCWC 2 cut(s) 184, 1287
BsiHKCI CYCGRG 1 cut(s) 1479
BsiSI CCGG 1 cut(s) 324
BslFI GGGAC 3 cut(s) 236, 794, 1120
BslI CCNNNNNNNGG 4 cut(s) 15, 84, 790, 1481
BsmAI GTCTC 1 cut(s) 206
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 3 cut(s) 236, 794, 1120
BsmI GAATGC 2 cut(s) 166, 433
BsnI GGCC 1 cut(s) 937
BsoBI CYCGRG 1 cut(s) 1479
Bsp1286I GDGCHC 3 cut(s) 184, 348, 1287
Bsp143I GATC 5 cut(s) 121, 550, 639, 1144, 1263
BspACI CCGC 1 cut(s) 470
BspANI GGCC 1 cut(s) 937
BspCNI CTCAG 4 cut(s) 169, 274, 656, 1066
BspLI GGNNCC 4 cut(s) 7, 345, 579, 1473
BspMAI CTGCAG 1 cut(s) 1435
BspMI ACCTGC 1 cut(s) 491
BspPI GGATC 2 cut(s) 129, 558
BspT107I GGYRCC 2 cut(s) 5, 343
BsrI ACTGG 6 cut(s) 493, 704, 812, 1018, 1041, 1302
BssECI CCNNGG 3 cut(s) 205, 348, 573
BssMI GATC 5 cut(s) 121, 550, 639, 1144, 1263
BssSI CACGAG 2 cut(s) 453, 1110
BssT1I CCWWGG 1 cut(s) 573
Bst2BI CACGAG 2 cut(s) 453, 1110
Bst2UI CCWGG 2 cut(s) 515, 582
Bst4CI ACNGT 6 cut(s) 310, 480, 529, 1138, 1491, 1531
BstAPI GCANNNNNTGC 1 cut(s) 1193
BstC8I GCNNGC 3 cut(s) 376, 1050, 1175
BstDEI CTNAG 8 cut(s) 156, 261, 603, 643, 1053, 1232, 1445, 1575
BstDSI CCRYGG 1 cut(s) 205
BstF5I GGATG 4 cut(s) 74, 262, 777, 856
BstHHI GCGC 2 cut(s) 494, 887
BstKTI GATC 5 cut(s) 124, 553, 642, 1147, 1266
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 5 cut(s) 121, 550, 639, 1144, 1263
BstMWI GCNNNNNNNGC 4 cut(s) 161, 974, 1193, 1571
BstNI CCWGG 2 cut(s) 515, 582
BstNSI RCATGY 1 cut(s) 1191
BstSCI CCNGG 2 cut(s) 513, 580
BstSFI CTRYAG 1 cut(s) 1431
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 4 cut(s) 611, 1171, 1417, 1445
BstX2I RGATCY 2 cut(s) 639, 1263
BstYI RGATCY 2 cut(s) 639, 1263
BsuI GTATCC 3 cut(s) 139, 623, 1212
BsuRI GGCC 1 cut(s) 937
BtgI CCRYGG 1 cut(s) 205
BtsCI GGATG 4 cut(s) 74, 262, 777, 856
BtsIMutI CAGTG 5 cut(s) 225, 732, 819, 1487, 1536
BveI ACCTGC 1 cut(s) 491
Cac8I GCNNGC 3 cut(s) 376, 1050, 1175
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 2 cut(s) 494, 887
Cfr13I GGNCC 3 cut(s) 517, 935, 1484
Csp6I GTAC 3 cut(s) 6, 1095, 1191
CviAII CATG 6 cut(s) 59, 521, 965, 1178, 1188, 1513
CviQI GTAC 3 cut(s) 6, 1095, 1191
DdeI CTNAG 8 cut(s) 156, 261, 603, 643, 1053, 1232, 1445, 1575
DpnI GATC 5 cut(s) 123, 552, 641, 1146, 1265
DpnII GATC 5 cut(s) 121, 550, 639, 1144, 1263
DraIII CACNNNGTG 2 cut(s) 790, 1531
DrdI GACNNNNNNGTC 1 cut(s) 1302
DseDI GACNNNNNNGTC 1 cut(s) 1302
Ecl136II GAGCTC 2 cut(s) 182, 1285
Eco130I CCWWGG 1 cut(s) 573
Eco24I GRGCYC 2 cut(s) 184, 1287
Eco47I GGWCC 2 cut(s) 517, 1484
Eco53kI GAGCTC 2 cut(s) 182, 1285
Eco57I CTGAAG 2 cut(s) 263, 756
Eco88I CYCGRG 1 cut(s) 1479
EcoICRI GAGCTC 2 cut(s) 182, 1285
EcoRII CCWGG 2 cut(s) 513, 580
EcoT14I CCWWGG 1 cut(s) 573
EcoT38I GRGCYC 2 cut(s) 184, 1287
ErhI CCWWGG 1 cut(s) 573
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 6 cut(s) 62, 524, 968, 1181, 1191, 1516
FalI AAGNNNNNCTT 2 cut(s) 347, 379
FaqI GGGAC 3 cut(s) 236, 794, 1120
FatI CATG 6 cut(s) 58, 520, 964, 1177, 1187, 1512
FauNDI CATATG 1 cut(s) 805
Fnu4HI GCNGC 6 cut(s) 471, 600, 1185, 1431, 1434, 1572
FokI GGATG 4 cut(s) 61, 269, 784, 863
FriOI GRGCYC 2 cut(s) 184, 1287
Fsp4HI GCNGC 6 cut(s) 471, 600, 1185, 1431, 1434, 1572
FspBI CTAG 3 cut(s) 402, 888, 1463
GlaI GCGC 2 cut(s) 493, 886
GluI GCNGC 6 cut(s) 471, 600, 1185, 1431, 1434, 1572
GsaI CCCAGC 1 cut(s) 936
GsuI CTGGAG 1 cut(s) 1380
HaeIII GGCC 1 cut(s) 937
HapII CCGG 1 cut(s) 324
HhaI GCGC 2 cut(s) 494, 887
Hin1II CATG 6 cut(s) 62, 524, 968, 1181, 1191, 1516
Hin6I GCGC 2 cut(s) 492, 885
HinP1I GCGC 2 cut(s) 492, 885
HincII GTYRAC 1 cut(s) 1015
HindII GTYRAC 1 cut(s) 1015
HpaII CCGG 1 cut(s) 324
HphI GGTGA 7 cut(s) 40, 124, 764, 806, 878, 1325, 1433
Hpy166II GTNNAC 4 cut(s) 306, 416, 1015, 1292
Hpy188I TCNGA 6 cut(s) 95, 126, 159, 1149, 1168, 1251
Hpy188III TCNNGA 7 cut(s) 298, 554, 876, 915, 1267, 1397, 1463
Hpy8I GTNNAC 4 cut(s) 306, 416, 1015, 1292
HpyAV CCTTC 3 cut(s) 184, 731, 740
HpyCH4III ACNGT 6 cut(s) 310, 480, 529, 1138, 1491, 1531
HpyCH4V TGCA 9 cut(s) 164, 431, 500, 968, 1177, 1187, 1277, 1433, 1565
HpyF10VI GCNNNNNNNGC 4 cut(s) 161, 974, 1193, 1571
HpyF3I CTNAG 8 cut(s) 156, 261, 603, 643, 1053, 1232, 1445, 1575
Hsp92II CATG 6 cut(s) 62, 524, 968, 1181, 1191, 1516
HspAI GCGC 2 cut(s) 492, 885
KpnI GGTACC 1 cut(s) 9
Kzo9I GATC 5 cut(s) 121, 550, 639, 1144, 1263
LmnI GCTCC 7 cut(s) 187, 577, 974, 1258, 1399, 1427, 1477
Lsp1109I GCAGC 4 cut(s) 611, 1171, 1417, 1445
LweI GCATC 5 cut(s) 247, 594, 986, 1137, 1171
MaeI CTAG 3 cut(s) 402, 888, 1463
MaeIII GTNAC 5 cut(s) 28, 359, 523, 814, 1331
MalI GATC 5 cut(s) 123, 552, 641, 1146, 1265
MboI GATC 5 cut(s) 121, 550, 639, 1144, 1263
MboII GAAGA 2 cut(s) 256, 755
MfeI CAATTG 4 cut(s) 495, 903, 969, 1008
MflI RGATCY 2 cut(s) 639, 1263
MhlI GDGCHC 3 cut(s) 184, 348, 1287
MlyI GAGTC 3 cut(s) 25, 811, 1102
MmeI TCCRAC 2 cut(s) 628, 1537
MnlI CCTC 8 cut(s) 358, 559, 644, 1249, 1354, 1417, 1475, 1488
MseI TTAA 6 cut(s) 105, 546, 696, 722, 1059, 1245
MslI CAYNNNNRTG 2 cut(s) 593, 804
MspA1I CMGCKG 1 cut(s) 1322
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 2 cut(s) 515, 582
MunI CAATTG 4 cut(s) 495, 903, 969, 1008
Mva1269I GAATGC 2 cut(s) 166, 433
MvaI CCWGG 2 cut(s) 515, 582
MwoI GCNNNNNNNGC 4 cut(s) 161, 974, 1193, 1571
NdeI CATATG 1 cut(s) 805
NdeII GATC 5 cut(s) 121, 550, 639, 1144, 1263
NlaIII CATG 6 cut(s) 62, 524, 968, 1181, 1191, 1516
NlaIV GGNNCC 4 cut(s) 7, 345, 579, 1473
NmeAIII GCCGAG 1 cut(s) 329
NmuCI GTSAC 3 cut(s) 28, 523, 814
NspI RCATGY 1 cut(s) 1191
OliI CACNNNNGTG 1 cut(s) 593
PaeR7I CTCGAG 1 cut(s) 1479
PctI GAATGC 2 cut(s) 166, 433
PfeI GAWTC 8 cut(s) 535, 776, 869, 911, 1071, 1225, 1316, 1495
PflFI GACNNNGTC 1 cut(s) 521
PflMI CCANNNNNTGG 1 cut(s) 790
PkrI GCNGC 6 cut(s) 472, 601, 1186, 1432, 1435, 1573
PleI GAGTC 3 cut(s) 25, 811, 1102
PpsI GAGTC 3 cut(s) 25, 811, 1102
Psp124BI GAGCTC 2 cut(s) 184, 1287
Psp6I CCWGG 2 cut(s) 513, 580
PspFI CCCAGC 1 cut(s) 932
PspGI CCWGG 2 cut(s) 513, 580
PspN4I GGNNCC 4 cut(s) 7, 345, 579, 1473
PspPI GGNCC 3 cut(s) 517, 935, 1484
PspXI VCTCGAGB 1 cut(s) 1479
PstI CTGCAG 1 cut(s) 1435
PstNI CAGNNNCTG 1 cut(s) 46
PsuI RGATCY 2 cut(s) 639, 1263
PsyI GACNNNGTC 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 1322
RsaI GTAC 3 cut(s) 7, 1096, 1192
RsaNI GTAC 3 cut(s) 6, 1095, 1191
RseI CAYNNNNRTG 2 cut(s) 593, 804
SacI GAGCTC 2 cut(s) 184, 1287
SaqAI TTAA 6 cut(s) 105, 546, 696, 722, 1059, 1245
SatI GCNGC 6 cut(s) 471, 600, 1185, 1431, 1434, 1572
Sau3AI GATC 5 cut(s) 121, 550, 639, 1144, 1263
Sau96I GGNCC 3 cut(s) 517, 935, 1484
SchI GAGTC 3 cut(s) 25, 811, 1102
ScrFI CCNGG 2 cut(s) 515, 582
SduI GDGCHC 3 cut(s) 184, 348, 1287
SfaNI GCATC 5 cut(s) 247, 594, 986, 1137, 1171
SfcI CTRYAG 1 cut(s) 1431
Sfr274I CTCGAG 1 cut(s) 1479
SinI GGWCC 2 cut(s) 517, 1484
SlaI CTCGAG 1 cut(s) 1479
SmiMI CAYNNNNRTG 2 cut(s) 593, 804
SmlI CTYRAG 1 cut(s) 1479
SmoI CTYRAG 1 cut(s) 1479
SsiI CCGC 1 cut(s) 470
SspMI CTAG 3 cut(s) 402, 888, 1463
SstI GAGCTC 2 cut(s) 184, 1287
StyD4I CCNGG 2 cut(s) 513, 580
StyI CCWWGG 1 cut(s) 573
TaaI ACNGT 6 cut(s) 310, 480, 529, 1138, 1491, 1531
TaqI TCGA 4 cut(s) 1131, 1143, 1480, 1536
TatI WGTACW 2 cut(s) 1094, 1190
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 8 cut(s) 535, 776, 869, 911, 1071, 1225, 1316, 1495
Tru1I TTAA 6 cut(s) 105, 546, 696, 722, 1059, 1245
Tru9I TTAA 6 cut(s) 105, 546, 696, 722, 1059, 1245
TscAI CASTG 5 cut(s) 232, 739, 819, 1494, 1536
TseFI GTSAC 3 cut(s) 28, 523, 814
TseI GCWGC 5 cut(s) 599, 1184, 1430, 1433, 1571
Tsp45I GTSAC 3 cut(s) 28, 523, 814
TspDTI ATGAA 3 cut(s) 128, 702, 1501
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 5 cut(s) 232, 739, 819, 1494, 1536
Tth111I GACNNNGTC 1 cut(s) 521
Van91I CCANNNNNTGG 1 cut(s) 790
VpaK11BI GGWCC 2 cut(s) 517, 1484
XapI RAATTY 2 cut(s) 135, 436
XbaI TCTAGA 1 cut(s) 1462
XceI RCATGY 1 cut(s) 1191
XcmI CCANNNNNNNNNTGG 2 cut(s) 85, 527
XhoI CTCGAG 1 cut(s) 1479
XspI CTAG 3 cut(s) 402, 888, 1463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.