MD11G1213600.v1.1

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Forward (+)
31237505 .. 31242297
4793 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1213600.v1.1.491

Sequence Viewer

Length: 1629 bp
ATGGGGGAAAAGCGCACTCCTTTCCTTTCTCATCGTCTTCCTGCCTACATACTCAAACTCGACTGTGACTCCGGTGGATTAAACATGGAAACCAAACTCAAATCTGTTACAGCGACGCTCTTTCTGTGCTTCTTCTTGTGTCCGTTGGTTTTCTGCGAGTCCAATGATGGGTTGCTCCGGATTGGTCTCAAAAAGAGGAAACTTGATCAAAATAACAGGGTTGCTTCCCAGATTGATTCCAATGAAGGAGAGGCTCTGAGAGCTGCTCTCCAAAAGTATCGTCTGGGTGGGAATTTGGCTGATTCTGAGGACATTGATATTGTATCTCTCAAGAATTACATGGATGCTCAATACTTTGGTGAGATTGGTATTGGCACTCCCCCTCAGAAGTTCACTGTGATATTTGATACTGGTAGTTCAAATTTGTGGGTGCCTTCATCTAAGTGTTATTTCTCGATTGCGTGCTATTTACATCCGAAATACAAGTCAAGCAGTTCGAGCACCTACAACAAAAATGGTAAGCCTGCAGCCATCCAGTACGGAACGGGAGCTATTTCTGGGTTCTTTAGTGAAGATCATGTAACAGTTGGTGATCTTGTGGTTAAAGATCAGGAATTTATTGAGGCAACAAAGGAACCCGGCATCACATTCCTGGTAGCCAAATTTGATGGCATACTTGGACTTGGATTTCAAGAGATTTCAGTTGGAAATGCTGTACCTGTGTGGTATAACATGGTCAATCAGGGTCTCCTGAAGGAACCAGTTTTCTCATTCTGGTTTAACCGTAATGCTGACGAAGAAGAAGGAGGTGAAATTGTTTTTGGTGGAGTGGACCCCAATCACTACAAGGGAAAGCACACATATGTTCCTGTTACACAGAAAGGCTATTGGCAGTTTGACATGGGTGATGTTATGATTGATGGTCAAACTACTGGATTTTGTGCTGATGGCTGTTCGGCAATTGCTGATTCTGGAACTTCTTTGTTGGTTGGCCCAACGACTATTATCACTGAACTTAATCATGCCATTGGAGCCTCTGGGATTGTAAGTCAAGAGTGCAAGACTGTAGTTGCACAATATGGGGAAACCATAATTGAGAGAATTTTAGCAAAGGATCAACCAGCGAAAATCTGCTCTAAGATTGGTTTGTGCTCATTCGATGGGACTCGTGGTGTTAGTATTGGAATCAAGAGTGTTGTGGAGGAGAACGCTCACAAGGTTTCTGGTGGCTTATCTGATGCGACGTGTTCTGCTTGTGAGATGACGGTTGTATGGATGCAAAACCAGCTCAAGCAGAATCAGACACAGGAACGAATTCTTGACTATGTGAATCAGCTCTGCGAACGGTTGCCTAGCCCAATGGGAGAATCTGCAGTTGATTGTGGTGGTTTGTCTTCCATGCCCAATGTTTCCTTTACAATTGGTGGAAGAACATTTGATCTCACCCCTGAGCAGTATGTGCTCAAGGTAGGCGAGGGAGATGTAGCACAATGCATTAGTGGATTTACTGCTTTGGATGTCCCACCTCCCCGCGGACCTCTCTGGATCTTGGGAGATGTATTCATGGGTCGCTATCATACTGTGTTTGACTATGGCAATGAGAGAATCGGTTTTGCGGAAGCTGCATAG

Protein Analysis

543

Amino Acids

59.0

Weight (kDa)

5.06

Isoelectric Point (pI)

34.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 117 - 541 2.6e-119 Eukaryotic aspartyl protease
TAXi_N PF14543 118 - 275 4.8e-11 Xylanase inhibitor N-terminal
SapB_2 PF03489 351 - 384 9.3e-11 Saposin-like type B, region 2
SapB_1 PF05184 415 - 451 9.4e-14 Saposin-like type B, region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 430
AccII CGCG 1 cut(s) 1533
AccIII TCCGGA 1 cut(s) 177
AciI CCGC 3 cut(s) 1531, 1533, 1616
AclWI GGATC 2 cut(s) 1122, 1553
AcsI RAATTY 6 cut(s) 292, 421, 614, 662, 1101, 1314
AcuI CTGAAG 1 cut(s) 773
AfaI GTAC 2 cut(s) 539, 717
AfiI CCNNNNNNNGG 2 cut(s) 168, 1532
AflIII ACRYGT 1 cut(s) 1244
AgsI TTSAA 2 cut(s) 420, 692
AjiI CACGTC 1 cut(s) 1245
AjnI CCWGG 1 cut(s) 651
AjuI GAANNNNNNNTTGG 2 cut(s) 804, 836
AluBI AGCT 5 cut(s) 263, 551, 1288, 1336, 1622
AluI AGCT 5 cut(s) 263, 551, 1288, 1336, 1622
Alw21I GWGCWC 3 cut(s) 503, 1154, 1464
Alw26I GTCTC 2 cut(s) 191, 752
AlwI GGATC 2 cut(s) 1122, 1553
Aor13HI TCCGGA 1 cut(s) 177
AoxI GGCC 1 cut(s) 991
ApeKI GCWGC 3 cut(s) 263, 527, 1622
ApoI RAATTY 6 cut(s) 292, 421, 614, 662, 1101, 1314
ArsI GACNNNNNNTTYG 4 cut(s) 265, 297, 470, 502
Asp700I GAANNNNTTC 1 cut(s) 1314
AspLEI GCGC 1 cut(s) 15
AspS9I GGNCC 3 cut(s) 832, 992, 1535
AsuC2I CCSGG 1 cut(s) 639
AsuHPI GGTGA 5 cut(s) 371, 602, 821, 917, 1435
AvaII GGWCC 2 cut(s) 832, 1535
BanI GGYRCC 1 cut(s) 430
BauI CACGAG 1 cut(s) 1167
BbsI GAAGAC 2 cut(s) 29, 1386
Bbv12I GWGCWC 3 cut(s) 503, 1154, 1464
BbvI GCAGC 3 cut(s) 250, 539, 1609
BccI CCATC 6 cut(s) 161, 539, 662, 914, 941, 1154
BciT130I CCWGG 1 cut(s) 653
BclI TGATCA 1 cut(s) 205
BcnI CCSGG 1 cut(s) 639
BcoDI GTCTC 2 cut(s) 191, 752
BfaI CTAG 1 cut(s) 1353
BfmI CTRYAG 3 cut(s) 525, 1065, 1371
BisI GCNGC 3 cut(s) 264, 528, 1623
BlsI GCNGC 3 cut(s) 265, 529, 1624
Bme1390I CCNGG 2 cut(s) 639, 653
Bme18I GGWCC 2 cut(s) 832, 1535
BmgBI CACGTC 1 cut(s) 1245
BmgT120I GGNCC 3 cut(s) 832, 992, 1535
BmiI GGNNCC 5 cut(s) 432, 636, 759, 834, 1033
BmrFI CCNGG 2 cut(s) 639, 653
BmsI GCATC 4 cut(s) 334, 651, 1228, 1266
BpiI GAAGAC 2 cut(s) 29, 1386
BplI GAGNNNNNCTC 4 cut(s) 250, 282, 252, 284
Bpu10I CCTNAGC 1 cut(s) 1449
BpuEI CTTGAG 3 cut(s) 314, 1274, 1448
BpuMI CCSGG 1 cut(s) 639
BsaI GGTCTC 2 cut(s) 191, 752
BsaJI CCNNGG 1 cut(s) 1531
BsaWI WCCGGW 2 cut(s) 71, 177
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 1532
Bse1I ACTGG 4 cut(s) 415, 535, 761, 937
Bse3DI GCAATG 1 cut(s) 1603
BseAI TCCGGA 1 cut(s) 177
BseBI CCWGG 1 cut(s) 653
BseDI CCNNGG 1 cut(s) 1531
BseGI GGATG 5 cut(s) 349, 472, 531, 1281, 1522
BseLI CCNNNNNNNGG 2 cut(s) 168, 1532
BseMI GCAATG 1 cut(s) 1603
BseMII CTCAG 4 cut(s) 248, 297, 398, 1440
BseNI ACTGG 4 cut(s) 415, 535, 761, 937
BseRI GAGGAG 1 cut(s) 1217
BseXI GCAGC 3 cut(s) 250, 539, 1609
Bsh1236I CGCG 1 cut(s) 1533
BshFI GGCC 1 cut(s) 993
BshNI GGYRCC 1 cut(s) 430
BsiHKAI GWGCWC 3 cut(s) 503, 1154, 1464
BsiSI CCGG 3 cut(s) 72, 178, 639
BslFI GGGAC 2 cut(s) 1177, 1505
BslI CCNNNNNNNGG 2 cut(s) 168, 1532
BsmAI GTCTC 2 cut(s) 191, 752
BsmFI GGGAC 2 cut(s) 1177, 1505
BsnI GGCC 1 cut(s) 993
Bso31I GGTCTC 2 cut(s) 191, 752
Bsp1286I GDGCHC 3 cut(s) 503, 1154, 1464
Bsp13I TCCGGA 1 cut(s) 177
Bsp143I GATC 7 cut(s) 205, 574, 592, 607, 1114, 1438, 1545
BspACI CCGC 3 cut(s) 1531, 1533, 1616
BspANI GGCC 1 cut(s) 993
BspCNI CTCAG 4 cut(s) 249, 298, 397, 1441
BspEI TCCGGA 1 cut(s) 177
BspFNI CGCG 1 cut(s) 1533
BspLI GGNNCC 5 cut(s) 432, 636, 759, 834, 1033
BspMAI CTGCAG 2 cut(s) 529, 1375
BspPI GGATC 2 cut(s) 1122, 1553
BspT107I GGYRCC 1 cut(s) 430
BspTNI GGTCTC 2 cut(s) 191, 752
BsrDI GCAATG 1 cut(s) 1603
BsrI ACTGG 4 cut(s) 415, 535, 761, 937
BssECI CCNNGG 1 cut(s) 1531
BssMI GATC 7 cut(s) 205, 574, 592, 607, 1114, 1438, 1545
BssSI CACGAG 1 cut(s) 1167
Bst2BI CACGAG 1 cut(s) 1167
Bst2UI CCWGG 1 cut(s) 653
Bst4CI ACNGT 8 cut(s) 65, 397, 586, 785, 1066, 1267, 1347, 1582
BstAPI GCANNNNNTGC 1 cut(s) 1459
BstC8I GCNNGC 2 cut(s) 463, 525
BstDEI CTNAG 6 cut(s) 257, 306, 384, 441, 1137, 1449
BstDSI CCRYGG 1 cut(s) 1531
BstF5I GGATG 5 cut(s) 349, 472, 531, 1281, 1522
BstFNI CGCG 1 cut(s) 1533
BstHHI GCGC 1 cut(s) 15
BstKTI GATC 7 cut(s) 208, 577, 595, 610, 1117, 1441, 1548
BstMAI GTCTC 2 cut(s) 191, 752
BstMBI GATC 7 cut(s) 205, 574, 592, 607, 1114, 1438, 1545
BstMWI GCNNNNNNNGC 6 cut(s) 260, 498, 1031, 1285, 1459, 1622
BstNI CCWGG 1 cut(s) 653
BstSCI CCNGG 2 cut(s) 637, 651
BstSFI CTRYAG 3 cut(s) 525, 1065, 1371
BstUI CGCG 1 cut(s) 1533
BstV1I GCAGC 3 cut(s) 250, 539, 1609
BstV2I GAAGAC 2 cut(s) 29, 1386
BstX2I RGATCY 1 cut(s) 1545
BstYI RGATCY 1 cut(s) 1545
BsuRI GGCC 1 cut(s) 993
BtgI CCRYGG 1 cut(s) 1531
BtrI CACGTC 1 cut(s) 1245
BtsCI GGATG 5 cut(s) 349, 472, 531, 1281, 1522
BtsIMutI CAGTG 2 cut(s) 393, 1008
Cac8I GCNNGC 2 cut(s) 463, 525
CfoI GCGC 1 cut(s) 15
Cfr13I GGNCC 3 cut(s) 832, 992, 1535
Cfr42I CCGCGG 1 cut(s) 1534
CseI GACGC 1 cut(s) 124
Csp6I GTAC 2 cut(s) 538, 716
CviAII CATG 8 cut(s) 85, 340, 578, 733, 901, 1022, 1399, 1564
CviQI GTAC 2 cut(s) 538, 716
DdeI CTNAG 6 cut(s) 257, 306, 384, 441, 1137, 1449
DpnI GATC 7 cut(s) 207, 576, 594, 609, 1116, 1440, 1547
DpnII GATC 7 cut(s) 205, 574, 592, 607, 1114, 1438, 1545
Eco31I GGTCTC 2 cut(s) 191, 752
Eco47I GGWCC 2 cut(s) 832, 1535
Eco57I CTGAAG 1 cut(s) 773
EcoRI GAATTC 1 cut(s) 1314
EcoRII CCWGG 1 cut(s) 651
EcoT22I ATGCAT 1 cut(s) 1496
FaeI CATG 8 cut(s) 88, 343, 581, 736, 904, 1025, 1402, 1567
FaqI GGGAC 2 cut(s) 1177, 1505
FatI CATG 8 cut(s) 84, 339, 577, 732, 900, 1021, 1398, 1563
FauI CCCGC 1 cut(s) 1538
FauNDI CATATG 1 cut(s) 862
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 264, 528, 1623
FokI GGATG 5 cut(s) 356, 459, 518, 1288, 1529
Fsp4HI GCNGC 3 cut(s) 264, 528, 1623
FspBI CTAG 1 cut(s) 1353
GlaI GCGC 1 cut(s) 14
GluI GCNGC 3 cut(s) 264, 528, 1623
HaeIII GGCC 1 cut(s) 993
HapII CCGG 3 cut(s) 72, 178, 639
HgaI GACGC 1 cut(s) 124
HhaI GCGC 1 cut(s) 15
Hin1II CATG 8 cut(s) 88, 343, 581, 736, 904, 1025, 1402, 1567
Hin6I GCGC 1 cut(s) 13
HinP1I GCGC 1 cut(s) 13
HpaII CCGG 3 cut(s) 72, 178, 639
HphI GGTGA 5 cut(s) 371, 602, 821, 917, 1435
Hpy166II GTNNAC 2 cut(s) 393, 832
Hpy188I TCNGA 6 cut(s) 258, 307, 387, 477, 1237, 1302
Hpy8I GTNNAC 2 cut(s) 393, 832
Hpy99I CGWCG 2 cut(s) 118, 1246
HpyAV CCTTC 4 cut(s) 239, 444, 748, 797
HpyCH4III ACNGT 8 cut(s) 65, 397, 586, 785, 1066, 1267, 1347, 1582
HpyCH4IV ACGT 1 cut(s) 1244
HpyCH4V TGCA 7 cut(s) 527, 1059, 1073, 1279, 1373, 1494, 1625
HpyF10VI GCNNNNNNNGC 6 cut(s) 260, 498, 1031, 1285, 1459, 1622
HpyF3I CTNAG 6 cut(s) 257, 306, 384, 441, 1137, 1449
HpySE526I ACGT 1 cut(s) 1244
Hsp92II CATG 8 cut(s) 88, 343, 581, 736, 904, 1025, 1402, 1567
HspAI GCGC 1 cut(s) 13
Kpn2I TCCGGA 1 cut(s) 177
Ksp22I TGATCA 1 cut(s) 205
KspI CCGCGG 1 cut(s) 1534
Kzo9I GATC 7 cut(s) 205, 574, 592, 607, 1114, 1438, 1545
LmnI GCTCC 3 cut(s) 180, 548, 1031
Lsp1109I GCAGC 3 cut(s) 250, 539, 1609
LweI GCATC 4 cut(s) 334, 651, 1228, 1266
MaeI CTAG 1 cut(s) 1353
MaeII ACGT 1 cut(s) 1244
MaeIII GTNAC 4 cut(s) 65, 106, 580, 871
MalI GATC 7 cut(s) 207, 576, 594, 609, 1116, 1440, 1547
MboI GATC 7 cut(s) 205, 574, 592, 607, 1114, 1438, 1545
MboII GAAGA 7 cut(s) 29, 124, 584, 809, 812, 1386, 1440
MfeI CAATTG 2 cut(s) 960, 1419
MflI RGATCY 1 cut(s) 1545
MhlI GDGCHC 3 cut(s) 503, 1154, 1464
MlyI GAGTC 3 cut(s) 62, 167, 1159
MmeI TCCRAC 1 cut(s) 685
Mph1103I ATGCAT 1 cut(s) 1496
MroI TCCGGA 1 cut(s) 177
MroXI GAANNNNTTC 1 cut(s) 1314
MseI TTAA 4 cut(s) 80, 603, 780, 1017
MslI CAYNNNNRTG 2 cut(s) 442, 861
MspA1I CMGCKG 1 cut(s) 1533
MspI CCGG 3 cut(s) 72, 178, 639
MspR9I CCNGG 2 cut(s) 639, 653
MunI CAATTG 2 cut(s) 960, 1419
MvaI CCWGG 1 cut(s) 653
MvnI CGCG 1 cut(s) 1533
MwoI GCNNNNNNNGC 6 cut(s) 260, 498, 1031, 1285, 1459, 1622
NciI CCSGG 1 cut(s) 639
NdeI CATATG 1 cut(s) 862
NdeII GATC 7 cut(s) 205, 574, 592, 607, 1114, 1438, 1545
NlaIII CATG 8 cut(s) 88, 343, 581, 736, 904, 1025, 1402, 1567
NlaIV GGNNCC 5 cut(s) 432, 636, 759, 834, 1033
NmuCI GTSAC 1 cut(s) 65
NsiI ATGCAT 1 cut(s) 1496
PdmI GAANNNNTTC 1 cut(s) 1314
PfeI GAWTC 8 cut(s) 236, 302, 968, 1185, 1297, 1330, 1367, 1605
PkrI GCNGC 3 cut(s) 265, 529, 1624
PleI GAGTC 3 cut(s) 62, 166, 1159
PpsI GAGTC 3 cut(s) 62, 166, 1159
Psp6I CCWGG 1 cut(s) 651
PspGI CCWGG 1 cut(s) 651
PspN4I GGNNCC 5 cut(s) 432, 636, 759, 834, 1033
PspPI GGNCC 3 cut(s) 832, 992, 1535
PstI CTGCAG 2 cut(s) 529, 1375
PsuI RGATCY 1 cut(s) 1545
RsaI GTAC 2 cut(s) 539, 717
RsaNI GTAC 2 cut(s) 538, 716
RseI CAYNNNNRTG 2 cut(s) 442, 861
SacII CCGCGG 1 cut(s) 1534
SaqAI TTAA 4 cut(s) 80, 603, 780, 1017
SatI GCNGC 3 cut(s) 264, 528, 1623
Sau3AI GATC 7 cut(s) 205, 574, 592, 607, 1114, 1438, 1545
Sau96I GGNCC 3 cut(s) 832, 992, 1535
SchI GAGTC 3 cut(s) 62, 167, 1159
ScrFI CCNGG 2 cut(s) 639, 653
SduI GDGCHC 3 cut(s) 503, 1154, 1464
SfaNI GCATC 4 cut(s) 334, 651, 1228, 1266
SfcI CTRYAG 3 cut(s) 525, 1065, 1371
Sfr303I CCGCGG 1 cut(s) 1534
SgrBI CCGCGG 1 cut(s) 1534
SinI GGWCC 2 cut(s) 832, 1535
SmiMI CAYNNNNRTG 2 cut(s) 442, 861
SmlI CTYRAG 3 cut(s) 329, 1289, 1463
SmoI CTYRAG 3 cut(s) 329, 1289, 1463
SsiI CCGC 3 cut(s) 1531, 1533, 1616
SspMI CTAG 1 cut(s) 1353
StyD4I CCNGG 2 cut(s) 637, 651
TaaI ACNGT 8 cut(s) 65, 397, 586, 785, 1066, 1267, 1347, 1582
TaiI ACGT 1 cut(s) 1247
TaqI TCGA 4 cut(s) 60, 455, 497, 1158
TfiI GAWTC 8 cut(s) 236, 302, 968, 1185, 1297, 1330, 1367, 1605
Tru1I TTAA 4 cut(s) 80, 603, 780, 1017
Tru9I TTAA 4 cut(s) 80, 603, 780, 1017
TscAI CASTG 2 cut(s) 400, 1015
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 3 cut(s) 263, 527, 1622
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 3 cut(s) 258, 426, 1552
TspGWI ACGGA 2 cut(s) 132, 555
TspRI CASTG 2 cut(s) 400, 1015
VpaK11BI GGWCC 2 cut(s) 832, 1535
XapI RAATTY 6 cut(s) 292, 421, 614, 662, 1101, 1314
XmnI GAANNNNTTC 1 cut(s) 1314
XspI CTAG 1 cut(s) 1353
Zsp2I ATGCAT 1 cut(s) 1496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.