Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001862

Physical Location & Seq

Genomic Coordinates Reverse (-)

35534556 .. 35538713

Gene Structure 4158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG286000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGATTGATTGGTGTTTTATGCGATTTGGTAATCGGATTCTTCTGCGTGCAGATAACATGGAAGCCAAGCTTAGGTCTGTTACAGCGACGCTGTTTCTTTGTTTCCTCCTGTTTCCCTTGGTTTTTTCTGCATCCAATGATGGGTTGCTCCGGGTTGGACTGAAAAAGAGGAAGTTTGATCAAAACAACCGGGTTGCTGCTAACCTTTATTCCAAGAATGGGGATGCTGTGACAGCTGTTATCCGGAAATATAATCTTCGTGGAACTCTGGGAGATGATCAGGACATTGATATTGTATCGCTCAAGAATTACATGGACGCTCAGTACTTTGGGGAGATTGGTATCGGCACTCCCCCTCAGAAGTTCACTGTGATCTTTGATACTGGTAGCTCAAATTTGTGGGTGCCTTCTTCCAAGTGTTATTTCTCGATTGCATGCTATCTGCATCCAAAGTACAAGTCGAGCAGTTCAACCACCTACAGCAAAAATGGTAAACCTGCAGCAATCCAATATGGAACTGGTGCAATCTCTGGCTTCTTCAGTGAAGACCATGTTACAGTTGGTGACCTCGTGGTGAAAGATCAGGAATTTATTGAGGCAACCAAGGAGCCCGGCATCACATTCTTGGTAGCCAAATTTGATGGAATACTTGGCCTTGGATTTCAAGAAATTTCAGTTGGAAATGCTGTTCCTGTGTGGTATAACATGGTCAAGCAGGGTCTTCTTAAGGAACCTGTTTTCTCATTCTGGTTTAACCGCAATGCTGACGAAGAAGTAGGAGGTGAAATTGTTTTTGGTGGAGTGGATCCTGATCATTATGTCGGAGAGCACACATATGTTCCTGTTACACAGAAAGGCTATTGGCAGTTTGACATGGGTGATGTTTTGATTGATGGTCAAACAACTGGATTTTGTGCTGGAGGCTGTGCAGCGATTGCTGATTCTGGAACTTCTCTGTTGGTTGGCCCAACGACAATTATTACTGAACTCAACCATGCCATTGGAGCCACCGGGATTGTAAGTCAAGAATGCAAGACTGTAGTTGCAGAATATGGAGATACCATAATTAAGATGATTTTAGCAAAGGACCAACCACAGAAAATCTGCTCTCAGATTGGGTTATGCACATTTGATGGGACTCGCGGTGTAAGTGTTGGAATCAAGAGTGTTGTGGACGAGGACAATCACAAGTCATCTGCTGGCTTATCTGATGCAATGTGTTCTGCTTGTGAGATGACTGTTGTATGGATGCAAAATCAGCTCAAGCAGAATCAAACACAGGATCGCATACTTGACTATGTGAATCAGGTGAAGCAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

440

Amino Acids

48.26

Weight (kDa)

5.37

Isoelectric Point (pI)

29.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	108 - 341	5.7e-92	Eukaryotic aspartyl protease
TAXi_N	PF14543	109 - 161	3.2e-08	Xylanase inhibitor N-terminal
SapB_2	PF03489	342 - 375	1.8e-12	Saposin-like type B, region 2
SapB_1	PF05184	406 - 437	4.1e-10	Saposin-like type B, region 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11910 AT1G11910 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290
fragaria_vesca	FvH4_3g23140 FvH4_3g23140 FvH4_6g42880 FvH4_6g42880
malus_domestica	MD00G1159300.v1.1 MD09G1111100.v1.1 MD11G1213600.v1.1 MD15G1413400.v1.1 MD17G1098900.v1.1 MD17G1282600.v1.1 MD17G1282700.v1.1
prunus_persica	Prupe.3G214900_v2.0.a1 Prupe.3G214900_v2.0.a1 Prupe.4G217700_v2.0.a1
pyrus_communis	pycom03g14920 pycom09g03360 pycom11g18820 pycom17g09430
rosa_chinensis	RchiOBHm_Chr2g0158811 RchiOBHm_Chr5g0040781
rosa_laevigata	RLG00000021115 RLG00000034001
rosa_multiflora	Rmu_sc0001579.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039910 Rroxscaffold_2G00090980
rosa_rugosa	Rorug02G0472700 Rorug05G0187200 Rorug05G0187300
rosa_samantha	Rh2AG538500 Rh2BG551200 Rh2CG521800 Rh2DG561000 Rh5AG273000 Rh5BG278100 Rh5CG310100 Rh5DG286000
rosa_wichuraiana	Rw2G044570 Rw5G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	505
AccB1I	GGYRCC	1 cut(s)	403
AccII	CGCG	1 cut(s)	1143
AccIII	TCCGGA	1 cut(s)	243
AciI	CCGC	2 cut(s)	757, 1143
AclWI	GGATC	3 cut(s)	800, 813, 1290
AcsI	RAATTY	4 cut(s)	394, 587, 635, 669
AcuI	CTGAAG	1 cut(s)	523
AfaI	GTAC	2 cut(s)	326, 455
AfiI	CCNNNNNNNGG	3 cut(s)	72, 141, 219
AflII	CTTAAG	1 cut(s)	725
AgsI	TTSAA	2 cut(s)	471, 665
AjuI	GAANNNNNNNTTGG	6 cut(s)	407, 439, 660, 692, 777, 809
AloI	GAACNNNNNNTCC	2 cut(s)	672, 704
AluBI	AGCT	4 cut(s)	70, 236, 390, 1261
AluI	AGCT	4 cut(s)	70, 236, 390, 1261
Alw21I	GWGCWC	1 cut(s)	831
AlwI	GGATC	3 cut(s)	800, 813, 1290
Aor13HI	TCCGGA	1 cut(s)	243
AoxI	GGCC	2 cut(s)	652, 964
ApeKI	GCWGC	3 cut(s)	197, 500, 929
ApoI	RAATTY	4 cut(s)	394, 587, 635, 669
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AspS9I	GGNCC	2 cut(s)	965, 1087
AsuC2I	CCSGG	4 cut(s)	152, 191, 612, 1012
AsuHPI	GGTGA	5 cut(s)	575, 586, 794, 890, 1321
AvaII	GGWCC	1 cut(s)	1087
BamHI	GGATCC	1 cut(s)	805
BanI	GGYRCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	612
BauI	CACGAG	1 cut(s)	569
BbsI	GAAGAC	2 cut(s)	552, 713
Bbv12I	GWGCWC	1 cut(s)	831
BbvI	GCAGC	3 cut(s)	184, 512, 941
BccI	CCATC	4 cut(s)	134, 635, 887, 1127
BclI	TGATCA	3 cut(s)	178, 277, 811
BcnI	CCSGG	4 cut(s)	152, 191, 612, 1012
BfmI	CTRYAG	3 cut(s)	478, 498, 1038
BfrI	CTTAAG	1 cut(s)	725
BfuAI	ACCTGC	1 cut(s)	505
BisI	GCNGC	3 cut(s)	198, 501, 930
BlsI	GCNGC	3 cut(s)	199, 502, 931
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	4 cut(s)	152, 191, 612, 1012
Bme18I	GGWCC	1 cut(s)	1087
BmgT120I	GGNCC	2 cut(s)	965, 1087
BmiI	GGNNCC	5 cut(s)	405, 609, 732, 807, 1006
BmrFI	CCNGG	4 cut(s)	152, 191, 612, 1012
BmsI	GCATC	6 cut(s)	140, 214, 454, 624, 1201, 1239
BpiI	GAAGAC	2 cut(s)	552, 713
BpmI	CTGGAG	1 cut(s)	939
Bpu10I	CCTNAGC	1 cut(s)	71
BpuEI	CTTGAG	2 cut(s)	287, 1247
BpuMI	CCSGG	4 cut(s)	152, 191, 612, 1012
BsaBI	GATNNNNATC	2 cut(s)	341, 810
BsaJI	CCNNGG	3 cut(s)	117, 603, 655
BsaWI	WCCGGW	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	3 cut(s)	72, 141, 219
Bse1I	ACTGG	3 cut(s)	388, 523, 910
Bse3DI	GCAATG	2 cut(s)	766, 1221
Bse8I	GATNNNNATC	2 cut(s)	341, 810
BseAI	TCCGGA	1 cut(s)	243
BseDI	CCNNGG	3 cut(s)	117, 603, 655
BseGI	GGATG	4 cut(s)	131, 229, 445, 1254
BseJI	GATNNNNATC	2 cut(s)	341, 810
BseLI	CCNNNNNNNGG	3 cut(s)	72, 141, 219
BseMI	GCAATG	2 cut(s)	766, 1221
BseMII	CTCAG	3 cut(s)	335, 371, 1124
BseNI	ACTGG	3 cut(s)	388, 523, 910
BseXI	GCAGC	3 cut(s)	184, 512, 941
BsgI	GTGCAG	2 cut(s)	69, 948
Bsh1236I	CGCG	1 cut(s)	1143
BshFI	GGCC	2 cut(s)	654, 966
BshNI	GGYRCC	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	831
BsiSI	CCGG	5 cut(s)	151, 190, 244, 612, 1011
BslFI	GGGAC	1 cut(s)	1150
BslI	CCNNNNNNNGG	3 cut(s)	72, 141, 219
BsmFI	GGGAC	1 cut(s)	1150
BsmI	GAATGC	1 cut(s)	1034
BsnI	GGCC	2 cut(s)	654, 966
Bsp1286I	GDGCHC	2 cut(s)	612, 831
Bsp13I	TCCGGA	1 cut(s)	243
Bsp143I	GATC	7 cut(s)	178, 277, 372, 580, 805, 811, 1282
BspACI	CCGC	2 cut(s)	757, 1143
BspANI	GGCC	2 cut(s)	654, 966
BspCNI	CTCAG	3 cut(s)	334, 370, 1123
BspEI	TCCGGA	1 cut(s)	243
BspFNI	CGCG	1 cut(s)	1143
BspLI	GGNNCC	5 cut(s)	405, 609, 732, 807, 1006
BspMAI	CTGCAG	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	505
BspPI	GGATC	3 cut(s)	800, 813, 1290
BspT107I	GGYRCC	1 cut(s)	403
BspTI	CTTAAG	1 cut(s)	725
BsrDI	GCAATG	2 cut(s)	766, 1221
BsrI	ACTGG	3 cut(s)	388, 523, 910
BssECI	CCNNGG	3 cut(s)	117, 603, 655
BssMI	GATC	7 cut(s)	178, 277, 372, 580, 805, 811, 1282
BssSI	CACGAG	1 cut(s)	569
BssT1I	CCWWGG	3 cut(s)	117, 603, 655
Bst2BI	CACGAG	1 cut(s)	569
Bst4CI	ACNGT	4 cut(s)	370, 559, 1039, 1240
BstAFI	CTTAAG	1 cut(s)	725
BstAPI	GCANNNNNTGC	1 cut(s)	935
BstC8I	GCNNGC	3 cut(s)	48, 436, 1201
BstDEI	CTNAG	4 cut(s)	71, 321, 357, 1110
BstEII	GGTNACC	1 cut(s)	563
BstF5I	GGATG	4 cut(s)	131, 229, 445, 1254
BstFNI	CGCG	1 cut(s)	1143
BstKTI	GATC	7 cut(s)	181, 280, 375, 583, 808, 814, 1285
BstMBI	GATC	7 cut(s)	178, 277, 372, 580, 805, 811, 1282
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 935, 1004, 1258
BstNSI	RCATGY	1 cut(s)	438
BstPI	GGTNACC	1 cut(s)	563
BstSCI	CCNGG	4 cut(s)	150, 189, 610, 1010
BstSFI	CTRYAG	3 cut(s)	478, 498, 1038
BstUI	CGCG	1 cut(s)	1143
BstV1I	GCAGC	3 cut(s)	184, 512, 941
BstV2I	GAAGAC	2 cut(s)	552, 713
BstX2I	RGATCY	1 cut(s)	805
BstXI	CCANNNNNNTGG	1 cut(s)	1001
BstYI	RGATCY	1 cut(s)	805
BsuRI	GGCC	2 cut(s)	654, 966
BtsCI	GGATG	4 cut(s)	131, 229, 445, 1254
BtsIMutI	CAGTG	2 cut(s)	366, 547
BveI	ACCTGC	1 cut(s)	505
Cac8I	GCNNGC	3 cut(s)	48, 436, 1201
Cfr13I	GGNCC	2 cut(s)	965, 1087
CseI	GACGC	2 cut(s)	97, 326
Csp6I	GTAC	2 cut(s)	325, 454
CspCI	CAANNNNNGTGG	2 cut(s)	997, 1032
CviAII	CATG	7 cut(s)	58, 313, 435, 551, 706, 874, 995
CviQI	GTAC	2 cut(s)	325, 454
DdeI	CTNAG	4 cut(s)	71, 321, 357, 1110
DpnI	GATC	7 cut(s)	180, 279, 374, 582, 807, 813, 1284
DpnII	GATC	7 cut(s)	178, 277, 372, 580, 805, 811, 1282
Eco130I	CCWWGG	3 cut(s)	117, 603, 655
Eco24I	GRGCYC	1 cut(s)	612
Eco47I	GGWCC	1 cut(s)	1087
Eco57I	CTGAAG	1 cut(s)	523
Eco91I	GGTNACC	1 cut(s)	563
EcoO65I	GGTNACC	1 cut(s)	563
EcoT14I	CCWWGG	3 cut(s)	117, 603, 655
EcoT38I	GRGCYC	1 cut(s)	612
ErhI	CCWWGG	3 cut(s)	117, 603, 655
FaeI	CATG	7 cut(s)	61, 316, 438, 554, 709, 877, 998
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	1150
FatI	CATG	7 cut(s)	57, 312, 434, 550, 705, 873, 994
FauNDI	CATATG	1 cut(s)	835
FbaI	TGATCA	3 cut(s)	178, 277, 811
Fnu4HI	GCNGC	3 cut(s)	198, 501, 930
FokI	GGATG	4 cut(s)	118, 236, 432, 1261
FriOI	GRGCYC	1 cut(s)	612
Fsp4HI	GCNGC	3 cut(s)	198, 501, 930
GluI	GCNGC	3 cut(s)	198, 501, 930
GsuI	CTGGAG	1 cut(s)	939
HaeIII	GGCC	2 cut(s)	654, 966
HapII	CCGG	5 cut(s)	151, 190, 244, 612, 1011
HgaI	GACGC	2 cut(s)	97, 326
Hin1II	CATG	7 cut(s)	61, 316, 438, 554, 709, 877, 998
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	6 cut(s)	37, 941, 1138, 1158, 1270, 1303
HpaII	CCGG	5 cut(s)	151, 190, 244, 612, 1011
HphI	GGTGA	5 cut(s)	575, 586, 794, 890, 1321
Hpy166II	GTNNAC	3 cut(s)	366, 494, 1174
Hpy188I	TCNGA	5 cut(s)	36, 360, 824, 1113, 1210
Hpy8I	GTNNAC	3 cut(s)	366, 494, 1174
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	4 cut(s)	370, 559, 1039, 1240
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 935, 1004, 1258
HpyF3I	CTNAG	4 cut(s)	71, 321, 357, 1110
Hsp92II	CATG	7 cut(s)	61, 316, 438, 554, 709, 877, 998
Kpn2I	TCCGGA	1 cut(s)	243
Ksp22I	TGATCA	3 cut(s)	178, 277, 811
Kzo9I	GATC	7 cut(s)	178, 277, 372, 580, 805, 811, 1282
LmnI	GCTCC	3 cut(s)	153, 607, 1004
Lsp1109I	GCAGC	3 cut(s)	184, 512, 941
LweI	GCATC	6 cut(s)	140, 214, 454, 624, 1201, 1239
MaeIII	GTNAC	5 cut(s)	79, 229, 553, 563, 844
MalI	GATC	7 cut(s)	180, 279, 374, 582, 807, 813, 1284
MboI	GATC	7 cut(s)	178, 277, 372, 580, 805, 811, 1282
MboII	GAAGA	7 cut(s)	32, 248, 402, 529, 557, 713, 782
MflI	RGATCY	1 cut(s)	805
MhlI	GDGCHC	2 cut(s)	612, 831
MluCI	AATT	8 cut(s)	307, 394, 587, 635, 669, 786, 975, 1065
MlyI	GAGTC	1 cut(s)	1132
MmeI	TCCRAC	4 cut(s)	136, 658, 802, 1135
MnlI	CCTC	8 cut(s)	116, 162, 366, 578, 589, 773, 914, 1171
MroI	TCCGGA	1 cut(s)	243
MseI	TTAA	3 cut(s)	726, 753, 1068
MslI	CAYNNNNRTG	1 cut(s)	834
MspA1I	CMGCKG	1 cut(s)	236
MspCI	CTTAAG	1 cut(s)	725
MspI	CCGG	5 cut(s)	151, 190, 244, 612, 1011
MspR9I	CCNGG	4 cut(s)	152, 191, 612, 1012
Mva1269I	GAATGC	1 cut(s)	1034
MvnI	CGCG	1 cut(s)	1143
MwoI	GCNNNNNNNGC	4 cut(s)	233, 935, 1004, 1258
NciI	CCSGG	4 cut(s)	152, 191, 612, 1012
NdeI	CATATG	1 cut(s)	835
NdeII	GATC	7 cut(s)	178, 277, 372, 580, 805, 811, 1282
NlaIII	CATG	7 cut(s)	61, 316, 438, 554, 709, 877, 998
NlaIV	GGNNCC	5 cut(s)	405, 609, 732, 807, 1006
NmuCI	GTSAC	2 cut(s)	229, 563
NspI	RCATGY	1 cut(s)	438
PaeI	GCATGC	1 cut(s)	438
PctI	GAATGC	1 cut(s)	1034
PfeI	GAWTC	5 cut(s)	37, 941, 1158, 1270, 1303
PkrI	GCNGC	3 cut(s)	199, 502, 931
PleI	GAGTC	1 cut(s)	1132
PpsI	GAGTC	1 cut(s)	1132
PspEI	GGTNACC	1 cut(s)	563
PspN4I	GGNNCC	5 cut(s)	405, 609, 732, 807, 1006
PspPI	GGNCC	2 cut(s)	965, 1087
PstI	CTGCAG	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	805
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	326, 455
RsaNI	GTAC	2 cut(s)	325, 454
RseI	CAYNNNNRTG	1 cut(s)	834
SaqAI	TTAA	3 cut(s)	726, 753, 1068
SatI	GCNGC	3 cut(s)	198, 501, 930
Sau3AI	GATC	7 cut(s)	178, 277, 372, 580, 805, 811, 1282
Sau96I	GGNCC	2 cut(s)	965, 1087
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	1 cut(s)	1132
ScrFI	CCNGG	4 cut(s)	152, 191, 612, 1012
SduI	GDGCHC	2 cut(s)	612, 831
SfaNI	GCATC	6 cut(s)	140, 214, 454, 624, 1201, 1239
SfcI	CTRYAG	3 cut(s)	478, 498, 1038
SinI	GGWCC	1 cut(s)	1087
SmiMI	CAYNNNNRTG	1 cut(s)	834
SmlI	CTYRAG	3 cut(s)	302, 725, 1262
SmoI	CTYRAG	3 cut(s)	302, 725, 1262
SphI	GCATGC	1 cut(s)	438
Sse9I	AATT	8 cut(s)	307, 394, 587, 635, 669, 786, 975, 1065
SsiI	CCGC	2 cut(s)	757, 1143
StyD4I	CCNGG	4 cut(s)	150, 189, 610, 1010
StyI	CCWWGG	3 cut(s)	117, 603, 655
TaaI	ACNGT	4 cut(s)	370, 559, 1039, 1240
TaqI	TCGA	2 cut(s)	428, 461
TasI	AATT	8 cut(s)	307, 394, 587, 635, 669, 786, 975, 1065
TatI	WGTACW	2 cut(s)	324, 453
TfiI	GAWTC	5 cut(s)	37, 941, 1158, 1270, 1303
Tru1I	TTAA	3 cut(s)	726, 753, 1068
Tru9I	TTAA	3 cut(s)	726, 753, 1068
TscAI	CASTG	2 cut(s)	373, 547
TseFI	GTSAC	2 cut(s)	229, 563
TseI	GCWGC	3 cut(s)	197, 500, 929
Tsp45I	GTSAC	2 cut(s)	229, 563
TspRI	CASTG	2 cut(s)	373, 547
Vha464I	CTTAAG	1 cut(s)	725
VpaK11BI	GGWCC	1 cut(s)	1087
XapI	RAATTY	4 cut(s)	394, 587, 635, 669
XceI	RCATGY	1 cut(s)	438
XcmI	CCANNNNNNNNNTGG	2 cut(s)	515, 557
ZrmI	AGTACT	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.