Rh5CG310100

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Reverse (-)
34243500 .. 34247393
3894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG310100.1

Sequence Viewer

Length: 1602 bp
ATGATTGATTGGTGTTTTACGCAATTTGGTAATCGGATTCTTCTGCGTGCAGATAACATGGAAGCCAAGCTTAAGTCTGTTACAGCGACGCTGTTTCTTTGTTTCCTCCTGTTTCCCTTGGTTTTTTCTGCATCCAATGATGGGTTGCTCCGGGTTGGACTGAAAAAGAGGAAGTTTGATCAGAATAACCGGGTTGCTGCTAACCTTCAATCCAAGAATGGGGATGCTGTGAGAGCTGTTATCCGGAAATATAATCTTCGTGGAACTCTGGGAGATGATCAGGACATTGATATTGTATCTCTCAATAATTACATGGACGCTCAGTACTTTGGGGAGATTGGTATTGGTACTCCCCCTCAGAAGTTCACTGTGATCTTTGATACTGGTAGCTCGAATCTGTGGGTGCCTTCTTCCAAGTGTTATTTCTCGCTTGCATGCTATCTGCATCCAAAGTACAAGTCGAGCAGTTCAACCACCTACAGCAAAAATGGTAAACCTGCAGCAATCCAATATGGAACTGGTGCAATCTCTGGCTTCTTCAGTGAAGACCATGTTACAGTTGGTGACCTCGTGGTGAAAGATCAGGAATTTATTGAGGCAACCAAGGAGCCCGGCATCACATTCTTGGTAGCCAAATTTGATGGAATACTTGGCCTTGGATTTCAAGAAATTTCAGTTGGAAATGCTGTTCCTGTGTGGTATAACATGGTCAAGCAGGGTCTTCTTAAGGAACCTGTTTTCTCATTCTGGTTTAACCGCAATGCTGATGAAGAAGTAGGAGGTGAAATTGTTTTTGGTGGAGTGGATCCTGATCATTATGTCGGAGAGCACACATATGTTCCTGTTACACAGAAAGGCTATTGGCAGTTTGACATGGGTGATGTTTTGATTGATGGTCAAACAACTGGATTTTGTGCCGGAGGCTGTTCAGCGATTGCTGATTCTGGAACTTCTCTGTTGGTTGGCCCAACGACAATTATTACTGAACTCAACCATGCCATTGGAGCCACCGGGATCGTAAGTCAAGAATGCAAGACTGTGGTTGCAGAATATGGAGATACCATAATTAAGATGATTTTAGCAAAGGACCAACCACAGAAAATCTGCTCTCAGATTGGGTTATGCACATTTGATGGGACTCGCGGTGTAAGTGTTGGAATCAAGAGTGTTGTGGATGAGGACAATCACAAGTCATCTGCTGGCTTATCTGATGCAATGTGTTCTGCTTGTGAGATGACTGTTGTATGGATGCAAAATCAGCTCAAGCAGAATCAAACACAGGATCACATACTTGACTATGTGAATCAGCTCTGTGATCGGCTGCCTAGCCCAATGGGAGAATCTGCTGTTGATTGTGCCGGTTTGTCTTCCATGCCTAATGTGTCCTTCACAATTGGTGGAAAACAATTTGATCTAGCCCCTGAGCAGTACGTGCTCAAAGTAGGCGAGGGAGAGGTAGCACAATGCATCAGTGGATTTACTGCTTTGGATGTCCCACCTCCTCGTGGACCACTCTGGATTCTGGGAGATGTGTTCATGGGTCAGTTCCACACTGTGTTTGACTACGGCAATGAGAGAATTGGATTTGCAGAAGCTGCATAG

Protein Analysis

533

Amino Acids

58.02

Weight (kDa)

4.9

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 108 - 532 1.6e-117 Eukaryotic aspartyl protease
TAXi_N PF14543 109 - 266 1.6e-10 Xylanase inhibitor N-terminal
SapB_2 PF03489 342 - 375 2.3e-12 Saposin-like type B, region 2
SapB_1 PF05184 406 - 442 1.1e-13 Saposin-like type B, region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 505
AccB1I GGYRCC 1 cut(s) 403
AccII CGCG 1 cut(s) 1143
AccIII TCCGGA 1 cut(s) 243
AciI CCGC 2 cut(s) 757, 1143
AclWI GGATC 4 cut(s) 800, 813, 1022, 1290
AcsI RAATTY 3 cut(s) 587, 635, 669
AcuI CTGAAG 1 cut(s) 523
AdeI CACNNNGTG 1 cut(s) 1555
AfaI GTAC 4 cut(s) 326, 349, 455, 1430
AfiI CCNNNNNNNGG 3 cut(s) 141, 219, 1505
AflII CTTAAG 2 cut(s) 71, 725
AgsI TTSAA 3 cut(s) 209, 471, 665
AjuI GAANNNNNNNTTGG 6 cut(s) 407, 439, 660, 692, 777, 809
AloI GAACNNNNNNTCC 2 cut(s) 672, 704
AluBI AGCT 6 cut(s) 70, 236, 390, 1261, 1309, 1595
AluI AGCT 6 cut(s) 70, 236, 390, 1261, 1309, 1595
Alw21I GWGCWC 2 cut(s) 831, 1437
AlwI GGATC 4 cut(s) 800, 813, 1022, 1290
AlwNI CAGNNNCTG 1 cut(s) 1595
Aor13HI TCCGGA 1 cut(s) 243
AoxI GGCC 2 cut(s) 652, 964
ApeKI GCWGC 4 cut(s) 197, 500, 1321, 1595
ApoI RAATTY 3 cut(s) 587, 635, 669
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
AspS9I GGNCC 3 cut(s) 965, 1087, 1508
AsuC2I CCSGG 4 cut(s) 152, 191, 612, 1012
AsuHPI GGTGA 4 cut(s) 575, 586, 794, 890
AvaII GGWCC 2 cut(s) 1087, 1508
BamHI GGATCC 1 cut(s) 805
BanI GGYRCC 1 cut(s) 403
BanII GRGCYC 1 cut(s) 612
BauI CACGAG 2 cut(s) 569, 1503
BbsI GAAGAC 3 cut(s) 552, 713, 1359
Bbv12I GWGCWC 2 cut(s) 831, 1437
BbvI GCAGC 4 cut(s) 184, 512, 1308, 1582
BccI CCATC 4 cut(s) 134, 635, 887, 1127
BceAI ACGGC 1 cut(s) 1582
BclI TGATCA 3 cut(s) 178, 277, 811
BcnI CCSGG 4 cut(s) 152, 191, 612, 1012
BfaI CTAG 2 cut(s) 1326, 1415
BfmI CTRYAG 2 cut(s) 478, 498
BfrI CTTAAG 2 cut(s) 71, 725
BfuAI ACCTGC 1 cut(s) 505
BisI GCNGC 4 cut(s) 198, 501, 1322, 1596
BlsI GCNGC 4 cut(s) 199, 502, 1323, 1597
BmcAI AGTACT 1 cut(s) 326
Bme1390I CCNGG 4 cut(s) 152, 191, 612, 1012
Bme18I GGWCC 2 cut(s) 1087, 1508
BmgT120I GGNCC 3 cut(s) 965, 1087, 1508
BmiI GGNNCC 5 cut(s) 405, 609, 732, 807, 1006
BmrFI CCNGG 4 cut(s) 152, 191, 612, 1012
BmsI GCATC 7 cut(s) 140, 214, 454, 624, 1201, 1239, 1476
BpiI GAAGAC 3 cut(s) 552, 713, 1359
Bpu10I CCTNAGC 1 cut(s) 1422
BpuEI CTTGAG 1 cut(s) 1247
BpuMI CCSGG 4 cut(s) 152, 191, 612, 1012
BsaAI YACGTR 1 cut(s) 1432
BsaBI GATNNNNATC 1 cut(s) 810
BsaJI CCNNGG 3 cut(s) 117, 603, 655
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 3 cut(s) 141, 219, 1505
Bse118I RCCGGY 1 cut(s) 1358
Bse1I ACTGG 3 cut(s) 388, 523, 910
Bse3DI GCAATG 3 cut(s) 766, 1221, 1576
Bse8I GATNNNNATC 1 cut(s) 810
BseAI TCCGGA 1 cut(s) 243
BseDI CCNNGG 3 cut(s) 117, 603, 655
BseGI GGATG 6 cut(s) 131, 229, 445, 1180, 1254, 1495
BseJI GATNNNNATC 1 cut(s) 810
BseLI CCNNNNNNNGG 3 cut(s) 141, 219, 1505
BseMI GCAATG 3 cut(s) 766, 1221, 1576
BseMII CTCAG 4 cut(s) 335, 371, 1124, 1413
BseNI ACTGG 3 cut(s) 388, 523, 910
BseRI GAGGAG 1 cut(s) 1491
BseXI GCAGC 4 cut(s) 184, 512, 1308, 1582
BsgI GTGCAG 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 1143
BshFI GGCC 2 cut(s) 654, 966
BshNI GGYRCC 1 cut(s) 403
BsiHKAI GWGCWC 2 cut(s) 831, 1437
BsiSI CCGG 7 cut(s) 151, 190, 244, 612, 918, 1011, 1359
BslFI GGGAC 2 cut(s) 1150, 1478
BslI CCNNNNNNNGG 3 cut(s) 141, 219, 1505
BsmFI GGGAC 2 cut(s) 1150, 1478
BsmI GAATGC 1 cut(s) 1034
BsnI GGCC 2 cut(s) 654, 966
Bsp1286I GDGCHC 3 cut(s) 612, 831, 1437
Bsp13I TCCGGA 1 cut(s) 243
BspACI CCGC 2 cut(s) 757, 1143
BspANI GGCC 2 cut(s) 654, 966
BspCNI CTCAG 4 cut(s) 334, 370, 1123, 1414
BspEI TCCGGA 1 cut(s) 243
BspFNI CGCG 1 cut(s) 1143
BspLI GGNNCC 5 cut(s) 405, 609, 732, 807, 1006
BspMAI CTGCAG 1 cut(s) 502
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 4 cut(s) 800, 813, 1022, 1290
BspT107I GGYRCC 1 cut(s) 403
BspTI CTTAAG 2 cut(s) 71, 725
BsrDI GCAATG 3 cut(s) 766, 1221, 1576
BsrFI RCCGGY 1 cut(s) 1358
BsrI ACTGG 3 cut(s) 388, 523, 910
BssAI RCCGGY 1 cut(s) 1358
BssECI CCNNGG 3 cut(s) 117, 603, 655
BssSI CACGAG 2 cut(s) 569, 1503
BssT1I CCWWGG 3 cut(s) 117, 603, 655
Bst2BI CACGAG 2 cut(s) 569, 1503
Bst4CI ACNGT 5 cut(s) 370, 559, 1039, 1240, 1555
BstAFI CTTAAG 2 cut(s) 71, 725
BstAPI GCANNNNNTGC 2 cut(s) 1432, 1595
BstBAI YACGTR 1 cut(s) 1432
BstC8I GCNNGC 4 cut(s) 48, 432, 436, 1201
BstDEI CTNAG 4 cut(s) 321, 357, 1110, 1422
BstEII GGTNACC 1 cut(s) 563
BstF5I GGATG 6 cut(s) 131, 229, 445, 1180, 1254, 1495
BstFNI CGCG 1 cut(s) 1143
BstMWI GCNNNNNNNGC 5 cut(s) 233, 1004, 1258, 1432, 1595
BstNSI RCATGY 1 cut(s) 438
BstPI GGTNACC 1 cut(s) 563
BstSCI CCNGG 4 cut(s) 150, 189, 610, 1010
BstSFI CTRYAG 2 cut(s) 478, 498
BstUI CGCG 1 cut(s) 1143
BstV1I GCAGC 4 cut(s) 184, 512, 1308, 1582
BstV2I GAAGAC 3 cut(s) 552, 713, 1359
BstX2I RGATCY 1 cut(s) 805
BstXI CCANNNNNNTGG 1 cut(s) 1001
BstYI RGATCY 1 cut(s) 805
BsuRI GGCC 2 cut(s) 654, 966
BtsCI GGATG 6 cut(s) 131, 229, 445, 1180, 1254, 1495
BtsIMutI CAGTG 4 cut(s) 366, 547, 1477, 1551
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 4 cut(s) 48, 432, 436, 1201
CaiI CAGNNNCTG 1 cut(s) 1595
Cfr10I RCCGGY 1 cut(s) 1358
Cfr13I GGNCC 3 cut(s) 965, 1087, 1508
CseI GACGC 2 cut(s) 97, 326
Csp6I GTAC 4 cut(s) 325, 348, 454, 1429
CviAII CATG 9 cut(s) 58, 313, 435, 551, 706, 874, 995, 1372, 1537
CviQI GTAC 4 cut(s) 325, 348, 454, 1429
DdeI CTNAG 4 cut(s) 321, 357, 1110, 1422
DraIII CACNNNGTG 1 cut(s) 1555
Eco130I CCWWGG 3 cut(s) 117, 603, 655
Eco24I GRGCYC 1 cut(s) 612
Eco47I GGWCC 2 cut(s) 1087, 1508
Eco57I CTGAAG 1 cut(s) 523
Eco91I GGTNACC 1 cut(s) 563
EcoO65I GGTNACC 1 cut(s) 563
EcoT14I CCWWGG 3 cut(s) 117, 603, 655
EcoT22I ATGCAT 1 cut(s) 1469
EcoT38I GRGCYC 1 cut(s) 612
ErhI CCWWGG 3 cut(s) 117, 603, 655
FaeI CATG 9 cut(s) 61, 316, 438, 554, 709, 877, 998, 1375, 1540
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 2 cut(s) 1150, 1478
FatI CATG 9 cut(s) 57, 312, 434, 550, 705, 873, 994, 1371, 1536
FauNDI CATATG 1 cut(s) 835
FbaI TGATCA 3 cut(s) 178, 277, 811
Fnu4HI GCNGC 4 cut(s) 198, 501, 1322, 1596
FokI GGATG 6 cut(s) 118, 236, 432, 1187, 1261, 1502
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 4 cut(s) 198, 501, 1322, 1596
FspBI CTAG 2 cut(s) 1326, 1415
GluI GCNGC 4 cut(s) 198, 501, 1322, 1596
HaeIII GGCC 2 cut(s) 654, 966
HapII CCGG 7 cut(s) 151, 190, 244, 612, 918, 1011, 1359
HgaI GACGC 2 cut(s) 97, 326
Hin1II CATG 9 cut(s) 61, 316, 438, 554, 709, 877, 998, 1375, 1540
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 9 cut(s) 37, 394, 941, 1138, 1158, 1270, 1303, 1340, 1519
HpaII CCGG 7 cut(s) 151, 190, 244, 612, 918, 1011, 1359
HphI GGTGA 4 cut(s) 575, 586, 794, 890
Hpy166II GTNNAC 3 cut(s) 366, 494, 1508
Hpy188I TCNGA 6 cut(s) 36, 183, 360, 824, 1113, 1210
Hpy188III TCNNGA 9 cut(s) 244, 281, 584, 665, 809, 945, 1025, 1162, 1516
Hpy8I GTNNAC 3 cut(s) 366, 494, 1508
Hpy99I CGWCG 1 cut(s) 91
HpyAV CCTTC 3 cut(s) 215, 417, 1396
HpyCH4III ACNGT 5 cut(s) 370, 559, 1039, 1240, 1555
HpyCH4IV ACGT 1 cut(s) 1431
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 1004, 1258, 1432, 1595
HpyF3I CTNAG 4 cut(s) 321, 357, 1110, 1422
HpySE526I ACGT 1 cut(s) 1431
Hsp92II CATG 9 cut(s) 61, 316, 438, 554, 709, 877, 998, 1375, 1540
Kpn2I TCCGGA 1 cut(s) 243
Ksp22I TGATCA 3 cut(s) 178, 277, 811
LmnI GCTCC 3 cut(s) 153, 607, 1004
Lsp1109I GCAGC 4 cut(s) 184, 512, 1308, 1582
LweI GCATC 7 cut(s) 140, 214, 454, 624, 1201, 1239, 1476
MaeI CTAG 2 cut(s) 1326, 1415
MaeII ACGT 1 cut(s) 1431
MaeIII GTNAC 4 cut(s) 79, 553, 563, 844
MboII GAAGA 8 cut(s) 32, 248, 402, 529, 557, 713, 782, 1359
MfeI CAATTG 1 cut(s) 1392
MflI RGATCY 1 cut(s) 805
MhlI GDGCHC 3 cut(s) 612, 831, 1437
MlyI GAGTC 1 cut(s) 1132
MmeI TCCRAC 4 cut(s) 136, 658, 802, 1135
Mph1103I ATGCAT 1 cut(s) 1469
MroI TCCGGA 1 cut(s) 243
MseI TTAA 4 cut(s) 72, 726, 753, 1068
MslI CAYNNNNRTG 1 cut(s) 834
MspCI CTTAAG 2 cut(s) 71, 725
MspI CCGG 7 cut(s) 151, 190, 244, 612, 918, 1011, 1359
MspR9I CCNGG 4 cut(s) 152, 191, 612, 1012
MunI CAATTG 1 cut(s) 1392
Mva1269I GAATGC 1 cut(s) 1034
MvnI CGCG 1 cut(s) 1143
MwoI GCNNNNNNNGC 5 cut(s) 233, 1004, 1258, 1432, 1595
NciI CCSGG 4 cut(s) 152, 191, 612, 1012
NdeI CATATG 1 cut(s) 835
NlaIII CATG 9 cut(s) 61, 316, 438, 554, 709, 877, 998, 1375, 1540
NlaIV GGNNCC 5 cut(s) 405, 609, 732, 807, 1006
NmuCI GTSAC 1 cut(s) 563
NsiI ATGCAT 1 cut(s) 1469
NspI RCATGY 1 cut(s) 438
PaeI GCATGC 1 cut(s) 438
PctI GAATGC 1 cut(s) 1034
PfeI GAWTC 8 cut(s) 37, 394, 941, 1158, 1270, 1303, 1340, 1519
PkrI GCNGC 4 cut(s) 199, 502, 1323, 1597
PleI GAGTC 1 cut(s) 1132
PpsI GAGTC 1 cut(s) 1132
Ppu21I YACGTR 1 cut(s) 1432
PspEI GGTNACC 1 cut(s) 563
PspN4I GGNNCC 5 cut(s) 405, 609, 732, 807, 1006
PspPI GGNCC 3 cut(s) 965, 1087, 1508
PstI CTGCAG 1 cut(s) 502
PstNI CAGNNNCTG 1 cut(s) 1595
PsuI RGATCY 1 cut(s) 805
RsaI GTAC 4 cut(s) 326, 349, 455, 1430
RsaNI GTAC 4 cut(s) 325, 348, 454, 1429
RseI CAYNNNNRTG 1 cut(s) 834
SaqAI TTAA 4 cut(s) 72, 726, 753, 1068
SatI GCNGC 4 cut(s) 198, 501, 1322, 1596
Sau96I GGNCC 3 cut(s) 965, 1087, 1508
ScaI AGTACT 1 cut(s) 326
SchI GAGTC 1 cut(s) 1132
ScrFI CCNGG 4 cut(s) 152, 191, 612, 1012
SduI GDGCHC 3 cut(s) 612, 831, 1437
SfaNI GCATC 7 cut(s) 140, 214, 454, 624, 1201, 1239, 1476
SfcI CTRYAG 2 cut(s) 478, 498
SinI GGWCC 2 cut(s) 1087, 1508
SmiMI CAYNNNNRTG 1 cut(s) 834
SmlI CTYRAG 3 cut(s) 71, 725, 1262
SmoI CTYRAG 3 cut(s) 71, 725, 1262
SphI GCATGC 1 cut(s) 438
SsiI CCGC 2 cut(s) 757, 1143
SspMI CTAG 2 cut(s) 1326, 1415
StyD4I CCNGG 4 cut(s) 150, 189, 610, 1010
StyI CCWWGG 3 cut(s) 117, 603, 655
TaaI ACNGT 5 cut(s) 370, 559, 1039, 1240, 1555
TaiI ACGT 1 cut(s) 1434
TaqI TCGA 2 cut(s) 392, 461
TatI WGTACW 2 cut(s) 324, 453
TfiI GAWTC 8 cut(s) 37, 394, 941, 1158, 1270, 1303, 1340, 1519
Tru1I TTAA 4 cut(s) 72, 726, 753, 1068
Tru9I TTAA 4 cut(s) 72, 726, 753, 1068
TscAI CASTG 4 cut(s) 373, 547, 1477, 1558
TseFI GTSAC 1 cut(s) 563
TseI GCWGC 4 cut(s) 197, 500, 1321, 1595
Tsp45I GTSAC 1 cut(s) 563
TspDTI ATGAA 2 cut(s) 783, 1525
TspRI CASTG 4 cut(s) 373, 547, 1477, 1558
Vha464I CTTAAG 2 cut(s) 71, 725
VpaK11BI GGWCC 2 cut(s) 1087, 1508
XapI RAATTY 3 cut(s) 587, 635, 669
XceI RCATGY 1 cut(s) 438
XcmI CCANNNNNNNNNTGG 2 cut(s) 515, 557
XspI CTAG 2 cut(s) 1326, 1415
ZrmI AGTACT 1 cut(s) 326
Zsp2I ATGCAT 1 cut(s) 1469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.