MD09G1111100.v1.1

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
8259333 .. 8263751
4419 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1111100.v1.1.491

Sequence Viewer

Length: 1425 bp
ATGAAAATAGATAAAACTTGTCATCTGAGTAGAAGAAGTAATGGAACGCCGGGAGGTACGATTAGGAAGTATCATTTACGCAGTAATCTTGGGGAGTCTGAGGACACTGATATCGTTGCGTTAAAGAACTATATGGATGCTCAGTATTTTGGTGAGATTGGTATTGGAACTCCTGCTCAGAAGTTCACTGTGATATTTGACACCGGAAGTTCTAATCTTTGGGTGCCCTCAGCAAAGTGTTATTTCTCGATTGCTTGCTATTTACATCCCAAGTATAAGTCTAGCCAGTCAAGTACATACACTAAGAATGGCAAATCTGCGGCAATCCAGTATGGCACTGGTGCAATTTCAGGTTTCTTCAGCCAGGACCATGTCCAAGTTGGCGATCTTGTTGTCCAGGATCAGGACTTTATTGAGGCAACCAAAGAGCCTGGCATCACGTTCGTGGCTGCTAAGTTTGATGGTATTCTTGGACTTGGTTTCCAAGAGATTTCAGTTGGAGATGCTGTTCCTGTCTGGTATAATTTGGTCAATCAAGGTCTTGTTAAAGAACCAGTTTTCTCATTTTGGTTAAATCGCAATACTGAAGGGGAAGAAGGGGGTGAGATTGTCTTTGGTGGGGTTGATTCTAGTCATTTCAAGGGTGAGCATACATATGTTCCCGTGACTCAAAAAGGCTACTGGCAGTTTGATATGGGTGATGTCTTAATTGGTGGTGAATCATCTGGATATTGTGCAAGTGGTTGTTCAGCAATTGCGGATTCAGGAACCTCCCTATTGGCTGGGCCAACGACTGTTATAACTCAAATCAATCATGCCATCGGAGCCTCTGGTGTTGTAAGCCAGGAATGTAAGATAGTGGTTGAACAGTATGGGAAAACCATTATAGAAATGTTGGTAGCCAAGGCACAACCCCAAAAGATCTGCTCTCAAATTGGTTTCTGTACTTTTGACGGAACTCGTGGTGTGAGCACGGGGATTGAAAGTATGGTGGATCAGAAACAAGAAAAGAAATCTGATGGCGTGCATGATGCTACATGTGTTGCTTGTGAGATGGCAGTGGTGTGGATGCAGAATAAGCTAAGGAAAAATCAGACAGAGGAGCAGATCTTGGATTATGTCAACCAGCTCTGTGAACGACTTCCCAGTCCCAGTGGAGAATCAGTTGTAGAGTGTGATGCTCTATCTTCATTGCCCAGTGTCTCATTTACCATTGGTGGTAAAGTATTTGACCTTGCTCCAGAACAGTACGTTCTCAAAGTTGGGGAGGGAGTCGCAGCTCAATGCATCAGCGGATTCATAGCTTTAGACGTCGCACCTCCTCGTGGACCACTGTGGATTTTGGGAGACGTTTTCATGGGTCGGTATCACACCGTGTTCGACTACGGAAACTTGTCAGTTGGATTTGCAGAAGCAGCAGCTTAA

Protein Analysis

475

Amino Acids

51.11

Weight (kDa)

5.04

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 48 - 472 4.2e-118 Eukaryotic aspartyl protease
TAXi_N PF14543 49 - 101 1.2e-07 Xylanase inhibitor N-terminal
SapB_2 PF03489 282 - 315 2.1e-12 Saposin-like type B, region 2
SapB_1 PF05184 346 - 382 1.2e-13 Saposin-like type B, region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 800
AasI GACNNNNNNGTC 1 cut(s) 1146
AatII GACGTC 1 cut(s) 1314
AccB1I GGYRCC 1 cut(s) 223
AciI CCGC 3 cut(s) 320, 758, 1293
AclWI GGATC 2 cut(s) 408, 1002
AcuI CTGAAG 2 cut(s) 343, 606
AcyI GRCGYC 1 cut(s) 1311
AdeI CACNNNGTG 1 cut(s) 1375
AfaI GTAC 4 cut(s) 58, 295, 946, 1250
AfiI CCNNNNNNNGG 2 cut(s) 403, 1325
AflIII ACRYGT 1 cut(s) 1037
AgsI TTSAA 3 cut(s) 640, 866, 983
AjnI CCWGG 4 cut(s) 363, 396, 430, 843
AleI CACNNNNGTG 1 cut(s) 443
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
AluBI AGCT 5 cut(s) 1081, 1129, 1280, 1304, 1421
AluI AGCT 5 cut(s) 1081, 1129, 1280, 1304, 1421
Alw21I GWGCWC 1 cut(s) 974
Alw26I GTCTC 2 cut(s) 1207, 1341
AlwI GGATC 2 cut(s) 408, 1002
AoxI GGCC 1 cut(s) 785
ApeKI GCWGC 4 cut(s) 449, 1277, 1415, 1418
Asp700I GAANNNNTTC 1 cut(s) 1140
AspS9I GGNCC 3 cut(s) 367, 785, 1328
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 5 cut(s) 164, 614, 656, 710, 728
AvaII GGWCC 2 cut(s) 367, 1328
BaeGI GKGCMC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 223
BauI CACGAG 2 cut(s) 960, 1323
Bbv12I GWGCWC 1 cut(s) 974
BbvCI CCTCAGC 1 cut(s) 229
BbvI GCAGC 2 cut(s) 436, 1289
BccI CCATC 4 cut(s) 455, 827, 1013, 1048
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BciT130I CCWGG 4 cut(s) 365, 398, 432, 845
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 2 cut(s) 1207, 1341
BfaI CTAG 2 cut(s) 282, 630
BglII AGATCT 2 cut(s) 921, 1107
BisI GCNGC 5 cut(s) 321, 450, 1278, 1416, 1419
BlsI GCNGC 5 cut(s) 322, 451, 1279, 1417, 1420
Bme1390I CCNGG 5 cut(s) 51, 365, 398, 432, 845
Bme18I GGWCC 2 cut(s) 367, 1328
BmgT120I GGNCC 3 cut(s) 367, 785, 1328
BmiI GGNNCC 3 cut(s) 225, 769, 826
BmrFI CCNGG 5 cut(s) 51, 365, 398, 432, 845
BmrI ACTGGG 3 cut(s) 1140, 1146, 1191
BmsI GCATC 7 cut(s) 127, 444, 493, 1021, 1059, 1168, 1296
BmuI ACTGGG 3 cut(s) 1140, 1146, 1191
BpmI CTGGAG 1 cut(s) 1224
Bpu10I CCTNAGC 2 cut(s) 229, 1082
BpuMI CCSGG 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 1311
BsaJI CCNNGG 1 cut(s) 903
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 4 cut(s) 492, 522, 1149, 1179
Bsc4I CCNNNNNNNGG 2 cut(s) 403, 1325
Bse1I ACTGG 8 cut(s) 286, 328, 343, 554, 686, 1146, 1152, 1197
Bse3DI GCAATG 1 cut(s) 1190
BseBI CCWGG 4 cut(s) 365, 398, 432, 845
BseDI CCNNGG 1 cut(s) 903
BseGI GGATG 3 cut(s) 142, 265, 1074
BseLI CCNNNNNNNGG 2 cut(s) 403, 1325
BseMI GCAATG 1 cut(s) 1190
BseMII CTCAG 5 cut(s) 17, 90, 155, 191, 243
BseNI ACTGG 8 cut(s) 286, 328, 343, 554, 686, 1146, 1152, 1197
BseRI GAGGAG 2 cut(s) 1115, 1311
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 2 cut(s) 436, 1289
BseYI CCCAGC 1 cut(s) 782
BshFI GGCC 1 cut(s) 787
BshNI GGYRCC 1 cut(s) 223
BsiHKAI GWGCWC 1 cut(s) 974
BsiSI CCGG 2 cut(s) 50, 204
BslFI GGGAC 1 cut(s) 1134
BslI CCNNNNNNNGG 2 cut(s) 403, 1325
BsmAI GTCTC 2 cut(s) 1207, 1341
BsmBI CGTCTC 1 cut(s) 1341
BsmFI GGGAC 1 cut(s) 1134
BsnI GGCC 1 cut(s) 787
Bsp1286I GDGCHC 2 cut(s) 228, 974
Bsp143I GATC 5 cut(s) 385, 400, 921, 994, 1107
BspACI CCGC 3 cut(s) 320, 758, 1293
BspANI GGCC 1 cut(s) 787
BspCNI CTCAG 5 cut(s) 18, 91, 154, 190, 242
BspLI GGNNCC 3 cut(s) 225, 769, 826
BspPI GGATC 2 cut(s) 408, 1002
BspT107I GGYRCC 1 cut(s) 223
BsrDI GCAATG 1 cut(s) 1190
BsrI ACTGG 8 cut(s) 286, 328, 343, 554, 686, 1146, 1152, 1197
BssECI CCNNGG 1 cut(s) 903
BssMI GATC 5 cut(s) 385, 400, 921, 994, 1107
BssNI GRCGYC 1 cut(s) 1311
BssSI CACGAG 2 cut(s) 960, 1323
BssT1I CCWWGG 1 cut(s) 903
Bst2BI CACGAG 2 cut(s) 960, 1323
Bst2UI CCWGG 4 cut(s) 365, 398, 432, 845
Bst4CI ACNGT 6 cut(s) 190, 796, 870, 1248, 1335, 1375
BstACI GRCGYC 1 cut(s) 1311
BstC8I GCNNGC 2 cut(s) 256, 1025
BstDEI CTNAG 8 cut(s) 26, 99, 141, 177, 229, 303, 453, 1082
BstF5I GGATG 3 cut(s) 142, 265, 1074
BstKTI GATC 5 cut(s) 388, 403, 924, 997, 1110
BstMAI GTCTC 2 cut(s) 1207, 1341
BstMBI GATC 5 cut(s) 385, 400, 921, 994, 1107
BstMWI GCNNNNNNNGC 3 cut(s) 824, 1078, 1415
BstNI CCWGG 4 cut(s) 365, 398, 432, 845
BstNSI RCATGY 1 cut(s) 1041
BstSCI CCNGG 5 cut(s) 49, 363, 396, 430, 843
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 2 cut(s) 436, 1289
BstX2I RGATCY 2 cut(s) 921, 1107
BstYI RGATCY 2 cut(s) 921, 1107
BsuRI GGCC 1 cut(s) 787
BtsCI GGATG 3 cut(s) 142, 265, 1074
BtsI GCAGTG 1 cut(s) 1065
BtsIMutI CAGTG 7 cut(s) 105, 186, 336, 1065, 1159, 1204, 1331
Cac8I GCNNGC 2 cut(s) 256, 1025
Cfr13I GGNCC 3 cut(s) 367, 785, 1328
Csp6I GTAC 4 cut(s) 57, 294, 945, 1249
CviAII CATG 5 cut(s) 371, 815, 1028, 1038, 1357
CviQI GTAC 4 cut(s) 57, 294, 945, 1249
DdeI CTNAG 8 cut(s) 26, 99, 141, 177, 229, 303, 453, 1082
DpnI GATC 5 cut(s) 387, 402, 923, 996, 1109
DpnII GATC 5 cut(s) 385, 400, 921, 994, 1107
DraIII CACNNNGTG 1 cut(s) 1375
DrdI GACNNNNNNGTC 1 cut(s) 1146
DseDI GACNNNNNNGTC 1 cut(s) 1146
Eco130I CCWWGG 1 cut(s) 903
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 367, 1328
Eco57I CTGAAG 2 cut(s) 343, 606
EcoRII CCWGG 4 cut(s) 363, 396, 430, 843
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 903
EcoT22I ATGCAT 1 cut(s) 1289
ErhI CCWWGG 1 cut(s) 903
Esp3I CGTCTC 1 cut(s) 1341
FaeI CATG 5 cut(s) 374, 818, 1031, 1041, 1360
FaqI GGGAC 1 cut(s) 1134
FatI CATG 5 cut(s) 370, 814, 1027, 1037, 1356
FauNDI CATATG 1 cut(s) 655
Fnu4HI GCNGC 5 cut(s) 321, 450, 1278, 1416, 1419
FokI GGATG 3 cut(s) 149, 252, 1081
Fsp4HI GCNGC 5 cut(s) 321, 450, 1278, 1416, 1419
FspBI CTAG 2 cut(s) 282, 630
GluI GCNGC 5 cut(s) 321, 450, 1278, 1416, 1419
GsaI CCCAGC 1 cut(s) 786
GsuI CTGGAG 1 cut(s) 1224
HaeIII GGCC 1 cut(s) 787
HapII CCGG 2 cut(s) 50, 204
Hin1I GRCGYC 1 cut(s) 1311
Hin1II CATG 5 cut(s) 374, 818, 1031, 1041, 1360
HincII GTYRAC 1 cut(s) 1123
HindII GTYRAC 1 cut(s) 1123
HinfI GANTC 8 cut(s) 95, 626, 667, 719, 761, 1160, 1272, 1296
HpaII CCGG 2 cut(s) 50, 204
HphI GGTGA 5 cut(s) 164, 614, 656, 710, 728
Hpy166II GTNNAC 4 cut(s) 186, 1123, 1136, 1328
Hpy188I TCNGA 7 cut(s) 27, 100, 180, 824, 999, 1018, 1095
Hpy188III TCNNGA 5 cut(s) 247, 404, 726, 765, 1241
Hpy8I GTNNAC 4 cut(s) 186, 1123, 1136, 1328
Hpy99I CGWCG 1 cut(s) 1316
HpyAV CCTTC 2 cut(s) 581, 590
HpyCH4III ACNGT 6 cut(s) 190, 796, 870, 1248, 1335, 1375
HpyCH4IV ACGT 4 cut(s) 440, 1251, 1311, 1350
HpyCH4V TGCA 6 cut(s) 344, 737, 1027, 1072, 1287, 1409
HpyF10VI GCNNNNNNNGC 3 cut(s) 824, 1078, 1415
HpyF3I CTNAG 8 cut(s) 26, 99, 141, 177, 229, 303, 453, 1082
HpySE526I ACGT 4 cut(s) 440, 1251, 1311, 1350
Hsp92I GRCGYC 1 cut(s) 1311
Hsp92II CATG 5 cut(s) 374, 818, 1031, 1041, 1360
Kzo9I GATC 5 cut(s) 385, 400, 921, 994, 1107
LmnI GCTCC 3 cut(s) 824, 1102, 1243
Lsp1109I GCAGC 2 cut(s) 436, 1289
LweI GCATC 7 cut(s) 127, 444, 493, 1021, 1059, 1168, 1296
MaeI CTAG 2 cut(s) 282, 630
MaeII ACGT 4 cut(s) 440, 1251, 1311, 1350
MaeIII GTNAC 1 cut(s) 664
MalI GATC 5 cut(s) 387, 402, 923, 996, 1109
MboI GATC 5 cut(s) 385, 400, 921, 994, 1107
MboII GAAGA 4 cut(s) 45, 349, 605, 1179
MfeI CAATTG 1 cut(s) 753
MflI RGATCY 2 cut(s) 921, 1107
MhlI GDGCHC 2 cut(s) 228, 974
MluCI AATT 5 cut(s) 345, 523, 708, 753, 933
MlyI GAGTC 3 cut(s) 104, 661, 1281
MmeI TCCRAC 2 cut(s) 478, 1381
Mph1103I ATGCAT 1 cut(s) 1289
MroXI GAANNNNTTC 1 cut(s) 1140
MseI TTAA 5 cut(s) 122, 546, 572, 707, 1423
MslI CAYNNNNRTG 2 cut(s) 443, 654
MspA1I CMGCKG 1 cut(s) 1293
MspI CCGG 2 cut(s) 50, 204
MspR9I CCNGG 5 cut(s) 51, 365, 398, 432, 845
MunI CAATTG 1 cut(s) 753
MvaI CCWGG 4 cut(s) 365, 398, 432, 845
MwoI GCNNNNNNNGC 3 cut(s) 824, 1078, 1415
NciI CCSGG 1 cut(s) 51
NdeI CATATG 1 cut(s) 655
NdeII GATC 5 cut(s) 385, 400, 921, 994, 1107
NlaIII CATG 5 cut(s) 374, 818, 1031, 1041, 1360
NlaIV GGNNCC 3 cut(s) 225, 769, 826
NmuCI GTSAC 1 cut(s) 664
NsiI ATGCAT 1 cut(s) 1289
NspI RCATGY 1 cut(s) 1041
OliI CACNNNNGTG 1 cut(s) 443
PciI ACATGT 1 cut(s) 1037
PdmI GAANNNNTTC 1 cut(s) 1140
PfeI GAWTC 5 cut(s) 626, 719, 761, 1160, 1296
PflFI GACNNNGTC 1 cut(s) 371
PfoI TCCNGGA 1 cut(s) 396
PkrI GCNGC 5 cut(s) 322, 451, 1279, 1417, 1420
PleI GAGTC 3 cut(s) 103, 661, 1280
PpsI GAGTC 3 cut(s) 103, 661, 1280
PscI ACATGT 1 cut(s) 1037
PsiI TTATAA 1 cut(s) 800
Psp6I CCWGG 4 cut(s) 363, 396, 430, 843
PspFI CCCAGC 1 cut(s) 782
PspGI CCWGG 4 cut(s) 363, 396, 430, 843
PspN4I GGNNCC 3 cut(s) 225, 769, 826
PspPI GGNCC 3 cut(s) 367, 785, 1328
PsuI RGATCY 2 cut(s) 921, 1107
PsyI GACNNNGTC 1 cut(s) 371
RsaI GTAC 4 cut(s) 58, 295, 946, 1250
RsaNI GTAC 4 cut(s) 57, 294, 945, 1249
RseI CAYNNNNRTG 2 cut(s) 443, 654
SaqAI TTAA 5 cut(s) 122, 546, 572, 707, 1423
SatI GCNGC 5 cut(s) 321, 450, 1278, 1416, 1419
Sau3AI GATC 5 cut(s) 385, 400, 921, 994, 1107
Sau96I GGNCC 3 cut(s) 367, 785, 1328
SchI GAGTC 3 cut(s) 104, 661, 1281
ScrFI CCNGG 5 cut(s) 51, 365, 398, 432, 845
SduI GDGCHC 2 cut(s) 228, 974
SfaNI GCATC 7 cut(s) 127, 444, 493, 1021, 1059, 1168, 1296
SinI GGWCC 2 cut(s) 367, 1328
SmiMI CAYNNNNRTG 2 cut(s) 443, 654
Sse9I AATT 5 cut(s) 345, 523, 708, 753, 933
SsiI CCGC 3 cut(s) 320, 758, 1293
SspMI CTAG 2 cut(s) 282, 630
StyD4I CCNGG 5 cut(s) 49, 363, 396, 430, 843
StyI CCWWGG 1 cut(s) 903
TaaI ACNGT 6 cut(s) 190, 796, 870, 1248, 1335, 1375
TaiI ACGT 4 cut(s) 443, 1254, 1314, 1353
TaqI TCGA 2 cut(s) 248, 1380
TasI AATT 5 cut(s) 345, 523, 708, 753, 933
TatI WGTACW 2 cut(s) 293, 944
TauI GCSGC 1 cut(s) 323
TfiI GAWTC 5 cut(s) 626, 719, 761, 1160, 1296
Tru1I TTAA 5 cut(s) 122, 546, 572, 707, 1423
Tru9I TTAA 5 cut(s) 122, 546, 572, 707, 1423
TscAI CASTG 7 cut(s) 112, 193, 343, 1065, 1159, 1204, 1338
TseFI GTSAC 1 cut(s) 664
TseI GCWGC 4 cut(s) 449, 1277, 1415, 1418
Tsp45I GTSAC 1 cut(s) 664
TspDTI ATGAA 4 cut(s) 17, 1179, 1288, 1345
TspGWI ACGGA 2 cut(s) 969, 1401
TspRI CASTG 7 cut(s) 112, 193, 343, 1065, 1159, 1204, 1338
Tth111I GACNNNGTC 1 cut(s) 371
VpaK11BI GGWCC 2 cut(s) 367, 1328
XceI RCATGY 1 cut(s) 1041
XcmI CCANNNNNNNNNTGG 2 cut(s) 335, 377
XmnI GAANNNNTTC 1 cut(s) 1140
XspI CTAG 2 cut(s) 282, 630
ZraI GACGTC 1 cut(s) 1312
Zsp2I ATGCAT 1 cut(s) 1289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.