Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001862

Physical Location & Seq

Genomic Coordinates Forward (+)

34162821 .. 34163344

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1282600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAAAAGGAGATTCAATGTGCGGCGATCCAGTATGGAACTGGTGCAATTTCAGGTTTCTTCCACCAGGACCATGTCCAAGTCGGTGATCTTGTTGTTAAGGATCAGGACTTTATTGAGGCAACCAAAGAGCCTGGAGTCACATTTGTGGCAGCTAAGTTTGATGGTATTCTTGGACTTGGATTTCAAGATATCTCAGTTGGAGATGCTGTTCCTGTCTGGTATAATTTGGTCAATCAAGGTCTTGTTAAAGAACCAGTTTTCTCATTTTGGTTAAATCGCAATACAGAAGGGGAAGAAAGGGGTGAGATTGTCTTTGGTGGGGTTGATTCTAGTCATTTCAAGGGTGAGCATACATATGTTCCCGTGACTCAGAAAGGCTACTGGCAGCACCTCCCTATTGGCTGGACCAACGGAAGTATGGAGAGGTGGTGGAGGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

148

Amino Acids

16.53

Weight (kDa)

5.26

Isoelectric Point (pI)

25.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Asp	PF00026	5 - 130	7.9e-46	Eukaryotic aspartyl protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11910 AT1G11910 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290
fragaria_vesca	FvH4_3g23140 FvH4_3g23140 FvH4_6g42880 FvH4_6g42880
malus_domestica	MD00G1159300.v1.1 MD09G1111100.v1.1 MD11G1213600.v1.1 MD15G1413400.v1.1 MD17G1098900.v1.1 MD17G1282600.v1.1 MD17G1282700.v1.1
prunus_persica	Prupe.3G214900_v2.0.a1 Prupe.3G214900_v2.0.a1 Prupe.4G217700_v2.0.a1
pyrus_communis	pycom03g14920 pycom09g03360 pycom11g18820 pycom17g09430
rosa_chinensis	RchiOBHm_Chr2g0158811 RchiOBHm_Chr5g0040781
rosa_laevigata	RLG00000021115 RLG00000034001
rosa_multiflora	Rmu_sc0001579.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039910 Rroxscaffold_2G00090980
rosa_rugosa	Rorug02G0472700 Rorug05G0187200 Rorug05G0187300
rosa_samantha	Rh2AG538500 Rh2BG551200 Rh2CG521800 Rh2DG561000 Rh5AG273000 Rh5BG278100 Rh5CG310100 Rh5DG286000
rosa_wichuraiana	Rw2G044570 Rw5G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	2 cut(s)	22, 111
AgsI	TTSAA	3 cut(s)	17, 188, 343
AjnI	CCWGG	2 cut(s)	66, 133
AleI	CACNNNNGTG	1 cut(s)	146
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AlwI	GGATC	2 cut(s)	22, 111
ApeKI	GCWGC	2 cut(s)	152, 388
AspS9I	GGNCC	2 cut(s)	70, 408
AsuHPI	GGTGA	3 cut(s)	98, 317, 359
AvaII	GGWCC	2 cut(s)	70, 408
BbvI	GCAGC	2 cut(s)	164, 400
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	2 cut(s)	68, 135
BfaI	CTAG	1 cut(s)	333
BisI	GCNGC	3 cut(s)	24, 153, 389
BlsI	GCNGC	3 cut(s)	25, 154, 390
Bme1390I	CCNGG	2 cut(s)	68, 135
Bme18I	GGWCC	2 cut(s)	70, 408
BmgT120I	GGNCC	2 cut(s)	70, 408
BmrFI	CCNGG	2 cut(s)	68, 135
BmsI	GCATC	1 cut(s)	196
BpmI	CTGGAG	1 cut(s)	156
BsaXI	ACNNNNNCTCC	3 cut(s)	195, 225, 416
Bse1I	ACTGG	4 cut(s)	31, 46, 257, 389
BseBI	CCWGG	2 cut(s)	68, 135
BseMII	CTCAG	2 cut(s)	210, 386
BseNI	ACTGG	4 cut(s)	31, 46, 257, 389
BseXI	GCAGC	2 cut(s)	164, 400
Bsp143I	GATC	3 cut(s)	27, 88, 103
BspACI	CCGC	1 cut(s)	23
BspCNI	CTCAG	2 cut(s)	209, 385
BspPI	GGATC	2 cut(s)	22, 111
BsrI	ACTGG	4 cut(s)	31, 46, 257, 389
BssMI	GATC	3 cut(s)	27, 88, 103
Bst2UI	CCWGG	2 cut(s)	68, 135
BstDEI	CTNAG	3 cut(s)	156, 196, 372
BstKTI	GATC	3 cut(s)	30, 91, 106
BstMBI	GATC	3 cut(s)	27, 88, 103
BstNI	CCWGG	2 cut(s)	68, 135
BstSCI	CCNGG	2 cut(s)	66, 133
BstV1I	GCAGC	2 cut(s)	164, 400
Cfr13I	GGNCC	2 cut(s)	70, 408
CviAII	CATG	1 cut(s)	74
CviJI	RGCY	5 cut(s)	133, 155, 381, 405, 439
CviKI_1	RGCY	5 cut(s)	133, 155, 381, 405, 439
DdeI	CTNAG	3 cut(s)	156, 196, 372
DpnI	GATC	3 cut(s)	29, 90, 105
DpnII	GATC	3 cut(s)	27, 88, 103
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	70, 408
EcoRII	CCWGG	2 cut(s)	66, 133
EcoRV	GATATC	1 cut(s)	193
FaeI	CATG	1 cut(s)	77
FaiI	YATR	7 cut(s)	36, 75, 225, 354, 358, 360, 422
FatI	CATG	1 cut(s)	73
FauNDI	CATATG	1 cut(s)	358
Fnu4HI	GCNGC	3 cut(s)	24, 153, 389
Fsp4HI	GCNGC	3 cut(s)	24, 153, 389
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	3 cut(s)	24, 153, 389
GsuI	CTGGAG	1 cut(s)	156
Hin1II	CATG	1 cut(s)	77
HinfI	GANTC	4 cut(s)	13, 138, 329, 370
HphI	GGTGA	3 cut(s)	98, 317, 359
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	2 cut(s)	107, 188
HpyAV	CCTTC	1 cut(s)	284
HpyCH4V	TGCA	1 cut(s)	47
HpyF3I	CTNAG	3 cut(s)	156, 196, 372
Hsp92II	CATG	1 cut(s)	77
Kzo9I	GATC	3 cut(s)	27, 88, 103
Lsp1109I	GCAGC	2 cut(s)	164, 400
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	2 cut(s)	139, 367
MalI	GATC	3 cut(s)	29, 90, 105
MboI	GATC	3 cut(s)	27, 88, 103
MboII	GAAGA	2 cut(s)	52, 308
MluCI	AATT	2 cut(s)	48, 226
MlyI	GAGTC	2 cut(s)	147, 364
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	4 cut(s)	112, 404, 420, 429
MseI	TTAA	3 cut(s)	99, 249, 275
MslI	CAYNNNNRTG	2 cut(s)	146, 357
MspR9I	CCNGG	2 cut(s)	68, 135
MvaI	CCWGG	2 cut(s)	68, 135
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	3 cut(s)	27, 88, 103
NlaIII	CATG	1 cut(s)	77
NmuCI	GTSAC	2 cut(s)	139, 367
OliI	CACNNNNGTG	1 cut(s)	146
PfeI	GAWTC	2 cut(s)	13, 329
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	25, 154, 390
PleI	GAGTC	2 cut(s)	146, 364
PpsI	GAGTC	2 cut(s)	146, 364
Psp6I	CCWGG	2 cut(s)	66, 133
PspGI	CCWGG	2 cut(s)	66, 133
PspPI	GGNCC	2 cut(s)	70, 408
PsyI	GACNNNGTC	1 cut(s)	74
RseI	CAYNNNNRTG	2 cut(s)	146, 357
SaqAI	TTAA	3 cut(s)	99, 249, 275
SatI	GCNGC	3 cut(s)	24, 153, 389
Sau3AI	GATC	3 cut(s)	27, 88, 103
Sau96I	GGNCC	2 cut(s)	70, 408
SchI	GAGTC	2 cut(s)	147, 364
ScrFI	CCNGG	2 cut(s)	68, 135
SetI	ASST	5 cut(s)	58, 157, 244, 396, 431
SfaNI	GCATC	1 cut(s)	196
SinI	GGWCC	2 cut(s)	70, 408
SmiMI	CAYNNNNRTG	2 cut(s)	146, 357
Sse9I	AATT	2 cut(s)	48, 226
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	66, 133
TasI	AATT	2 cut(s)	48, 226
TauI	GCSGC	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	13, 329
Tru1I	TTAA	3 cut(s)	99, 249, 275
Tru9I	TTAA	3 cut(s)	99, 249, 275
TseFI	GTSAC	2 cut(s)	139, 367
TseI	GCWGC	2 cut(s)	152, 388
Tsp45I	GTSAC	2 cut(s)	139, 367
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	429
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	2 cut(s)	70, 408
XcmI	CCANNNNNNNNNTGG	2 cut(s)	38, 418
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.