Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001862

Physical Location & Seq

Genomic Coordinates Reverse (-)

2498080 .. 2499719

Gene Structure 1640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03360.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTGGTAGCCAAGGCACAACCCCAAAAGATCTGCTCTCAAATTGGTTTCTGTACTTTTGACGGAACTCGTGGTGTGAGCACGGGGATTGAAAGTATGGTGGATCAGAAACAAGAAAAGAAATCTGATGGCGTGCATGATGCCACATGTGCTGCTTGTGAGATGGCAGTGGTGTGGATGCAGAATAAGCTAATGAAAAATCAGACAGAGGAGCAGATCTTGGATTATGTCAATCAGCTCTGTGAACGACTTCCCAGTCCCAGTGGAGAATCAGTAGTAGAGTGTGATGCTCTATCTTCATTGCCCAGTGTCTCGTTTACCATTGGTGGTAAAGTATTTGACCTTGATCCAGAACAGTACGTTCTCAAAGTTGGGGAGGGAGTCGCAGCTCAATGCATCAGCGGATTCATAGCTTTAGACATCGCACCTCCTCGTGGACCACTGTGGATTTTGGGAGACGTTTTCATGGGTAAGTATCACACTGTGTTCGACTATGGAAACTCGTCAGTTGGATTTGCAGAAGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

177

Amino Acids

18.98

Weight (kDa)

4.6

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11910 AT1G11910 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290
fragaria_vesca	FvH4_3g23140 FvH4_3g23140 FvH4_6g42880 FvH4_6g42880
malus_domestica	MD00G1159300.v1.1 MD09G1111100.v1.1 MD11G1213600.v1.1 MD15G1413400.v1.1 MD17G1098900.v1.1 MD17G1282600.v1.1 MD17G1282700.v1.1
prunus_persica	Prupe.3G214900_v2.0.a1 Prupe.3G214900_v2.0.a1 Prupe.4G217700_v2.0.a1
pyrus_communis	pycom03g14920 pycom09g03360 pycom11g18820 pycom17g09430
rosa_chinensis	RchiOBHm_Chr2g0158811 RchiOBHm_Chr5g0040781
rosa_laevigata	RLG00000021115 RLG00000034001
rosa_multiflora	Rmu_sc0001579.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039910 Rroxscaffold_2G00090980
rosa_rugosa	Rorug02G0472700 Rorug05G0187200 Rorug05G0187300
rosa_samantha	Rh2AG538500 Rh2BG551200 Rh2CG521800 Rh2DG561000 Rh5AG273000 Rh5BG278100 Rh5CG310100 Rh5DG286000
rosa_wichuraiana	Rw2G044570 Rw5G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	255
AciI	CCGC	1 cut(s)	402
AclWI	GGATC	2 cut(s)	111, 341
AdeI	CACNNNGTG	1 cut(s)	484
AfaI	GTAC	2 cut(s)	55, 359
AfiI	CCNNNNNNNGG	1 cut(s)	434
AflIII	ACRYGT	1 cut(s)	146
AgsI	TTSAA	1 cut(s)	92
AluBI	AGCT	5 cut(s)	190, 238, 389, 413, 527
AluI	AGCT	5 cut(s)	190, 238, 389, 413, 527
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	2 cut(s)	316, 450
AlwI	GGATC	2 cut(s)	111, 341
ApeKI	GCWGC	3 cut(s)	152, 386, 524
Asp700I	GAANNNNTTC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	437
BauI	CACGAG	2 cut(s)	69, 432
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	139, 398
BccI	CCATC	2 cut(s)	122, 157
BcoDI	GTCTC	2 cut(s)	316, 450
BglII	AGATCT	2 cut(s)	30, 216
BisI	GCNGC	3 cut(s)	153, 387, 525
BlsI	GCNGC	3 cut(s)	154, 388, 526
Bme18I	GGWCC	1 cut(s)	437
BmgT120I	GGNCC	1 cut(s)	437
BmrI	ACTGGG	3 cut(s)	249, 255, 300
BmsI	GCATC	4 cut(s)	130, 168, 277, 405
BmuI	ACTGGG	3 cut(s)	249, 255, 300
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	1 cut(s)	434
Bse1I	ACTGG	3 cut(s)	255, 261, 306
Bse3DI	GCAATG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	434
BseMI	GCAATG	1 cut(s)	299
BseNI	ACTGG	3 cut(s)	255, 261, 306
BseRI	GAGGAG	2 cut(s)	224, 420
BseXI	GCAGC	2 cut(s)	139, 398
BsiHKAI	GWGCWC	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	1 cut(s)	434
BsmAI	GTCTC	2 cut(s)	316, 450
BsmBI	CGTCTC	1 cut(s)	450
BsmFI	GGGAC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	4 cut(s)	30, 103, 216, 346
BspACI	CCGC	1 cut(s)	402
BspPI	GGATC	2 cut(s)	111, 341
BsrDI	GCAATG	1 cut(s)	299
BsrI	ACTGG	3 cut(s)	255, 261, 306
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	4 cut(s)	30, 103, 216, 346
BssSI	CACGAG	2 cut(s)	69, 432
BssT1I	CCWWGG	1 cut(s)	12
Bst2BI	CACGAG	2 cut(s)	69, 432
Bst4CI	ACNGT	3 cut(s)	357, 444, 484
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	528
BstF5I	GGATG	1 cut(s)	183
BstKTI	GATC	4 cut(s)	33, 106, 219, 349
BstMAI	GTCTC	2 cut(s)	316, 450
BstMBI	GATC	4 cut(s)	30, 103, 216, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	149, 187, 524
BstNSI	RCATGY	1 cut(s)	150
BstV1I	GCAGC	2 cut(s)	139, 398
BstX2I	RGATCY	2 cut(s)	30, 216
BstYI	RGATCY	2 cut(s)	30, 216
BtgZI	GCGATG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	183
BtsI	GCAGTG	1 cut(s)	174
BtsIMutI	CAGTG	5 cut(s)	174, 268, 313, 440, 480
Cac8I	GCNNGC	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	437
Csp6I	GTAC	2 cut(s)	54, 358
CviAII	CATG	3 cut(s)	137, 147, 466
CviJI	RGCY	6 cut(s)	11, 190, 238, 389, 413, 527
CviKI_1	RGCY	6 cut(s)	11, 190, 238, 389, 413, 527
CviQI	GTAC	2 cut(s)	54, 358
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	4 cut(s)	32, 105, 218, 348
DpnII	GATC	4 cut(s)	30, 103, 216, 346
DraIII	CACNNNGTG	1 cut(s)	484
DrdI	GACNNNNNNGTC	1 cut(s)	255
DseDI	GACNNNNNNGTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	12
EcoT22I	ATGCAT	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	450
FaeI	CATG	3 cut(s)	140, 150, 469
FaiI	YATR	7 cut(s)	98, 138, 148, 228, 410, 467, 495
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	3 cut(s)	136, 146, 465
Fnu4HI	GCNGC	3 cut(s)	153, 387, 525
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	3 cut(s)	153, 387, 525
GluI	GCNGC	3 cut(s)	153, 387, 525
Hin1II	CATG	3 cut(s)	140, 150, 469
HinfI	GANTC	3 cut(s)	269, 381, 405
Hpy166II	GTNNAC	3 cut(s)	245, 318, 437
Hpy188I	TCNGA	3 cut(s)	108, 127, 204
Hpy188III	TCNNGA	1 cut(s)	350
Hpy8I	GTNNAC	3 cut(s)	245, 318, 437
HpyCH4III	ACNGT	3 cut(s)	357, 444, 484
HpyCH4IV	ACGT	2 cut(s)	360, 459
HpyCH4V	TGCA	4 cut(s)	136, 181, 396, 518
HpyF10VI	GCNNNNNNNGC	3 cut(s)	149, 187, 524
HpyF3I	CTNAG	1 cut(s)	528
HpySE526I	ACGT	2 cut(s)	360, 459
Hsp92II	CATG	3 cut(s)	140, 150, 469
Kzo9I	GATC	4 cut(s)	30, 103, 216, 346
LmnI	GCTCC	1 cut(s)	211
LpnPI	CCDG	4 cut(s)	268, 274, 319, 363
Lsp1109I	GCAGC	2 cut(s)	139, 398
LweI	GCATC	4 cut(s)	130, 168, 277, 405
MaeII	ACGT	2 cut(s)	360, 459
MalI	GATC	4 cut(s)	32, 105, 218, 348
MboI	GATC	4 cut(s)	30, 103, 216, 346
MboII	GAAGA	1 cut(s)	288
MflI	RGATCY	2 cut(s)	30, 216
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	390
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	4 cut(s)	202, 370, 438, 441
Mph1103I	ATGCAT	1 cut(s)	398
MroXI	GAANNNNTTC	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	149, 187, 524
NdeII	GATC	4 cut(s)	30, 103, 216, 346
NlaIII	CATG	3 cut(s)	140, 150, 469
NsiI	ATGCAT	1 cut(s)	398
NspI	RCATGY	1 cut(s)	150
PciI	ACATGT	1 cut(s)	146
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	269, 405
PkrI	GCNGC	3 cut(s)	154, 388, 526
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PscI	ACATGT	1 cut(s)	146
PspPI	GGNCC	1 cut(s)	437
PsuI	RGATCY	2 cut(s)	30, 216
RsaI	GTAC	2 cut(s)	55, 359
RsaNI	GTAC	2 cut(s)	54, 358
SatI	GCNGC	3 cut(s)	153, 387, 525
Sau3AI	GATC	4 cut(s)	30, 103, 216, 346
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	1 cut(s)	390
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	9 cut(s)	192, 240, 345, 363, 391, 415, 430, 462, 529
SfaNI	GCATC	4 cut(s)	130, 168, 277, 405
SinI	GGWCC	1 cut(s)	437
Sse9I	AATT	1 cut(s)	42
SsiI	CCGC	1 cut(s)	402
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	357, 444, 484
TaiI	ACGT	2 cut(s)	363, 462
TaqI	TCGA	1 cut(s)	489
TasI	AATT	1 cut(s)	42
TatI	WGTACW	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	269, 405
TscAI	CASTG	5 cut(s)	174, 268, 313, 447, 487
TseI	GCWGC	3 cut(s)	152, 386, 524
TspDTI	ATGAA	4 cut(s)	209, 288, 397, 454
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	5 cut(s)	174, 268, 313, 447, 487
VpaK11BI	GGWCC	1 cut(s)	437
XceI	RCATGY	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	249
Zsp2I	ATGCAT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.