MD17G1098900.v1.1

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
8394267 .. 8399524
5258 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1098900.v1.1.491

Sequence Viewer

Length: 1617 bp
ATGCTCTTGACTTTAGTTTCCTTGTTGTTTCAGTTTCCATCTGATCCTTCGCAGTTCGTCGTCATAAGAAAAATTTCTCCGAAAATGGGTACCCAATTTCGAGCTGGTTTGGTCACTTCCTTTCTGTTCTTGCTTCTGTCCCATGTGGTGATTTCCACACCCAGTGATGGGTTGGTCAGGATTGGACTGAAAAAGATGAAAATAGATCAAACTTGTCATCTAAATAGAAGAAATAATGGAACACCGGGAGGTCCGATTAGGAAGTATCATTTGCGCGGTAATCTTGGGGAGTCCGAGGACACGGATATTGTTGCACTGAAGAACTATATGGATGCACAGTATTTTGGTGAGATTGGCATTGGAACTCCTGCTCAGAAGTTCACTGTGATATTTGACACCGGAAGTTCTAATCTTTGGGTGCCCTCAGCAAAGTGTTATTTCTCGGTTGCTTGCTATTTGCATCCCAAGTATAAGTCTAGCCAATCTAGTACATACACAAAGAATGGCAAATCTGCAGCGATCCAGTATGGAACTGGTGCAATTTCAGGTTTCTTCAGCCAGGACCATATCCAAGTCGGCGATCTTGTTGTTAAGGATCAGGACTTTATTGAGGCAACCAAAGAGCCTGGAGTCACGTTTGTGGCAGCTAAGTTTGATGGTATTCTTGGACTTGGATTTCAAGAGATCTCAGTTGGAGATGCTGTTCCCGTCTGGTATAATTTGGTTAATCAAGGTCTTGTTAAAGAACCAGTTTTCTCATTTTGGTTAAATCGCAATACAGAAGGGGAAGAAGGGGGTGAGATTGTCTTTGGTGGGGTTGATTCTAGTCATTTCAAGGGTAAGCATACGTATGTTCCTGTGACTCAGAAAGGCTACTGGCAGTTTGATATGGGTGATGTCTTAATTGATGGTGAATCATCTGGATTTTGTGCTAATGGCTGTTCAGCAATTGCTGACTCAGGCACCTCCCTATTGGCTGGACCAACGACTGTTGTCACTCAAATCAATCATGCCATTGGAGCCTCTGGTGTTGTAAGCCAGGAATGTAAGACCGTGGTTGAACAATATGGGAAAACCATAATAGAAATGTTGATGGCTAAGTCACAACCCCAAAAGGTCTGCTCTCAAATTGGTTTCTGTACTTTTGATGGAACTCGTGGTGTGAGCACGGGCATTGAAAGTATGGTGGATCAGAAACCAGAAAAGCAATCTGATGGCGTGAATGATGCTACATGTGCTGCTTGTGAGATGGCAGTGGTATGGATGCAGAGTCGGCTAAGGAAAAATCAGACAGAGGAGCAGATCTTGGATTATGTCAATCAGCTCTGTGAACGACTTCCAAGTCCCAGTGGAGAATCAGTAGTCCAGTGTGATGCTCTATCCTCATTGCCCAGTGTGTCATTTACCATTGGTGGTAAAGTATTTGACCTTGCTCCAGAGCAGTACATTCTCAAAGTTGGGGAGGGAGTCGCAGCTCAGTGCATCAGTGGATTTATAGCTTTAGATGTCGCTCCTCCTCGCGGACCACTGTGGATTCTGGGAGACATTTTCATGGGTCGGTATCACACCGTGTTCGACTACGGAAACTTGTCAGTTGGATTTGCAGAAGCAGCTTAG

Protein Analysis

539

Amino Acids

58.24

Weight (kDa)

5.48

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asp PF00026 113 - 537 3.2e-117 Eukaryotic aspartyl protease
TAXi_N PF14543 114 - 272 1.1e-10 Xylanase inhibitor N-terminal
SapB_2 PF03489 347 - 380 1.3e-12 Saposin-like type B, region 2
SapB_1 PF05184 411 - 447 5.2e-13 Saposin-like type B, region 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1341
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 3 cut(s) 89, 418, 962
AccII CGCG 2 cut(s) 276, 1521
AciI CCGC 2 cut(s) 276, 1521
AclWI GGATC 4 cut(s) 38, 514, 603, 1197
AcsI RAATTY 1 cut(s) 72
AcuI CTGAAG 2 cut(s) 338, 538
AdeI CACNNNGTG 2 cut(s) 164, 1570
AfaI GTAC 4 cut(s) 91, 490, 1141, 1445
AfiI CCNNNNNNNGG 4 cut(s) 86, 167, 168, 1520
AflIII ACRYGT 1 cut(s) 1232
AgsI TTSAA 4 cut(s) 680, 835, 1061, 1178
AjnI CCWGG 3 cut(s) 558, 625, 1038
AleI CACNNNNGTG 1 cut(s) 638
AloI GAACNNNNNNTCC 2 cut(s) 687, 719
AluBI AGCT 6 cut(s) 104, 647, 1324, 1475, 1499, 1613
AluI AGCT 6 cut(s) 104, 647, 1324, 1475, 1499, 1613
Alw21I GWGCWC 1 cut(s) 1169
Alw26I GTCTC 1 cut(s) 1536
AlwI GGATC 4 cut(s) 38, 514, 603, 1197
ApeKI GCWGC 5 cut(s) 515, 644, 1238, 1472, 1610
ApoI RAATTY 1 cut(s) 72
Asp700I GAANNNNTTC 2 cut(s) 73, 1335
Asp718I GGTACC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 276
AspS9I GGNCC 4 cut(s) 251, 562, 980, 1523
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 5 cut(s) 160, 359, 809, 905, 923
AvaII GGWCC 4 cut(s) 251, 562, 980, 1523
BaeGI GKGCMC 1 cut(s) 423
BanI GGYRCC 3 cut(s) 89, 418, 962
BauI CACGAG 1 cut(s) 1155
Bbv12I GWGCWC 1 cut(s) 1169
BbvCI CCTCAGC 1 cut(s) 424
BbvI GCAGC 4 cut(s) 527, 656, 1225, 1484
BccI CCATC 8 cut(s) 46, 161, 650, 902, 1087, 1142, 1208, 1243
BciT130I CCWGG 3 cut(s) 560, 627, 1040
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 1536
BfaI CTAG 3 cut(s) 477, 486, 825
BfmI CTRYAG 1 cut(s) 513
BglII AGATCT 2 cut(s) 684, 1302
BisI GCNGC 5 cut(s) 516, 645, 1239, 1473, 1611
BlsI GCNGC 5 cut(s) 517, 646, 1240, 1474, 1612
Bme1390I CCNGG 4 cut(s) 246, 560, 627, 1040
Bme18I GGWCC 4 cut(s) 251, 562, 980, 1523
BmgT120I GGNCC 4 cut(s) 251, 562, 980, 1523
BmiI GGNNCC 4 cut(s) 91, 420, 964, 1021
BmrFI CCNGG 4 cut(s) 246, 560, 627, 1040
BmrI ACTGGG 3 cut(s) 156, 1341, 1386
BmsI GCATC 7 cut(s) 322, 469, 688, 1216, 1254, 1363, 1491
BmuI ACTGGG 3 cut(s) 156, 1341, 1386
BoxI GACNNNNGTC 1 cut(s) 992
BpmI CTGGAG 2 cut(s) 648, 1419
Bpu10I CCTNAGC 2 cut(s) 424, 1277
BpuMI CCSGG 1 cut(s) 246
BsaAI YACGTR 1 cut(s) 849
BsaJI CCNNGG 2 cut(s) 294, 1053
BsaWI WCCGGW 1 cut(s) 398
BsaXI ACNNNNNCTCC 4 cut(s) 687, 717, 1344, 1374
Bsc4I CCNNNNNNNGG 4 cut(s) 86, 167, 168, 1520
Bse1I ACTGG 8 cut(s) 162, 523, 538, 749, 881, 1347, 1366, 1392
Bse3DI GCAATG 1 cut(s) 1385
BseBI CCWGG 3 cut(s) 560, 627, 1040
BseDI CCNNGG 2 cut(s) 294, 1053
BseGI GGATG 3 cut(s) 337, 460, 1269
BseLI CCNNNNNNNGG 4 cut(s) 86, 167, 168, 1520
BseMI GCAATG 1 cut(s) 1385
BseMII CTCAG 6 cut(s) 386, 438, 702, 878, 972, 1490
BseNI ACTGG 8 cut(s) 162, 523, 538, 749, 881, 1347, 1366, 1392
BseRI GAGGAG 3 cut(s) 1310, 1503, 1506
BseSI GKGCMC 1 cut(s) 423
BseXI GCAGC 4 cut(s) 527, 656, 1225, 1484
Bsh1236I CGCG 2 cut(s) 276, 1521
BshNI GGYRCC 3 cut(s) 89, 418, 962
BsiHKAI GWGCWC 1 cut(s) 1169
BsiSI CCGG 2 cut(s) 245, 399
BslFI GGGAC 2 cut(s) 124, 1329
BslI CCNNNNNNNGG 4 cut(s) 86, 167, 168, 1520
BsmAI GTCTC 1 cut(s) 1536
BsmFI GGGAC 2 cut(s) 124, 1329
Bsp1286I GDGCHC 2 cut(s) 423, 1169
Bsp143I GATC 8 cut(s) 43, 205, 519, 580, 595, 684, 1189, 1302
BspACI CCGC 2 cut(s) 276, 1521
BspCNI CTCAG 6 cut(s) 385, 437, 701, 877, 971, 1489
BspFNI CGCG 2 cut(s) 276, 1521
BspLI GGNNCC 4 cut(s) 91, 420, 964, 1021
BspMAI CTGCAG 1 cut(s) 517
BspPI GGATC 4 cut(s) 38, 514, 603, 1197
BspT107I GGYRCC 3 cut(s) 89, 418, 962
BsrDI GCAATG 1 cut(s) 1385
BsrI ACTGG 8 cut(s) 162, 523, 538, 749, 881, 1347, 1366, 1392
BssECI CCNNGG 2 cut(s) 294, 1053
BssMI GATC 8 cut(s) 43, 205, 519, 580, 595, 684, 1189, 1302
BssSI CACGAG 1 cut(s) 1155
Bst2BI CACGAG 1 cut(s) 1155
Bst2UI CCWGG 3 cut(s) 560, 627, 1040
Bst4CI ACNGT 6 cut(s) 339, 385, 991, 1054, 1530, 1570
BstBAI YACGTR 1 cut(s) 849
BstC8I GCNNGC 1 cut(s) 451
BstDSI CCRYGG 1 cut(s) 1053
BstF5I GGATG 3 cut(s) 337, 460, 1269
BstFNI CGCG 2 cut(s) 276, 1521
BstHHI GCGC 1 cut(s) 276
BstKTI GATC 8 cut(s) 46, 208, 522, 583, 598, 687, 1192, 1305
BstMAI GTCTC 1 cut(s) 1536
BstMBI GATC 8 cut(s) 43, 205, 519, 580, 595, 684, 1189, 1302
BstMWI GCNNNNNNNGC 4 cut(s) 1019, 1235, 1273, 1610
BstNI CCWGG 3 cut(s) 560, 627, 1040
BstNSI RCATGY 1 cut(s) 1236
BstPAI GACNNNNGTC 1 cut(s) 992
BstSCI CCNGG 4 cut(s) 244, 558, 625, 1038
BstSFI CTRYAG 1 cut(s) 513
BstSLI GKGCMC 1 cut(s) 423
BstSNI TACGTA 1 cut(s) 849
BstUI CGCG 2 cut(s) 276, 1521
BstV1I GCAGC 4 cut(s) 527, 656, 1225, 1484
BstX2I RGATCY 2 cut(s) 684, 1302
BstYI RGATCY 2 cut(s) 684, 1302
BtgI CCRYGG 1 cut(s) 1053
BtsCI GGATG 3 cut(s) 337, 460, 1269
BtsI GCAGTG 1 cut(s) 1260
Cac8I GCNNGC 1 cut(s) 451
CfoI GCGC 1 cut(s) 276
Cfr13I GGNCC 4 cut(s) 251, 562, 980, 1523
Csp6I GTAC 4 cut(s) 90, 489, 1140, 1444
CviAII CATG 4 cut(s) 143, 1010, 1233, 1552
CviQI GTAC 4 cut(s) 90, 489, 1140, 1444
DpnI GATC 8 cut(s) 45, 207, 521, 582, 597, 686, 1191, 1304
DpnII GATC 8 cut(s) 43, 205, 519, 580, 595, 684, 1189, 1302
DraIII CACNNNGTG 2 cut(s) 164, 1570
DrdI GACNNNNNNGTC 1 cut(s) 1341
DseDI GACNNNNNNGTC 1 cut(s) 1341
Eco105I TACGTA 1 cut(s) 849
Eco47I GGWCC 4 cut(s) 251, 562, 980, 1523
Eco57I CTGAAG 2 cut(s) 338, 538
EcoRII CCWGG 3 cut(s) 558, 625, 1038
FaeI CATG 4 cut(s) 146, 1013, 1236, 1555
FaqI GGGAC 2 cut(s) 124, 1329
FatI CATG 4 cut(s) 142, 1009, 1232, 1551
Fnu4HI GCNGC 5 cut(s) 516, 645, 1239, 1473, 1611
FokI GGATG 3 cut(s) 344, 447, 1276
Fsp4HI GCNGC 5 cut(s) 516, 645, 1239, 1473, 1611
FspBI CTAG 3 cut(s) 477, 486, 825
GlaI GCGC 1 cut(s) 275
GluI GCNGC 5 cut(s) 516, 645, 1239, 1473, 1611
GsuI CTGGAG 2 cut(s) 648, 1419
HapII CCGG 2 cut(s) 245, 399
HhaI GCGC 1 cut(s) 276
Hin1II CATG 4 cut(s) 146, 1013, 1236, 1555
Hin6I GCGC 1 cut(s) 274
HinP1I GCGC 1 cut(s) 274
HpaII CCGG 2 cut(s) 245, 399
HphI GGTGA 5 cut(s) 160, 359, 809, 905, 923
Hpy166II GTNNAC 2 cut(s) 381, 1331
Hpy188I TCNGA 9 cut(s) 43, 81, 255, 295, 375, 867, 1194, 1213, 1290
Hpy188III TCNNGA 6 cut(s) 7, 178, 599, 680, 921, 1436
Hpy8I GTNNAC 2 cut(s) 381, 1331
Hpy99I CGWCG 1 cut(s) 62
HpyAV CCTTC 3 cut(s) 57, 776, 785
HpyCH4III ACNGT 6 cut(s) 339, 385, 991, 1054, 1530, 1570
HpyCH4IV ACGT 2 cut(s) 635, 848
HpyCH4V TGCA 8 cut(s) 314, 335, 460, 515, 539, 1267, 1482, 1604
HpyF10VI GCNNNNNNNGC 4 cut(s) 1019, 1235, 1273, 1610
HpySE526I ACGT 2 cut(s) 635, 848
Hsp92II CATG 4 cut(s) 146, 1013, 1236, 1555
HspAI GCGC 1 cut(s) 274
KpnI GGTACC 1 cut(s) 93
Kzo9I GATC 8 cut(s) 43, 205, 519, 580, 595, 684, 1189, 1302
LmnI GCTCC 4 cut(s) 1019, 1297, 1438, 1516
Lsp1109I GCAGC 4 cut(s) 527, 656, 1225, 1484
LweI GCATC 7 cut(s) 322, 469, 688, 1216, 1254, 1363, 1491
MaeI CTAG 3 cut(s) 477, 486, 825
MaeII ACGT 2 cut(s) 635, 848
MaeIII GTNAC 5 cut(s) 112, 631, 859, 994, 1101
MalI GATC 8 cut(s) 45, 207, 521, 582, 597, 686, 1191, 1304
MboI GATC 8 cut(s) 43, 205, 519, 580, 595, 684, 1189, 1302
MboII GAAGA 4 cut(s) 240, 331, 544, 800
MfeI CAATTG 1 cut(s) 948
MflI RGATCY 2 cut(s) 684, 1302
MhlI GDGCHC 2 cut(s) 423, 1169
MluCI AATT 7 cut(s) 72, 95, 540, 718, 903, 948, 1128
MlyI GAGTC 6 cut(s) 299, 639, 856, 950, 1279, 1476
MmeI TCCRAC 2 cut(s) 673, 1576
MroXI GAANNNNTTC 2 cut(s) 73, 1335
MseI TTAA 5 cut(s) 591, 726, 741, 767, 902
MslI CAYNNNNRTG 3 cut(s) 638, 849, 1550
MspI CCGG 2 cut(s) 245, 399
MspR9I CCNGG 4 cut(s) 246, 560, 627, 1040
MunI CAATTG 1 cut(s) 948
MvaI CCWGG 3 cut(s) 560, 627, 1040
MvnI CGCG 2 cut(s) 276, 1521
MwoI GCNNNNNNNGC 4 cut(s) 1019, 1235, 1273, 1610
NciI CCSGG 1 cut(s) 246
NdeII GATC 8 cut(s) 43, 205, 519, 580, 595, 684, 1189, 1302
NlaIII CATG 4 cut(s) 146, 1013, 1236, 1555
NlaIV GGNNCC 4 cut(s) 91, 420, 964, 1021
NmuCI GTSAC 5 cut(s) 112, 631, 859, 994, 1101
NspI RCATGY 1 cut(s) 1236
OliI CACNNNNGTG 1 cut(s) 638
PciI ACATGT 1 cut(s) 1232
PdmI GAANNNNTTC 2 cut(s) 73, 1335
PfeI GAWTC 4 cut(s) 821, 914, 1355, 1534
PkrI GCNGC 5 cut(s) 517, 646, 1240, 1474, 1612
PleI GAGTC 6 cut(s) 298, 638, 856, 950, 1278, 1475
PpsI GAGTC 6 cut(s) 298, 638, 856, 950, 1278, 1475
Ppu21I YACGTR 1 cut(s) 849
PscI ACATGT 1 cut(s) 1232
PshAI GACNNNNGTC 1 cut(s) 992
Psp6I CCWGG 3 cut(s) 558, 625, 1038
PspGI CCWGG 3 cut(s) 558, 625, 1038
PspN4I GGNNCC 4 cut(s) 91, 420, 964, 1021
PspPI GGNCC 4 cut(s) 251, 562, 980, 1523
PstI CTGCAG 1 cut(s) 517
PsuI RGATCY 2 cut(s) 684, 1302
RsaI GTAC 4 cut(s) 91, 490, 1141, 1445
RsaNI GTAC 4 cut(s) 90, 489, 1140, 1444
RseI CAYNNNNRTG 3 cut(s) 638, 849, 1550
SaqAI TTAA 5 cut(s) 591, 726, 741, 767, 902
SatI GCNGC 5 cut(s) 516, 645, 1239, 1473, 1611
Sau3AI GATC 8 cut(s) 43, 205, 519, 580, 595, 684, 1189, 1302
Sau96I GGNCC 4 cut(s) 251, 562, 980, 1523
SchI GAGTC 6 cut(s) 299, 639, 856, 950, 1279, 1476
ScrFI CCNGG 4 cut(s) 246, 560, 627, 1040
SduI GDGCHC 2 cut(s) 423, 1169
SfaNI GCATC 7 cut(s) 322, 469, 688, 1216, 1254, 1363, 1491
SfcI CTRYAG 1 cut(s) 513
SinI GGWCC 4 cut(s) 251, 562, 980, 1523
SmiMI CAYNNNNRTG 3 cut(s) 638, 849, 1550
SnaBI TACGTA 1 cut(s) 849
Sse9I AATT 7 cut(s) 72, 95, 540, 718, 903, 948, 1128
SsiI CCGC 2 cut(s) 276, 1521
SspMI CTAG 3 cut(s) 477, 486, 825
StyD4I CCNGG 4 cut(s) 244, 558, 625, 1038
TaaI ACNGT 6 cut(s) 339, 385, 991, 1054, 1530, 1570
TaiI ACGT 2 cut(s) 638, 851
TaqI TCGA 2 cut(s) 100, 1575
TasI AATT 7 cut(s) 72, 95, 540, 718, 903, 948, 1128
TatI WGTACW 3 cut(s) 488, 1139, 1443
TfiI GAWTC 4 cut(s) 821, 914, 1355, 1534
Tru1I TTAA 5 cut(s) 591, 726, 741, 767, 902
Tru9I TTAA 5 cut(s) 591, 726, 741, 767, 902
TseFI GTSAC 5 cut(s) 112, 631, 859, 994, 1101
TseI GCWGC 5 cut(s) 515, 644, 1238, 1472, 1610
Tsp45I GTSAC 5 cut(s) 112, 631, 859, 994, 1101
TspDTI ATGAA 2 cut(s) 212, 1540
TspGWI ACGGA 2 cut(s) 317, 1596
VpaK11BI GGWCC 4 cut(s) 251, 562, 980, 1523
XapI RAATTY 1 cut(s) 72
XceI RCATGY 1 cut(s) 1236
XcmI CCANNNNNNNNNTGG 3 cut(s) 101, 169, 530
XmnI GAANNNNTTC 2 cut(s) 73, 1335
XspI CTAG 3 cut(s) 477, 486, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.