Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0001862

Physical Location & Seq

Genomic Coordinates Forward (+)

16307844 .. 16310249

Gene Structure 2406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g14920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGAAACCAAACTCAAGTCTGTAACAGCGACGCTCTTTCTGTGCTTCCTCTTGTTTCCGTTGGTTTTTTGCGAGTCCAACGATGGGTTGCTCCGGATTGGGCTCAAAAAGAGGAAATTGGATCAAAATAACAGGGTTGCTGCCCAGATTGATTCCAAGGAAGGAGAGTCTCTGAGAGCTGCGCTCCAAAAGTATCGTCTGGGTGGAAACTTGGCTGATTCTCAGGACATTGATATTGTGTCTCTCAAGAATTACATGGATGCTCAATACTTTGGCGAGATTGGTATTGGCACTCCCCCTCAGAAGTTCACTGTGATATTTGATACTGGTAGTGCAAATTTGTGGGTGCCTTCGTCTAAGTGTTATTTCTCGATTGCATGCTATTTACATCCAAAATACAAGTCAAGCAGTTCCAGCACCTACAACAAAAATGGTAAGCCTGCAGCCATCCAGTATGGAACTGGAGCTATTTCTGGGTTCTTCAGTGAAGATCATGTAACAGTTGGTGATCTTGTGGTTAAAGATCGATCAGGCAGTATGTTTCAGGAATTTATTGAGGCAACCAAGGAACCCGGCGTCACATTCGTGGTAGCCAAATTTGATGGCATACTTGGACTTGGATTTCAAGAGATTTCAGTTGGAAATGCTGTACCTGTGTGGTATAACATGGTCAATCAGGGTCTTCTGAAGGAACCAGTTTTCTCATTCTGGTTTAATCGTAATGCTGACGAAGAAGAAGGAGGTGAAATTGTTTTTGGTGGAGTGGATCCCAATCACTACAAGGGAGAGCACACGTATGTTCCTGTTACACAGAAAGGCTATTGGCAGTTTGACATGGGTGATGTTATGATTGATGGTCAAACTACTGGATTTTGTGCTAGTGGCTGTTCGGCTATTGCTGATTCTGGAACTTCTTTGTTGGTTGGCCCAACGACTATTATTACTGAACTCAATCATGCCATTGGAGCCTCTGGCATTGTAAGTCAAGAATGCAAGACTGTAGTTGCAGAATATGGGGAAACCATAATTGAGAGAATTTTAGCAAAGGATCAACCAGCGAAAATCTGCTCTCAGATTGGTTTATGCTCATTTGATGGGACTCATGGTGTTAGGTTAGACTCAATTTGCTTTCTGAGGCACATGGTAGAAATATGTTTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asp SapB_1 SapB_2

Protein Analysis

388

Amino Acids

42.28

Weight (kDa)

5.26

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11910 AT1G11910 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290 AT1G62290
fragaria_vesca	FvH4_3g23140 FvH4_3g23140 FvH4_6g42880 FvH4_6g42880
malus_domestica	MD00G1159300.v1.1 MD09G1111100.v1.1 MD11G1213600.v1.1 MD15G1413400.v1.1 MD17G1098900.v1.1 MD17G1282600.v1.1 MD17G1282700.v1.1
prunus_persica	Prupe.3G214900_v2.0.a1 Prupe.3G214900_v2.0.a1 Prupe.4G217700_v2.0.a1
pyrus_communis	pycom03g14920 pycom09g03360 pycom11g18820 pycom17g09430
rosa_chinensis	RchiOBHm_Chr2g0158811 RchiOBHm_Chr5g0040781
rosa_laevigata	RLG00000021115 RLG00000034001
rosa_multiflora	Rmu_sc0001579.1_g000001
rosa_roxburghii	Rroxscaffold_1G00039910 Rroxscaffold_2G00090980
rosa_rugosa	Rorug02G0472700 Rorug05G0187200 Rorug05G0187300
rosa_samantha	Rh2AG538500 Rh2BG551200 Rh2CG521800 Rh2DG561000 Rh5AG273000 Rh5BG278100 Rh5CG310100 Rh5DG286000
rosa_wichuraiana	Rw2G044570 Rw5G025670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AccIII	TCCGGA	1 cut(s)	93
AclWI	GGATC	4 cut(s)	129, 761, 774, 1056
AcsI	RAATTY	4 cut(s)	337, 548, 596, 1035
AcuI	CTGAAG	2 cut(s)	466, 707
AcyI	GRCGYC	1 cut(s)	576
AfaI	GTAC	1 cut(s)	651
AfiI	CCNNNNNNNGG	1 cut(s)	84
AflIII	ACRYGT	1 cut(s)	792
AgsI	TTSAA	1 cut(s)	626
AjuI	GAANNNNNNNTTGG	2 cut(s)	738, 770
AleI	CACNNNNGTG	1 cut(s)	584
AluBI	AGCT	2 cut(s)	179, 467
AluI	AGCT	2 cut(s)	179, 467
Alw21I	GWGCWC	1 cut(s)	792
Alw26I	GTCTC	2 cut(s)	174, 246
AlwI	GGATC	4 cut(s)	129, 761, 774, 1056
Aor13HI	TCCGGA	1 cut(s)	93
AoxI	GGCC	1 cut(s)	925
ApeKI	GCWGC	3 cut(s)	140, 179, 443
ApoI	RAATTY	4 cut(s)	337, 548, 596, 1035
ArsI	GACNNNNNNTTYG	4 cut(s)	181, 213, 386, 418
AspLEI	GCGC	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	926
AsuC2I	CCSGG	1 cut(s)	573
AsuHPI	GGTGA	3 cut(s)	518, 755, 851
BamHI	GGATCC	1 cut(s)	766
BanI	GGYRCC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	674
Bbv12I	GWGCWC	1 cut(s)	792
BbvI	GCAGC	3 cut(s)	127, 166, 455
BccI	CCATC	5 cut(s)	77, 455, 596, 848, 1088
BcnI	CCSGG	1 cut(s)	573
BcoDI	GTCTC	2 cut(s)	174, 246
BfaI	CTAG	1 cut(s)	879
BfmI	CTRYAG	2 cut(s)	441, 999
BisI	GCNGC	3 cut(s)	141, 180, 444
BlsI	GCNGC	3 cut(s)	142, 181, 445
Bme1390I	CCNGG	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	926
BmiI	GGNNCC	5 cut(s)	348, 570, 693, 768, 967
BmrFI	CCNGG	1 cut(s)	573
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	674
BplI	GAGNNNNNCTC	2 cut(s)	168, 200
BpmI	CTGGAG	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	230
BpuMI	CCSGG	1 cut(s)	573
Bsa29I	ATCGAT	1 cut(s)	526
BsaAI	YACGTR	1 cut(s)	795
BsaBI	GATNNNNATC	1 cut(s)	771
BsaHI	GRCGYC	1 cut(s)	576
BsaJI	CCNNGG	2 cut(s)	156, 564
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	1 cut(s)	84
Bse1I	ACTGG	5 cut(s)	331, 451, 466, 695, 871
Bse8I	GATNNNNATC	1 cut(s)	771
BseAI	TCCGGA	1 cut(s)	93
BseCI	ATCGAT	1 cut(s)	526
BseDI	CCNNGG	2 cut(s)	156, 564
BseGI	GGATG	3 cut(s)	265, 388, 447
BseJI	GATNNNNATC	1 cut(s)	771
BseLI	CCNNNNNNNGG	1 cut(s)	84
BseMII	CTCAG	5 cut(s)	164, 236, 314, 1085, 1124
BseNI	ACTGG	5 cut(s)	331, 451, 466, 695, 871
BseXI	GCAGC	3 cut(s)	127, 166, 455
BshFI	GGCC	1 cut(s)	927
BshNI	GGYRCC	1 cut(s)	346
BshVI	ATCGAT	1 cut(s)	526
BsiHKAI	GWGCWC	1 cut(s)	792
BsiSI	CCGG	2 cut(s)	94, 573
BslFI	GGGAC	1 cut(s)	1111
BslI	CCNNNNNNNGG	1 cut(s)	84
BsmAI	GTCTC	2 cut(s)	174, 246
BsmFI	GGGAC	1 cut(s)	1111
BsmI	GAATGC	1 cut(s)	995
BsnI	GGCC	1 cut(s)	927
Bsp1286I	GDGCHC	2 cut(s)	105, 792
Bsp13I	TCCGGA	1 cut(s)	93
Bsp143I	GATC	7 cut(s)	121, 490, 508, 523, 527, 766, 1048
BspANI	GGCC	1 cut(s)	927
BspCNI	CTCAG	5 cut(s)	165, 235, 313, 1084, 1125
BspDI	ATCGAT	1 cut(s)	526
BspEI	TCCGGA	1 cut(s)	93
BspLI	GGNNCC	5 cut(s)	348, 570, 693, 768, 967
BspMAI	CTGCAG	1 cut(s)	445
BspPI	GGATC	4 cut(s)	129, 761, 774, 1056
BspT107I	GGYRCC	1 cut(s)	346
BsrI	ACTGG	5 cut(s)	331, 451, 466, 695, 871
BssECI	CCNNGG	2 cut(s)	156, 564
BssMI	GATC	7 cut(s)	121, 490, 508, 523, 527, 766, 1048
BssNI	GRCGYC	1 cut(s)	576
BssT1I	CCWWGG	2 cut(s)	156, 564
Bst4CI	ACNGT	3 cut(s)	313, 502, 1000
BstACI	GRCGYC	1 cut(s)	576
BstBAI	YACGTR	1 cut(s)	795
BstC8I	GCNNGC	2 cut(s)	379, 441
BstDEI	CTNAG	6 cut(s)	173, 222, 300, 357, 1071, 1133
BstF5I	GGATG	3 cut(s)	265, 388, 447
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	7 cut(s)	124, 493, 511, 526, 530, 769, 1051
BstMAI	GTCTC	2 cut(s)	174, 246
BstMBI	GATC	7 cut(s)	121, 490, 508, 523, 527, 766, 1048
BstMWI	GCNNNNNNNGC	2 cut(s)	414, 965
BstNSI	RCATGY	1 cut(s)	381
BstSCI	CCNGG	1 cut(s)	571
BstSFI	CTRYAG	2 cut(s)	441, 999
BstV1I	GCAGC	3 cut(s)	127, 166, 455
BstV2I	GAAGAC	1 cut(s)	674
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
Bsu15I	ATCGAT	1 cut(s)	526
BsuRI	GGCC	1 cut(s)	927
BsuTUI	ATCGAT	1 cut(s)	526
BtsCI	GGATG	3 cut(s)	265, 388, 447
BtsIMutI	CAGTG	2 cut(s)	309, 490
Cac8I	GCNNGC	2 cut(s)	379, 441
CfoI	GCGC	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	926
ClaI	ATCGAT	1 cut(s)	526
CseI	GACGC	2 cut(s)	40, 565
Csp6I	GTAC	1 cut(s)	650
CviAII	CATG	8 cut(s)	256, 378, 494, 667, 835, 956, 1103, 1141
CviQI	GTAC	1 cut(s)	650
DdeI	CTNAG	6 cut(s)	173, 222, 300, 357, 1071, 1133
DpnI	GATC	7 cut(s)	123, 492, 510, 525, 529, 768, 1050
DpnII	GATC	7 cut(s)	121, 490, 508, 523, 527, 766, 1048
Eco130I	CCWWGG	2 cut(s)	156, 564
Eco24I	GRGCYC	1 cut(s)	105
Eco57I	CTGAAG	2 cut(s)	466, 707
EcoT14I	CCWWGG	2 cut(s)	156, 564
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	156, 564
FaeI	CATG	8 cut(s)	259, 381, 497, 670, 838, 959, 1106, 1144
FaqI	GGGAC	1 cut(s)	1111
FatI	CATG	8 cut(s)	255, 377, 493, 666, 834, 955, 1102, 1140
Fnu4HI	GCNGC	3 cut(s)	141, 180, 444
FokI	GGATG	3 cut(s)	272, 375, 434
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	3 cut(s)	141, 180, 444
FspBI	CTAG	1 cut(s)	879
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	3 cut(s)	141, 180, 444
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	927
HapII	CCGG	2 cut(s)	94, 573
HgaI	GACGC	2 cut(s)	40, 565
HhaI	GCGC	1 cut(s)	184
Hin1I	GRCGYC	1 cut(s)	576
Hin1II	CATG	8 cut(s)	259, 381, 497, 670, 838, 959, 1106, 1144
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HinfI	GANTC	7 cut(s)	74, 152, 167, 218, 902, 1099, 1118
HpaII	CCGG	2 cut(s)	94, 573
HphI	GGTGA	3 cut(s)	518, 755, 851
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188I	TCNGA	5 cut(s)	174, 303, 687, 1074, 1134
Hpy188III	TCNNGA	8 cut(s)	94, 224, 247, 370, 545, 626, 906, 986
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	4 cut(s)	155, 360, 682, 731
HpyCH4III	ACNGT	3 cut(s)	313, 502, 1000
HpyCH4IV	ACGT	1 cut(s)	794
HpyCH4V	TGCA	5 cut(s)	335, 377, 443, 993, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	414, 965
HpyF3I	CTNAG	6 cut(s)	173, 222, 300, 357, 1071, 1133
HpySE526I	ACGT	1 cut(s)	794
Hsp92I	GRCGYC	1 cut(s)	576
Hsp92II	CATG	8 cut(s)	259, 381, 497, 670, 838, 959, 1106, 1144
HspAI	GCGC	1 cut(s)	182
Kpn2I	TCCGGA	1 cut(s)	93
Kzo9I	GATC	7 cut(s)	121, 490, 508, 523, 527, 766, 1048
LmnI	GCTCC	4 cut(s)	96, 189, 464, 965
Lsp1109I	GCAGC	3 cut(s)	127, 166, 455
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	879
MaeII	ACGT	1 cut(s)	794
MaeIII	GTNAC	4 cut(s)	22, 496, 577, 805
MalI	GATC	7 cut(s)	123, 492, 510, 525, 529, 768, 1050
MboI	GATC	7 cut(s)	121, 490, 508, 523, 527, 766, 1048
MboII	GAAGA	5 cut(s)	472, 500, 674, 743, 746
MflI	RGATCY	1 cut(s)	766
MhlI	GDGCHC	2 cut(s)	105, 792
MluCI	AATT	9 cut(s)	116, 250, 337, 548, 596, 747, 1026, 1035, 1122
MlyI	GAGTC	4 cut(s)	83, 176, 1093, 1112
MmeI	TCCRAC	2 cut(s)	102, 619
MnlI	CCTC	7 cut(s)	59, 105, 309, 550, 734, 979, 1128
MroI	TCCGGA	1 cut(s)	93
MseI	TTAA	2 cut(s)	519, 714
MslI	CAYNNNNRTG	2 cut(s)	584, 795
MspI	CCGG	2 cut(s)	94, 573
MspR9I	CCNGG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	995
MwoI	GCNNNNNNNGC	2 cut(s)	414, 965
NciI	CCSGG	1 cut(s)	573
NdeII	GATC	7 cut(s)	121, 490, 508, 523, 527, 766, 1048
NlaIII	CATG	8 cut(s)	259, 381, 497, 670, 838, 959, 1106, 1144
NlaIV	GGNNCC	5 cut(s)	348, 570, 693, 768, 967
NmuCI	GTSAC	1 cut(s)	577
NspI	RCATGY	1 cut(s)	381
OliI	CACNNNNGTG	1 cut(s)	584
PaeI	GCATGC	1 cut(s)	381
PctI	GAATGC	1 cut(s)	995
PfeI	GAWTC	3 cut(s)	152, 218, 902
PkrI	GCNGC	3 cut(s)	142, 181, 445
PleI	GAGTC	4 cut(s)	82, 175, 1093, 1112
PpsI	GAGTC	4 cut(s)	82, 175, 1093, 1112
Ppu21I	YACGTR	1 cut(s)	795
PspN4I	GGNNCC	5 cut(s)	348, 570, 693, 768, 967
PspPI	GGNCC	1 cut(s)	926
PstI	CTGCAG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	766
RsaI	GTAC	1 cut(s)	651
RsaNI	GTAC	1 cut(s)	650
RseI	CAYNNNNRTG	2 cut(s)	584, 795
SaqAI	TTAA	2 cut(s)	519, 714
SatI	GCNGC	3 cut(s)	141, 180, 444
Sau3AI	GATC	7 cut(s)	121, 490, 508, 523, 527, 766, 1048
Sau96I	GGNCC	1 cut(s)	926
SchI	GAGTC	4 cut(s)	83, 176, 1093, 1112
ScrFI	CCNGG	1 cut(s)	573
SduI	GDGCHC	2 cut(s)	105, 792
SetI	ASST	7 cut(s)	181, 422, 469, 655, 745, 797, 1115
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	2 cut(s)	441, 999
SmiMI	CAYNNNNRTG	2 cut(s)	584, 795
SmlI	CTYRAG	2 cut(s)	14, 245
SmoI	CTYRAG	2 cut(s)	14, 245
SphI	GCATGC	1 cut(s)	381
Sse9I	AATT	9 cut(s)	116, 250, 337, 548, 596, 747, 1026, 1035, 1122
SspMI	CTAG	1 cut(s)	879
StyD4I	CCNGG	1 cut(s)	571
StyI	CCWWGG	2 cut(s)	156, 564
TaaI	ACNGT	3 cut(s)	313, 502, 1000
TaiI	ACGT	1 cut(s)	797
TaqI	TCGA	2 cut(s)	371, 526
TasI	AATT	9 cut(s)	116, 250, 337, 548, 596, 747, 1026, 1035, 1122
TfiI	GAWTC	3 cut(s)	152, 218, 902
Tru1I	TTAA	2 cut(s)	519, 714
Tru9I	TTAA	2 cut(s)	519, 714
TscAI	CASTG	2 cut(s)	316, 490
TseFI	GTSAC	1 cut(s)	577
TseI	GCWGC	3 cut(s)	140, 179, 443
Tsp45I	GTSAC	1 cut(s)	577
TspGWI	ACGGA	1 cut(s)	48
TspRI	CASTG	2 cut(s)	316, 490
XapI	RAATTY	4 cut(s)	337, 548, 596, 1035
XceI	RCATGY	1 cut(s)	381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XspI	CTAG	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.