Rorug05G0187300

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
18193046 .. 18194793
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0187300.1

Sequence Viewer

Length: 1665 bp
ATGCAGTGGGATGGCTACCCATTGAATTCTCTGCCATCAAAGTTTTGTCCAGAAAATCTTGTTGAGCTTTGTATGTACAAAAGCCGACTTCAGCGACTTTGGAATAAAGGCCTGAAGATCAATCTTGGGAGCTTAAAACATATCGATCTTAGTTACTCCGAGCACCTGGCTGATGTTTCAGCTCTGATTGAGAGTCCAAATCTCGAGAGCATTTGGCTTGTAGGTTGTACAAGTTTGGTTCAACTTCCTTCATCTTTTCAGCATCTTGCCAAGCTTACGAATCTCTGTCTGGGTTACTGCTACAATCTCAAAATTCTTCCAGAGATGCCAGGCAATCTGGAAGACTTATCCTTGTCCGGGACTGCAATAGAAGAATTGCCTTCATCAATTTGGTGTCTTGAGAAGCTCCGTTATTTGGGTCTTTATTCATGTAAAGAGCTTAAGAATATTCCAAGCAGCACTTGTAGGCTGATTTCGCTCCAATATCTCAATCTACATGGCTGCCTCTCTCTTGAGTCTTTGCCGGTCGAGCTACCTTTTTTGCTGACGGAACTGTGCTTGAGCGATTGCAAGAGTCTTGGGTCTTTGCCTGTCAAGCTGCCTTCTGGGCTGACGGAACTGTACTTGAGCAATTGCAGGAGGCTTGGGTCTTTACCTGCCCAGCTACCTTCTGGGCTGCAAGAGCTGTACTTGAGAGATTGCAAGAGTCTTGGGTCTTTGCCTGTCGAGCTCCCTCGTAGGCTGTGGAAACTGGACTTGAGCAATTGCAGGAGTCTTGGGTCATTGCCTGTCGAGCTCCCTGCTGGGCTGAACGAGCTGTACTTGAGAAATTGCAAGCGTCTTGGGTCTTTACCAAAGCTGCCATGGGTTCTACACCAGTTGGATGCGTATGGCTGCACGTCACTAGAGACAGTCTCAAGTTCGATGAGGACTGTAACCATACAAGGTTGGGATCAATTTGTCAACAAATTTAAAAGAATCTGGCCTAAGGGTGAAGAGGAACATGTATTTCTAAATTGCATGAAATTGGATCAGAGTGCACGGAGCAACATAATGGCTGATGCACAGATTAGAGTTATGCGATTTGCAACTGCATTTCGCCAATCAAAATCGTTTAAAATTGTTTGTCCGGGAAATGAAATTCCAAAGTGGGTGAGGTATCAAAGTGAGGGATGTTCAATAAATATCAAGCTTCCTCCTCATTCGTTTCGTCAAGGCTTCCTCGGTTACGCTCTATGCATTGTGGTTGCATTCAACAACTATACGCCACCCGCTATTGGGGGTTGCTACTTTAGTTGTGATATCCATTACAGAATTAACAATGGTCACGAAGATTGTTGGGACTCCCTCATCGGTACAAGGCTACTAAATATTCCCATCTATTCAGATCATGTGTTCGTATGGTATTTCCACCCTGAATATGCTGAATCATACAGTGCAATCAATCGCGAGGATTGGGTAAAACCATCCGAGGCCTCTTTTGACTTCATGTTGAACCAATATACTTATCAGGACTCCTTTTGTGCAAAAAAAATTCCAATTCCCTTTGACCTGTCCACTGTGAGGGTGAAAAGGTGTGGAGTCTCCTTGCTGTATGCCCAAGAGATTGAAAAATTACTTGGAGGCATTGATGAAGATGAAAGCAGTAGAAGAAGAAGAAGATAG

Protein Analysis

554

Amino Acids

63.05

Weight (kDa)

8.06

Isoelectric Point (pI)

61.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 376 - 537 2.9e-18 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 664
AccII CGCG 1 cut(s) 1449
AciI CCGC 1 cut(s) 1272
AclWI GGATC 2 cut(s) 960, 1038
AcsI RAATTY 5 cut(s) 25, 312, 968, 1140, 1533
AcuI CTGAAG 2 cut(s) 74, 134
AfaI GTAC 6 cut(s) 77, 229, 623, 689, 821, 1357
AfiI CCNNNNNNNGG 5 cut(s) 357, 415, 1277, 1278, 1563
AflII CTTAAG 1 cut(s) 440
AflIII ACRYGT 1 cut(s) 1003
AgsI TTSAA 6 cut(s) 25, 242, 1179, 1255, 1495, 1610
AjiI CACGTC 1 cut(s) 900
AjnI CCWGG 2 cut(s) 165, 328
AjuI GAANNNNNNNTTGG 2 cut(s) 1602, 1634
Alw21I GWGCWC 4 cut(s) 165, 732, 798, 1042
Alw26I GTCTC 3 cut(s) 902, 919, 1588
Alw44I GTGCAC 1 cut(s) 1038
AlwI GGATC 2 cut(s) 960, 1038
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 3 cut(s) 109, 983, 1473
ApaLI GTGCAC 1 cut(s) 1038
ApeKI GCWGC 6 cut(s) 456, 501, 598, 676, 859, 894
ApoI RAATTY 5 cut(s) 25, 312, 968, 1140, 1533
AsuC2I CCSGG 2 cut(s) 358, 1131
AsuHPI GGTGA 3 cut(s) 1004, 1165, 1579
AvaI CYCGRG 1 cut(s) 203
AxyI CCTNAGG 1 cut(s) 987
BaeGI GKGCMC 1 cut(s) 1042
BanII GRGCYC 2 cut(s) 732, 798
BbsI GAAGAC 1 cut(s) 348
Bbv12I GWGCWC 4 cut(s) 165, 732, 798, 1042
BbvI GCAGC 6 cut(s) 468, 488, 585, 663, 846, 881
BccI CCATC 4 cut(s) 5, 43, 1385, 1474
BcgI CGANNNNNNTGC 2 cut(s) 782, 816
BciT130I CCWGG 2 cut(s) 167, 330
BcnI CCSGG 2 cut(s) 358, 1131
BcoDI GTCTC 3 cut(s) 902, 919, 1588
BfaI CTAG 1 cut(s) 905
BfrI CTTAAG 1 cut(s) 440
BfuAI ACCTGC 1 cut(s) 664
BglI GCCNNNNNGGC 1 cut(s) 607
BisI GCNGC 6 cut(s) 457, 502, 599, 677, 860, 895
BlsI GCNGC 6 cut(s) 458, 503, 600, 678, 861, 896
Bme1390I CCNGG 4 cut(s) 167, 330, 358, 1131
BmeT110I CYCGRG 1 cut(s) 203
BmgBI CACGTC 1 cut(s) 900
BmrFI CCNGG 4 cut(s) 167, 330, 358, 1131
BmsI GCATC 4 cut(s) 271, 315, 874, 1051
BpiI GAAGAC 1 cut(s) 348
BplI GAGNNNNNCTC 2 cut(s) 899, 931
BpuEI CTTGAG 8 cut(s) 419, 533, 580, 646, 712, 778, 844, 901
BpuMI CCSGG 2 cut(s) 358, 1131
Bsa29I ATCGAT 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 863, 1222, 1470
Bsc4I CCNNNNNNNGG 5 cut(s) 357, 415, 1277, 1278, 1563
Bse118I RCCGGY 1 cut(s) 523
Bse1I ACTGG 2 cut(s) 756, 877
Bse21I CCTNAGG 1 cut(s) 987
Bse3DI GCAATG 1 cut(s) 782
BseBI CCWGG 2 cut(s) 167, 330
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 863, 1222, 1470
BseGI GGATG 4 cut(s) 16, 889, 1178, 1466
BseLI CCNNNNNNNGG 5 cut(s) 357, 415, 1277, 1278, 1563
BseMI GCAATG 1 cut(s) 782
BseNI ACTGG 2 cut(s) 756, 877
BseRI GAGGAG 1 cut(s) 1188
BseSI GKGCMC 1 cut(s) 1042
BseXI GCAGC 6 cut(s) 468, 488, 585, 663, 846, 881
BseYI CCCAGC 2 cut(s) 660, 803
BsgI GTGCAG 1 cut(s) 880
Bsh1236I CGCG 1 cut(s) 1449
Bsh1285I CGRYCG 1 cut(s) 528
BshFI GGCC 3 cut(s) 111, 985, 1475
BshVI ATCGAT 1 cut(s) 144
BsiEI CGRYCG 1 cut(s) 528
BsiHKAI GWGCWC 4 cut(s) 165, 732, 798, 1042
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 3 cut(s) 357, 524, 1130
BslFI GGGAC 2 cut(s) 373, 1355
BslI CCNNNNNNNGG 5 cut(s) 357, 415, 1277, 1278, 1563
BsmAI GTCTC 3 cut(s) 902, 919, 1588
BsmFI GGGAC 2 cut(s) 373, 1355
BsmI GAATGC 1 cut(s) 1250
BsnI GGCC 3 cut(s) 111, 985, 1475
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 4 cut(s) 165, 732, 798, 1042
Bsp1407I TGTACA 2 cut(s) 75, 227
Bsp143I GATC 5 cut(s) 117, 145, 952, 1030, 1387
Bsp19I CCATGG 1 cut(s) 863
Bsp68I TCGCGA 1 cut(s) 1449
BspACI CCGC 1 cut(s) 1272
BspANI GGCC 3 cut(s) 111, 985, 1475
BspDI ATCGAT 1 cut(s) 144
BspFNI CGCG 1 cut(s) 1449
BspMI ACCTGC 1 cut(s) 664
BspPI GGATC 2 cut(s) 960, 1038
BspTI CTTAAG 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 782
BsrFI RCCGGY 1 cut(s) 523
BsrGI TGTACA 2 cut(s) 75, 227
BsrI ACTGG 2 cut(s) 756, 877
BssAI RCCGGY 1 cut(s) 523
BssECI CCNNGG 3 cut(s) 863, 1222, 1470
BssMI GATC 5 cut(s) 117, 145, 952, 1030, 1387
BssT1I CCWWGG 1 cut(s) 863
Bst2UI CCWGG 2 cut(s) 167, 330
Bst4CI ACNGT 6 cut(s) 555, 621, 913, 934, 1436, 1561
Bst6I CTCTTC 1 cut(s) 990
BstAFI CTTAAG 1 cut(s) 440
BstAUI TGTACA 2 cut(s) 75, 227
BstC8I GCNNGC 1 cut(s) 836
BstDEI CTNAG 2 cut(s) 149, 987
BstDSI CCRYGG 1 cut(s) 863
BstF5I GGATG 4 cut(s) 16, 889, 1178, 1466
BstFNI CGCG 1 cut(s) 1449
BstKTI GATC 5 cut(s) 120, 148, 955, 1033, 1390
BstMAI GTCTC 3 cut(s) 902, 919, 1588
BstMBI GATC 5 cut(s) 117, 145, 952, 1030, 1387
BstMCI CGRYCG 1 cut(s) 528
BstMWI GCNNNNNNNGC 8 cut(s) 475, 529, 595, 607, 682, 727, 793, 814
BstNI CCWGG 2 cut(s) 167, 330
BstNSI RCATGY 1 cut(s) 1007
BstSCI CCNGG 4 cut(s) 165, 328, 356, 1129
BstSLI GKGCMC 1 cut(s) 1042
BstUI CGCG 1 cut(s) 1449
BstV1I GCAGC 6 cut(s) 468, 488, 585, 663, 846, 881
BstV2I GAAGAC 1 cut(s) 348
Bsu15I ATCGAT 1 cut(s) 144
Bsu36I CCTNAGG 1 cut(s) 987
BsuRI GGCC 3 cut(s) 111, 985, 1475
BsuTUI ATCGAT 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 863
BtrI CACGTC 1 cut(s) 900
BtsCI GGATG 4 cut(s) 16, 889, 1178, 1466
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 3 cut(s) 11, 1441, 1557
BtuMI TCGCGA 1 cut(s) 1449
BveI ACCTGC 1 cut(s) 664
Cac8I GCNNGC 1 cut(s) 836
Cfr10I RCCGGY 1 cut(s) 523
ClaI ATCGAT 1 cut(s) 144
CseI GACGC 1 cut(s) 827
Csp6I GTAC 6 cut(s) 76, 228, 622, 688, 820, 1356
CviAII CATG 7 cut(s) 429, 497, 864, 1004, 1021, 1391, 1489
CviQI GTAC 6 cut(s) 76, 228, 622, 688, 820, 1356
DdeI CTNAG 2 cut(s) 149, 987
DpnI GATC 5 cut(s) 119, 147, 954, 1032, 1389
DpnII GATC 5 cut(s) 117, 145, 952, 1030, 1387
DraI TTTAAA 2 cut(s) 973, 1117
Eam1104I CTCTTC 1 cut(s) 990
EarI CTCTTC 1 cut(s) 990
Ecl136II GAGCTC 2 cut(s) 730, 796
Eco130I CCWWGG 1 cut(s) 863
Eco147I AGGCCT 2 cut(s) 111, 1475
Eco24I GRGCYC 2 cut(s) 732, 798
Eco32I GATATC 1 cut(s) 1303
Eco53kI GAGCTC 2 cut(s) 730, 796
Eco57I CTGAAG 2 cut(s) 74, 134
Eco81I CCTNAGG 1 cut(s) 987
Eco88I CYCGRG 1 cut(s) 203
EcoICRI GAGCTC 2 cut(s) 730, 796
EcoRI GAATTC 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 165, 328
EcoRV GATATC 1 cut(s) 1303
EcoT14I CCWWGG 1 cut(s) 863
EcoT22I ATGCAT 1 cut(s) 1241
EcoT38I GRGCYC 2 cut(s) 732, 798
ErhI CCWWGG 1 cut(s) 863
FaeI CATG 7 cut(s) 432, 500, 867, 1007, 1024, 1394, 1492
FalI AAGNNNNNCTT 2 cut(s) 445, 477
FaqI GGGAC 2 cut(s) 373, 1355
FatI CATG 7 cut(s) 428, 496, 863, 1003, 1020, 1390, 1488
FauI CCCGC 1 cut(s) 1279
Fnu4HI GCNGC 6 cut(s) 457, 502, 599, 677, 860, 895
FokI GGATG 4 cut(s) 23, 896, 1185, 1453
FriOI GRGCYC 2 cut(s) 732, 798
Fsp4HI GCNGC 6 cut(s) 457, 502, 599, 677, 860, 895
FspBI CTAG 1 cut(s) 905
GluI GCNGC 6 cut(s) 457, 502, 599, 677, 860, 895
GsaI CCCAGC 2 cut(s) 664, 807
HaeIII GGCC 3 cut(s) 111, 985, 1475
HapII CCGG 3 cut(s) 357, 524, 1130
HgaI GACGC 1 cut(s) 827
Hin1II CATG 7 cut(s) 432, 500, 867, 1007, 1024, 1394, 1492
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HindIII AAGCTT 2 cut(s) 272, 1190
HpaII CCGG 3 cut(s) 357, 524, 1130
HphI GGTGA 3 cut(s) 1004, 1165, 1579
Hpy166II GTNNAC 3 cut(s) 964, 1040, 1557
Hpy188I TCNGA 5 cut(s) 160, 186, 1035, 1387, 1471
Hpy8I GTNNAC 3 cut(s) 964, 1040, 1557
HpyAV CCTTC 4 cut(s) 258, 390, 612, 678
HpyCH4III ACNGT 6 cut(s) 555, 621, 913, 934, 1436, 1561
HpyCH4IV ACGT 1 cut(s) 899
HpyF10VI GCNNNNNNNGC 8 cut(s) 475, 529, 595, 607, 682, 727, 793, 814
HpyF3I CTNAG 2 cut(s) 149, 987
HpySE526I ACGT 1 cut(s) 899
Hsp92II CATG 7 cut(s) 432, 500, 867, 1007, 1024, 1394, 1492
Kzo9I GATC 5 cut(s) 117, 145, 952, 1030, 1387
LmnI GCTCC 6 cut(s) 129, 411, 483, 735, 801, 1044
Lsp1109I GCAGC 6 cut(s) 468, 488, 585, 663, 846, 881
LweI GCATC 4 cut(s) 271, 315, 874, 1051
MaeI CTAG 1 cut(s) 905
MaeII ACGT 1 cut(s) 899
MaeIII GTNAC 6 cut(s) 152, 293, 900, 934, 1226, 1325
MalI GATC 5 cut(s) 119, 147, 954, 1032, 1389
MboI GATC 5 cut(s) 117, 145, 952, 1030, 1387
MboII GAAGA 9 cut(s) 127, 308, 353, 383, 1007, 1343, 1646, 1662, 1665
MfeI CAATTG 2 cut(s) 631, 763
MhlI GDGCHC 4 cut(s) 165, 732, 798, 1042
MlyI GAGTC 8 cut(s) 202, 524, 583, 715, 781, 1337, 1508, 1590
MmeI TCCRAC 1 cut(s) 861
Mph1103I ATGCAT 1 cut(s) 1241
MseI TTAA 5 cut(s) 134, 441, 972, 1116, 1317
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 3 cut(s) 357, 524, 1130
MspR9I CCNGG 4 cut(s) 167, 330, 358, 1131
MunI CAATTG 2 cut(s) 631, 763
Mva1269I GAATGC 1 cut(s) 1250
MvaI CCWGG 2 cut(s) 167, 330
MvnI CGCG 1 cut(s) 1449
MwoI GCNNNNNNNGC 8 cut(s) 475, 529, 595, 607, 682, 727, 793, 814
NciI CCSGG 2 cut(s) 358, 1131
NcoI CCATGG 1 cut(s) 863
NdeII GATC 5 cut(s) 117, 145, 952, 1030, 1387
NlaIII CATG 7 cut(s) 432, 500, 867, 1007, 1024, 1394, 1492
NmuCI GTSAC 2 cut(s) 900, 1325
NruI TCGCGA 1 cut(s) 1449
NsiI ATGCAT 1 cut(s) 1241
NspI RCATGY 1 cut(s) 1007
PaeR7I CTCGAG 1 cut(s) 203
PceI AGGCCT 2 cut(s) 111, 1475
PciI ACATGT 1 cut(s) 1003
PctI GAATGC 1 cut(s) 1250
PfeI GAWTC 3 cut(s) 280, 978, 1427
PfoI TCCNGGA 2 cut(s) 356, 1129
PkrI GCNGC 6 cut(s) 458, 503, 600, 678, 861, 896
PleI GAGTC 8 cut(s) 201, 523, 582, 714, 780, 1337, 1508, 1589
PpsI GAGTC 8 cut(s) 201, 523, 582, 714, 780, 1337, 1508, 1589
PscI ACATGT 1 cut(s) 1003
Psp124BI GAGCTC 2 cut(s) 732, 798
Psp6I CCWGG 2 cut(s) 165, 328
PspFI CCCAGC 2 cut(s) 660, 803
PspGI CCWGG 2 cut(s) 165, 328
PsrI GAACNNNNNNTAC 2 cut(s) 803, 835
RruI TCGCGA 1 cut(s) 1449
RsaI GTAC 6 cut(s) 77, 229, 623, 689, 821, 1357
RsaNI GTAC 6 cut(s) 76, 228, 622, 688, 820, 1356
SacI GAGCTC 2 cut(s) 732, 798
SaqAI TTAA 5 cut(s) 134, 441, 972, 1116, 1317
SatI GCNGC 6 cut(s) 457, 502, 599, 677, 860, 895
Sau3AI GATC 5 cut(s) 117, 145, 952, 1030, 1387
SchI GAGTC 8 cut(s) 202, 524, 583, 715, 781, 1337, 1508, 1590
ScrFI CCNGG 4 cut(s) 167, 330, 358, 1131
SduI GDGCHC 4 cut(s) 165, 732, 798, 1042
SfaNI GCATC 4 cut(s) 271, 315, 874, 1051
Sfr274I CTCGAG 1 cut(s) 203
SlaI CTCGAG 1 cut(s) 203
SseBI AGGCCT 2 cut(s) 111, 1475
SsiI CCGC 1 cut(s) 1272
SspI AATATT 2 cut(s) 448, 1372
SspMI CTAG 1 cut(s) 905
SstI GAGCTC 2 cut(s) 732, 798
StuI AGGCCT 2 cut(s) 111, 1475
StyD4I CCNGG 4 cut(s) 165, 328, 356, 1129
StyI CCWWGG 1 cut(s) 863
TaaI ACNGT 6 cut(s) 555, 621, 913, 934, 1436, 1561
TaiI ACGT 1 cut(s) 902
TaqI TCGA 6 cut(s) 144, 204, 528, 726, 792, 923
TatI WGTACW 5 cut(s) 75, 227, 621, 687, 819
TfiI GAWTC 3 cut(s) 280, 978, 1427
Tru1I TTAA 5 cut(s) 134, 441, 972, 1116, 1317
Tru9I TTAA 5 cut(s) 134, 441, 972, 1116, 1317
TscAI CASTG 2 cut(s) 1441, 1564
TseFI GTSAC 2 cut(s) 900, 1325
TseI GCWGC 6 cut(s) 456, 501, 598, 676, 859, 894
Tsp45I GTSAC 2 cut(s) 900, 1325
TspDTI ATGAA 8 cut(s) 240, 372, 417, 1037, 1152, 1477, 1647, 1653
TspGWI ACGGA 4 cut(s) 398, 563, 629, 1057
TspRI CASTG 2 cut(s) 1441, 1564
Vha464I CTTAAG 1 cut(s) 440
VneI GTGCAC 1 cut(s) 1038
XapI RAATTY 5 cut(s) 25, 312, 968, 1140, 1533
XceI RCATGY 1 cut(s) 1007
XcmI CCANNNNNNNNNTGG 2 cut(s) 668, 861
XhoI CTCGAG 1 cut(s) 203
XspI CTAG 1 cut(s) 905
Zsp2I ATGCAT 1 cut(s) 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.