Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

23719783 .. 23721774

Gene Structure 1992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G63910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGGTCATCACTCATGCTGCAACCAGCAAAAGGTGAAGAGAGGGCTTTGGTCACCGGAAGAAGATGAGAAGCTTATTAGATATATCACAACTCATGGCTATGGATGTTGGAGTGAAGTCCCTGAAAAAGCAGGGCTTCAAAGATGTGGAAAAAGTTGTAGATTGCGATGGATAAACTATCTTCGACCTGATATCAGGAGAGGAAGGTTCTCTCCAGAAGAAGAGAAATTGATCATAAGCCTTCATGGAGTTGTGGGAAACAGGTGGGCTCATATAGCTAGTCATTTACCGGGAAGAACAGATAACGAGATTAAAAACTATTGGAATTCATGGATTAAGAAAAAGATACGAAAACCGCACCATCATTACAGTCGTCATCAACCGTCAGTAACTACTGTGACATTGAATGCGGACACTACATCGATTGCCACTACCATCGAGGCCTCTACCACCACAACATCGACTATCGATAACTTACATTTTGACGGTTTCACTGATTCTCCTAACCAATTAAATTTCACCAATGATCAAGAAACTAATATAAAGATTCAAGAAACTTTTTTCTCCCATAAACCTCCTCTCTTCATGGTAGACACAACACTTCCTATCCTAGAAGGAATGTTCTCTGAAAACATCATCACAAACAATAACAAGAACAATGATCATGATGACACGCAAAGAGGAGGAAGAGAAAATGTTTGTGAACAAGCATTTCTAACAACTAACACGGAAGAATGGGATATGAATCTTCGTCAGCAAGAGCCGTTTCAAGTTCCTACACTGGCGTCACATGTGTTCAACAACTCTTCCAATTCAAATATTGACACGGTTATAAGTTATAATCTACCGGCGCTAATAGAGGGAAATGTCGATAACATCGTCCATAATGAAAACAGCAATGTCCAAGATGGAGAAATGGCGTCCACATTCGAATGTTTAAAGAGGCAAGAACTAAGCTATGATCAATGGGACGATTCACAACAATGCTCTAACTTTTTCTTTTGGGACAACCTTAATATAAACGTGGAAGGTTCATCTCTTGTTGGAAACCAAGACCCATCAATGAATTTGGGATCATCTGCCTTATCTTCTTCTTTCCCTTCTTCGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

370

Amino Acids

42.26

Weight (kDa)

5.5

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	8.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	6.8e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	7.1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 118	2.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	833, 840
AccI	GTMKAC	1 cut(s)	591
AciI	CCGC	2 cut(s)	356, 410
AclWI	GGATC	1 cut(s)	1081
AcsI	RAATTY	3 cut(s)	325, 514, 1066
AcyI	GRCGYC	2 cut(s)	785, 920
AfiI	CCNNNNNNNGG	1 cut(s)	31
AflIII	ACRYGT	1 cut(s)	790
AgsI	TTSAA	6 cut(s)	140, 406, 551, 770, 799, 816
AluBI	AGCT	3 cut(s)	73, 278, 957
AluI	AGCT	3 cut(s)	73, 278, 957
AlwI	GGATC	1 cut(s)	1081
AoxI	GGCC	1 cut(s)	441
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	3 cut(s)	325, 514, 1066
AspLEI	GCGC	1 cut(s)	853
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	3 cut(s)	45, 46, 511
AsuII	TTCGAA	1 cut(s)	930
BanII	GRGCYC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	5 cut(s)	162, 369, 443, 902, 1066
BceAI	ACGGC	1 cut(s)	748
BclI	TGATCA	4 cut(s)	231, 526, 661, 961
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	2 cut(s)	279, 611
BfoI	RGCGCY	1 cut(s)	854
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	1 cut(s)	291
BmrFI	CCNGG	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	198
Bpu14I	TTCGAA	1 cut(s)	930
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	2 cut(s)	422, 468
BsaBI	GATNNNNATC	1 cut(s)	744
BsaHI	GRCGYC	2 cut(s)	785, 920
BsaWI	WCCGGW	1 cut(s)	55
BsaXI	ACNNNNNCTCC	2 cut(s)	484, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	31
Bse118I	RCCGGY	1 cut(s)	847
Bse1I	ACTGG	1 cut(s)	786
Bse3DI	GCAATG	1 cut(s)	904
Bse8I	GATNNNNATC	1 cut(s)	744
BseCI	ATCGAT	2 cut(s)	422, 468
BseGI	GGATG	1 cut(s)	110
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	1 cut(s)	31
BseMI	GCAATG	1 cut(s)	904
BseNI	ACTGG	1 cut(s)	786
BseRI	GAGGAG	2 cut(s)	567, 696
BseXI	GCAGC	1 cut(s)	5
BshFI	GGCC	1 cut(s)	443
BshVI	ATCGAT	2 cut(s)	422, 468
BsiSI	CCGG	3 cut(s)	56, 290, 848
BslFI	GGGAC	3 cut(s)	104, 983, 1019
BslI	CCNNNNNNNGG	1 cut(s)	31
BsmFI	GGGAC	3 cut(s)	104, 983, 1019
BsmI	GAATGC	1 cut(s)	412
BsnI	GGCC	1 cut(s)	443
Bsp119I	TTCGAA	1 cut(s)	930
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	5 cut(s)	231, 526, 661, 961, 1073
BspACI	CCGC	2 cut(s)	356, 410
BspANI	GGCC	1 cut(s)	443
BspDI	ATCGAT	2 cut(s)	422, 468
BspHI	TCATGA	1 cut(s)	664
BspPI	GGATC	1 cut(s)	1081
BspT104I	TTCGAA	1 cut(s)	930
BsrDI	GCAATG	1 cut(s)	904
BsrFI	RCCGGY	1 cut(s)	847
BsrI	ACTGG	1 cut(s)	786
BssAI	RCCGGY	1 cut(s)	847
BssMI	GATC	5 cut(s)	231, 526, 661, 961, 1073
BssNI	GRCGYC	2 cut(s)	785, 920
Bst4CI	ACNGT	5 cut(s)	371, 384, 397, 488, 829
Bst6I	CTCTTC	5 cut(s)	32, 216, 587, 682, 811
BstACI	GRCGYC	2 cut(s)	785, 920
BstBI	TTCGAA	1 cut(s)	930
BstDEI	CTNAG	1 cut(s)	953
BstEII	GGTNACC	1 cut(s)	51
BstF5I	GGATG	1 cut(s)	110
BstH2I	RGCGCY	1 cut(s)	854
BstHHI	GCGC	1 cut(s)	853
BstKTI	GATC	5 cut(s)	234, 529, 664, 964, 1076
BstMBI	GATC	5 cut(s)	231, 526, 661, 961, 1073
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNSI	RCATGY	1 cut(s)	794
BstPI	GGTNACC	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	289
BstV1I	GCAGC	1 cut(s)	5
Bsu15I	ATCGAT	2 cut(s)	422, 468
BsuRI	GGCC	1 cut(s)	443
BsuTUI	ATCGAT	2 cut(s)	422, 468
BtgZI	GCGATG	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	110
BtsIMutI	CAGTG	2 cut(s)	492, 779
CciI	TCATGA	1 cut(s)	664
CfoI	GCGC	1 cut(s)	853
Cfr10I	RCCGGY	1 cut(s)	847
ClaI	ATCGAT	2 cut(s)	422, 468
CseI	GACGC	2 cut(s)	774, 909
CviAII	CATG	7 cut(s)	15, 95, 245, 330, 586, 665, 791
DdeI	CTNAG	1 cut(s)	953
DpnI	GATC	5 cut(s)	233, 528, 663, 963, 1075
DpnII	GATC	5 cut(s)	231, 526, 661, 961, 1073
DraI	TTTAAA	1 cut(s)	939
Eam1104I	CTCTTC	5 cut(s)	32, 216, 587, 682, 811
EarI	CTCTTC	5 cut(s)	32, 216, 587, 682, 811
Eco147I	AGGCCT	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	271
Eco32I	GATATC	1 cut(s)	193
Eco91I	GGTNACC	1 cut(s)	51
EcoO65I	GGTNACC	1 cut(s)	51
EcoRI	GAATTC	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	193
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	7 cut(s)	18, 98, 248, 333, 589, 668, 794
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	3 cut(s)	104, 983, 1019
FatI	CATG	7 cut(s)	14, 94, 244, 329, 585, 664, 790
FbaI	TGATCA	4 cut(s)	231, 526, 661, 961
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	1 cut(s)	117
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	19
FspBI	CTAG	2 cut(s)	279, 611
GlaI	GCGC	1 cut(s)	852
GluI	GCNGC	1 cut(s)	19
GsuI	CTGGAG	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	854
HaeIII	GGCC	1 cut(s)	443
HapII	CCGG	3 cut(s)	56, 290, 848
HgaI	GACGC	2 cut(s)	774, 909
HhaI	GCGC	1 cut(s)	853
Hin1I	GRCGYC	2 cut(s)	785, 920
Hin1II	CATG	7 cut(s)	18, 98, 248, 333, 589, 668, 794
Hin6I	GCGC	1 cut(s)	851
HinP1I	GCGC	1 cut(s)	851
HindIII	AAGCTT	1 cut(s)	71
HinfI	GANTC	4 cut(s)	497, 547, 745, 974
HpaII	CCGG	3 cut(s)	56, 290, 848
HphI	GGTGA	3 cut(s)	45, 46, 511
Hpy166II	GTNNAC	3 cut(s)	592, 704, 924
Hpy188I	TCNGA	1 cut(s)	628
Hpy188III	TCNNGA	5 cut(s)	196, 215, 530, 551, 665
Hpy8I	GTNNAC	3 cut(s)	592, 704, 924
HpyAV	CCTTC	5 cut(s)	198, 251, 608, 1022, 1110
HpyCH4III	ACNGT	5 cut(s)	371, 384, 397, 488, 829
HpyCH4IV	ACGT	1 cut(s)	1023
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	953
HpySE526I	ACGT	1 cut(s)	1023
Hsp92I	GRCGYC	2 cut(s)	785, 920
Hsp92II	CATG	7 cut(s)	18, 98, 248, 333, 589, 668, 794
HspAI	GCGC	1 cut(s)	851
Ksp22I	TGATCA	4 cut(s)	231, 526, 661, 961
Kzo9I	GATC	5 cut(s)	231, 526, 661, 961, 1073
Lsp1109I	GCAGC	1 cut(s)	5
MaeI	CTAG	2 cut(s)	279, 611
MaeII	ACGT	1 cut(s)	1023
MaeIII	GTNAC	4 cut(s)	51, 388, 397, 786
MalI	GATC	5 cut(s)	233, 528, 663, 963, 1075
MboI	GATC	5 cut(s)	231, 526, 661, 961, 1073
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	6 cut(s)	227, 325, 509, 514, 811, 1066
MmeI	TCCRAC	2 cut(s)	89, 1024
MseI	TTAA	6 cut(s)	312, 336, 512, 938, 1014, 1111
MslI	CAYNNNNRTG	3 cut(s)	99, 931, 982
MspI	CCGG	3 cut(s)	56, 290, 848
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	412
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	291
NdeII	GATC	5 cut(s)	231, 526, 661, 961, 1073
NlaIII	CATG	7 cut(s)	18, 98, 248, 333, 589, 668, 794
NmuCI	GTSAC	3 cut(s)	51, 397, 786
NspI	RCATGY	1 cut(s)	794
NspV	TTCGAA	1 cut(s)	930
PagI	TCATGA	1 cut(s)	664
PceI	AGGCCT	1 cut(s)	443
PciI	ACATGT	1 cut(s)	790
PcsI	WCGNNNNNNNCGW	1 cut(s)	876
PctI	GAATGC	1 cut(s)	412
PfeI	GAWTC	4 cut(s)	497, 547, 745, 974
PkrI	GCNGC	1 cut(s)	20
PscI	ACATGT	1 cut(s)	790
PsiI	TTATAA	2 cut(s)	833, 840
PspEI	GGTNACC	1 cut(s)	51
RseI	CAYNNNNRTG	3 cut(s)	99, 931, 982
SaqAI	TTAA	6 cut(s)	312, 336, 512, 938, 1014, 1111
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	5 cut(s)	231, 526, 661, 961, 1073
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	271
SfuI	TTCGAA	1 cut(s)	930
SmiMI	CAYNNNNRTG	3 cut(s)	99, 931, 982
Sse9I	AATT	6 cut(s)	227, 325, 509, 514, 811, 1066
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	2 cut(s)	356, 410
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	2 cut(s)	279, 611
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	5 cut(s)	371, 384, 397, 488, 829
TaiI	ACGT	1 cut(s)	1026
TaqI	TCGA	7 cut(s)	184, 422, 438, 461, 468, 870, 930
TasI	AATT	6 cut(s)	227, 325, 509, 514, 811, 1066
TfiI	GAWTC	4 cut(s)	497, 547, 745, 974
Tru1I	TTAA	6 cut(s)	312, 336, 512, 938, 1014, 1111
Tru9I	TTAA	6 cut(s)	312, 336, 512, 938, 1014, 1111
TscAI	CASTG	2 cut(s)	499, 786
TseFI	GTSAC	3 cut(s)	51, 397, 786
TseI	GCWGC	1 cut(s)	18
Tsp45I	GTSAC	3 cut(s)	51, 397, 786
TspDTI	ATGAA	7 cut(s)	233, 318, 574, 758, 903, 1023, 1079
TspGWI	ACGGA	1 cut(s)	743
TspRI	CASTG	2 cut(s)	499, 786
XapI	RAATTY	3 cut(s)	325, 514, 1066
XceI	RCATGY	1 cut(s)	794
XmiI	GTMKAC	1 cut(s)	591
XspI	CTAG	2 cut(s)	279, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.