Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8407595.1

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

559 .. 1152

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8407595.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atgaccacatctgctgatcatcatcatcaatattcccaaatggcatgtcttaatccaaacaaccaagatcatattgtgaatcaaactttcattgcaaggccgtctgcataccccctatatatgtttgaggctgcttcacttgatcatgacggtactactcgtgcaaacaacattaatatcaatgtacatgtagatcagcatttcccactcaacgtgaactcgaacaatcttggggcatggattttggatcggcataatgttcaaccccttccttctacagcaccatttacaaacatggatgcaaatctgttaatgccatccctcataggaagtactactactgttaatgcaaacatggttgaagtggaatcttgtagcaatattgatgaagaaggtgatatttcaatggagtgcttgcagagtcatcaggatttgattgcagtagttcattcccggcaacagcaaccgtgttcgaacttccatttttgctgggatactgttgaagaacaacatggaggggatgaaattgctgggccacttcatcgcaatacgggagctaatatgatgtcttcatctctcccatcctacctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

197

Amino Acids

21.88

Weight (kDa)

4.89

Isoelectric Point (pI)

61.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	255
AfaI	GTAC	3 cut(s)	154, 186, 334
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	4 cut(s)	263, 362, 405, 503
AluBI	AGCT	1 cut(s)	557
AluI	AGCT	1 cut(s)	557
AlwI	GGATC	1 cut(s)	255
AoxI	GGCC	2 cut(s)	98, 533
ApeKI	GCWGC	1 cut(s)	131
ArsI	GACNNNNNNTTYG	2 cut(s)	31, 63
AseI	ATTAAT	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	533
AsuC2I	CCSGG	1 cut(s)	454
AsuHPI	GGTGA	1 cut(s)	407
AsuII	TTCGAA	1 cut(s)	473
BarI	GAAGNNNNNNTAC	2 cut(s)	322, 354
BauI	CACGAG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	561
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	325, 589
BceAI	ACGGC	1 cut(s)	85
BciVI	GTATCC	1 cut(s)	487
BclI	TGATCA	2 cut(s)	16, 142
BcnI	CCSGG	1 cut(s)	454
BfmI	CTRYAG	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	487
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmcAI	AGTACT	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	533
BmrFI	CCNGG	1 cut(s)	454
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	561
Bpu14I	TTCGAA	1 cut(s)	473
BpuMI	CCSGG	1 cut(s)	454
BsaBI	GATNNNNATC	2 cut(s)	21, 303
Bse3DI	GCAATG	1 cut(s)	90
Bse8I	GATNNNNATC	2 cut(s)	21, 303
BseGI	GGATG	4 cut(s)	304, 317, 526, 581
BseJI	GATNNNNATC	2 cut(s)	21, 303
BseMI	GCAATG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	118
BseYI	CCCAGC	2 cut(s)	489, 530
BshFI	GGCC	2 cut(s)	100, 535
BsiSI	CCGG	1 cut(s)	454
BsnI	GGCC	2 cut(s)	100, 535
Bsp119I	TTCGAA	1 cut(s)	473
Bsp1407I	TGTACA	1 cut(s)	184
Bsp143I	GATC	5 cut(s)	16, 67, 142, 193, 247
BspANI	GGCC	2 cut(s)	100, 535
BspHI	TCATGA	1 cut(s)	145
BspPI	GGATC	1 cut(s)	255
BspT104I	TTCGAA	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	90
BsrGI	TGTACA	1 cut(s)	184
BssMI	GATC	5 cut(s)	16, 67, 142, 193, 247
BssSI	CACGAG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	159
Bst4CI	ACNGT	4 cut(s)	152, 343, 468, 499
BstAUI	TGTACA	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	473
BstC8I	GCNNGC	1 cut(s)	416
BstF5I	GGATG	4 cut(s)	304, 317, 526, 581
BstKTI	GATC	5 cut(s)	19, 70, 145, 196, 250
BstMBI	GATC	5 cut(s)	16, 67, 142, 193, 247
BstNSI	RCATGY	2 cut(s)	48, 191
BstSCI	CCNGG	1 cut(s)	452
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	561
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	2 cut(s)	100, 535
BtgZI	GCGATG	1 cut(s)	527
BtsCI	GGATG	4 cut(s)	304, 317, 526, 581
Cac8I	GCNNGC	1 cut(s)	416
CciI	TCATGA	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	533
Csp6I	GTAC	3 cut(s)	153, 185, 333
CviAII	CATG	7 cut(s)	45, 146, 188, 237, 295, 355, 512
CviJI	RGCY	4 cut(s)	100, 131, 535, 557
CviKI_1	RGCY	4 cut(s)	100, 131, 535, 557
CviQI	GTAC	3 cut(s)	153, 185, 333
DpnI	GATC	5 cut(s)	18, 69, 144, 195, 249
DpnII	GATC	5 cut(s)	16, 67, 142, 193, 247
FaeI	CATG	7 cut(s)	48, 149, 191, 240, 298, 358, 515
FatI	CATG	7 cut(s)	44, 145, 187, 236, 294, 354, 511
FbaI	TGATCA	2 cut(s)	16, 142
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	4 cut(s)	304, 311, 533, 568
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
GsaI	CCCAGC	2 cut(s)	493, 534
HaeIII	GGCC	2 cut(s)	100, 535
HapII	CCGG	1 cut(s)	454
Hin1II	CATG	7 cut(s)	48, 149, 191, 240, 298, 358, 515
HinfI	GANTC	3 cut(s)	79, 368, 421
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	593
Hpy188III	TCNNGA	2 cut(s)	146, 428
Hpy8I	GTNNAC	1 cut(s)	217
HpyAV	CCTTC	3 cut(s)	278, 282, 386
HpyCH4III	ACNGT	4 cut(s)	152, 343, 468, 499
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	7 cut(s)	95, 107, 164, 302, 350, 418, 440
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	7 cut(s)	48, 149, 191, 240, 298, 358, 515
Ksp22I	TGATCA	2 cut(s)	16, 142
Kzo9I	GATC	5 cut(s)	16, 67, 142, 193, 247
LmnI	GCTCC	1 cut(s)	554
LpnPI	CCDG	4 cut(s)	413, 467, 475, 516
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	289
MaeII	ACGT	1 cut(s)	213
MalI	GATC	5 cut(s)	18, 69, 144, 195, 249
MboI	GATC	5 cut(s)	16, 67, 142, 193, 247
MboII	GAAGA	3 cut(s)	401, 515, 561
MluCI	AATT	1 cut(s)	525
MlyI	GAGTC	1 cut(s)	430
MnlI	CCTC	3 cut(s)	121, 332, 509
MseI	TTAA	4 cut(s)	51, 174, 311, 345
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	1 cut(s)	454
NciI	CCSGG	1 cut(s)	454
NdeII	GATC	5 cut(s)	16, 67, 142, 193, 247
NlaIII	CATG	7 cut(s)	48, 149, 191, 240, 298, 358, 515
NspI	RCATGY	2 cut(s)	48, 191
NspV	TTCGAA	1 cut(s)	473
PagI	TCATGA	1 cut(s)	145
PciI	ACATGT	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	79, 368
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PscI	ACATGT	1 cut(s)	187
PshBI	ATTAAT	1 cut(s)	174
PspFI	CCCAGC	2 cut(s)	489, 530
PspPI	GGNCC	1 cut(s)	533
RsaI	GTAC	3 cut(s)	154, 186, 334
RsaNI	GTAC	3 cut(s)	153, 185, 333
SaqAI	TTAA	4 cut(s)	51, 174, 311, 345
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	5 cut(s)	16, 67, 142, 193, 247
Sau96I	GGNCC	1 cut(s)	533
ScaI	AGTACT	1 cut(s)	334
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	454
SetI	ASST	4 cut(s)	216, 397, 559, 591
SfaNI	GCATC	1 cut(s)	289
SfcI	CTRYAG	1 cut(s)	276
SfuI	TTCGAA	1 cut(s)	473
Sse9I	AATT	1 cut(s)	525
SspI	AATATT	2 cut(s)	32, 382
StyD4I	CCNGG	1 cut(s)	452
TaaI	ACNGT	4 cut(s)	152, 343, 468, 499
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	2 cut(s)	221, 473
TasI	AATT	1 cut(s)	525
TatI	WGTACW	2 cut(s)	184, 332
TfiI	GAWTC	2 cut(s)	79, 368
Tru1I	TTAA	4 cut(s)	51, 174, 311, 345
Tru9I	TTAA	4 cut(s)	51, 174, 311, 345
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	6 cut(s)	79, 402, 437, 530, 537, 561
VspI	ATTAAT	1 cut(s)	174
XceI	RCATGY	2 cut(s)	48, 191
ZrmI	AGTACT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.