Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

10331154 .. 10331543

Gene Structure 390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG129800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGACGCCATTCGTGTTGTTTGAAGCAAAAGTTAAGGAAAGGTCTCTGGTCACCGGAAGAAGACGAGAAGCTCTTCAATTACATCACTAGATTTGGCGTCGGTTGCTGGAGCTCTGTCCCCAAGCTTGCAGGGTTGCAAAGATGTGGTAAGAGTTGCAGGTTGAGATGGATAAACTACTTGAGGCCTGATTTAAAGAGAGGAATGTTCTCTCAGCAAGAAGAGGACCTCATTATTAGTCTCCATGAAGTTCTTGGGAACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

88

Amino Acids

10.31

Weight (kDa)

9.5

Isoelectric Point (pI)

71.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	7.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	5.8e-13	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	150
AcyI	GRCGYC	2 cut(s)	7, 99
AgsI	TTSAA	2 cut(s)	25, 79
AluBI	AGCT	3 cut(s)	73, 114, 127
AluI	AGCT	3 cut(s)	73, 114, 127
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	50, 245
AoxI	GGCC	1 cut(s)	185
Asp700I	GAANNNNTTC	1 cut(s)	74
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	226
BanII	GRGCYC	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	116
BccI	CCATC	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	50, 245
BfaI	CTAG	1 cut(s)	90
BfuAI	ACCTGC	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	202
BsaHI	GRCGYC	2 cut(s)	7, 99
BsaI	GGTCTC	1 cut(s)	50
BsaWI	WCCGGW	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	227
BshFI	GGCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	2 cut(s)	18, 104
BsmAI	GTCTC	2 cut(s)	50, 245
BsmFI	GGGAC	2 cut(s)	18, 104
BsnI	GGCC	1 cut(s)	187
Bso31I	GGTCTC	1 cut(s)	50
Bsp1286I	GDGCHC	1 cut(s)	116
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	226
BspMI	ACCTGC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	50
BssNI	GRCGYC	2 cut(s)	7, 99
Bst6I	CTCTTC	2 cut(s)	80, 216
BstACI	GRCGYC	2 cut(s)	7, 99
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	1 cut(s)	213
BstEII	GGTNACC	1 cut(s)	51
BstMAI	GTCTC	2 cut(s)	50, 245
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstPI	GGTNACC	1 cut(s)	51
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	187
BveI	ACCTGC	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	2 cut(s)	15, 88
CviAII	CATG	1 cut(s)	245
CviJI	RGCY	4 cut(s)	73, 114, 127, 187
CviKI_1	RGCY	4 cut(s)	73, 114, 127, 187
DdeI	CTNAG	1 cut(s)	213
DraI	TTTAAA	1 cut(s)	195
Eam1104I	CTCTTC	2 cut(s)	80, 216
EarI	CTCTTC	2 cut(s)	80, 216
Ecl136II	GAGCTC	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	226
Eco53kI	GAGCTC	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	51
EcoICRI	GAGCTC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	116
FaeI	CATG	1 cut(s)	248
FaiI	YATR	1 cut(s)	246
FaqI	GGGAC	2 cut(s)	18, 104
FatI	CATG	1 cut(s)	244
FriOI	GRGCYC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	56
HgaI	GACGC	2 cut(s)	15, 88
Hin1I	GRCGYC	2 cut(s)	7, 99
Hin1II	CATG	1 cut(s)	248
HindIII	AAGCTT	1 cut(s)	125
HpaII	CCGG	1 cut(s)	56
HphI	GGTGA	1 cut(s)	45
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4V	TGCA	3 cut(s)	131, 139, 159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	1 cut(s)	213
Hsp92I	GRCGYC	2 cut(s)	7, 99
Hsp92II	CATG	1 cut(s)	248
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	7 cut(s)	34, 69, 94, 117, 145, 201, 247
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	51
MboII	GAAGA	4 cut(s)	67, 71, 74, 233
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	1 cut(s)	79
MnlI	CCTC	4 cut(s)	177, 194, 217, 239
MroXI	GAANNNNTTC	1 cut(s)	74
MseI	TTAA	2 cut(s)	35, 194
MspI	CCGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	105
NlaIII	CATG	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	74
PpuMI	RGGWCCY	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	226
PspEI	GGTNACC	1 cut(s)	51
PspPI	GGNCC	1 cut(s)	226
PspPPI	RGGWCCY	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	35, 194
Sau96I	GGNCC	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	7 cut(s)	46, 75, 116, 129, 164, 231, 266
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	1 cut(s)	79
SseBI	AGGCCT	1 cut(s)	187
SspMI	CTAG	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	116
StuI	AGGCCT	1 cut(s)	187
TasI	AATT	1 cut(s)	79
Tru1I	TTAA	2 cut(s)	35, 194
Tru9I	TTAA	2 cut(s)	35, 194
TseFI	GTSAC	1 cut(s)	51
Tsp45I	GTSAC	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	74
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.