Rh7BG161900
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003850
Physical Location & Seq
Forward (+)
12520991 .. 12523396
2406 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG161900.1

Sequence Viewer

Length: 1059 bp
ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTGAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAGCTCATCAGATACATCACCACCCATGGCTATGGTTGTTGGAGCGAAGTCCCTGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGCTGCAGGTTGAGGTGGATTAATTATTTGAGGCCTGATATTAGAAGAGGGAGATTTACTCCAGAAGAAGAGAAATTGATTATTAGCCTTCATGGGGTTGTAGGCAACAGATGGGCTCATATAGCAAGTCACCTGCCTGGAAGAACAGACAACGAGATCAAGAACTACTGGAATTCATGGATCAAAAAGAAGATTCGAAAACCTTCCCCACCATCATCGACTTCGACAACAACCAGCACCGCTGCACCTATTGCTCAAATGGGTTATAATGACTCAACCCAGCAACTAGATTTTGCAAGTCAAGATTACATCGCATCAAAGCCTCACGCTCAAGATCAAACCATATTCTCTTCAACATACCCTATGTTCATGTTTGATACCACTGCAATCGATCAATTGGCTGCCGAAAATTACAATGCGCGTGTTGAGCTCTTCCAAGATATGGTCTCAGTGGGTTTTAGTAACTCTGACGTGCCGTGGAATCTGAACCAGCATCAAGTCCAGGCTCTTCCTCCTCCTCCTCTTCCTCCTCCAGCCATGGACATAAACTATTTGCCGCCATTGATAGAGAACATGGACAGCATGTTGCCTATCATTGATGATGATCATCATCAAGTACTCCAACCTAACAATTGTAGTAACATGGATATGGAGGAGGGAGATCATCATCACCATCAGGATCAAATGGCAGAGTTGAATGAATGGGTTGTGTCCCAACAACAGTACTCGTCATCATGTCCTAACTTTCTTTTCTGGGACGAGATGAATGGTGTGGTGGATGATCATCAAGGGCCAGGATCAATAAATATCGTTGGAGAAGATCATCATAATATTATTGTACCTGCAACTTCATCAACTACGGGAGCCAATGCAGTACTGCTGTCTTCATTTCCTTCATCTTTATAA

Protein Analysis

352

Amino Acids

39.78

Weight (kDa)

5.42

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 7.7e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 118 9.1e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 420, 1057
AarI CACCTGC 1 cut(s) 294
Acc36I ACCTGC 3 cut(s) 150, 294, 1003
AccB7I CCANNNNNTGG 1 cut(s) 595
AccII CGCG 1 cut(s) 574
AciI CCGC 2 cut(s) 393, 710
AclWI GGATC 3 cut(s) 341, 840, 958
AcsI RAATTY 1 cut(s) 325
AfaI GTAC 4 cut(s) 771, 878, 993, 1029
AfiI CCNNNNNNNGG 3 cut(s) 31, 247, 595
AgsI TTSAA 3 cut(s) 140, 507, 850
AjiI CACGTC 1 cut(s) 625
AjnI CCWGG 3 cut(s) 289, 654, 946
AluBI AGCT 4 cut(s) 73, 131, 156, 583
AluI AGCT 4 cut(s) 73, 131, 156, 583
Alw21I GWGCWC 1 cut(s) 585
Alw26I GTCTC 2 cut(s) 57, 604
AlwI GGATC 3 cut(s) 341, 840, 958
AoxI GGCC 2 cut(s) 185, 944
ApeKI GCWGC 4 cut(s) 18, 156, 395, 554
ApoI RAATTY 1 cut(s) 325
AseI ATTAAT 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 355
AspLEI GCGC 1 cut(s) 574
AspS9I GGNCC 1 cut(s) 944
AsuHPI GGTGA 4 cut(s) 46, 79, 275, 815
AsuII TTCGAA 1 cut(s) 349
AxyI CCTNAGG 1 cut(s) 57
BanII GRGCYC 2 cut(s) 271, 585
BbsI GAAGAC 1 cut(s) 1029
Bbv12I GWGCWC 1 cut(s) 585
BbvI GCAGC 4 cut(s) 5, 143, 382, 541
BccI CCATC 3 cut(s) 258, 373, 834
BceAI ACGGC 1 cut(s) 613
BciT130I CCWGG 3 cut(s) 291, 656, 948
BclI TGATCA 2 cut(s) 757, 934
BcoDI GTCTC 2 cut(s) 57, 604
BfaI CTAG 1 cut(s) 440
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 3 cut(s) 150, 294, 1003
BisI GCNGC 5 cut(s) 19, 157, 396, 555, 710
BlsI GCNGC 5 cut(s) 20, 158, 397, 556, 711
BmcAI AGTACT 3 cut(s) 771, 878, 1029
Bme1390I CCNGG 3 cut(s) 291, 656, 948
BmgBI CACGTC 1 cut(s) 625
BmgT120I GGNCC 1 cut(s) 944
BmiI GGNNCC 1 cut(s) 1018
BmrFI CCNGG 3 cut(s) 291, 656, 948
BmsI GCATC 2 cut(s) 476, 655
BpiI GAAGAC 1 cut(s) 1029
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpmI CTGGAG 2 cut(s) 198, 669
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 468
Bsa29I ATCGAT 1 cut(s) 543
BsaBI GATNNNNATC 5 cut(s) 756, 759, 762, 819, 936
BsaI GGTCTC 2 cut(s) 57, 604
BsaJI CCNNGG 3 cut(s) 94, 629, 690
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 247, 595
Bse1I ACTGG 1 cut(s) 326
Bse21I CCTNAGG 1 cut(s) 57
Bse8I GATNNNNATC 5 cut(s) 756, 759, 762, 819, 936
BseBI CCWGG 3 cut(s) 291, 656, 948
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 3 cut(s) 94, 629, 690
BseGI GGATG 1 cut(s) 937
BseJI GATNNNNATC 5 cut(s) 756, 759, 762, 819, 936
BseLI CCNNNNNNNGG 3 cut(s) 31, 247, 595
BseMII CTCAG 3 cut(s) 48, 114, 615
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 5 cut(s) 657, 660, 663, 672, 821
BseXI GCAGC 4 cut(s) 5, 143, 382, 541
BseYI CCCAGC 2 cut(s) 131, 432
BsgI GTGCAG 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 574
BshFI GGCC 2 cut(s) 187, 946
BshVI ATCGAT 1 cut(s) 543
BsiHKAI GWGCWC 1 cut(s) 585
BslFI GGGAC 3 cut(s) 104, 850, 923
BslI CCNNNNNNNGG 3 cut(s) 31, 247, 595
BsmAI GTCTC 2 cut(s) 57, 604
BsmFI GGGAC 3 cut(s) 104, 850, 923
BsnI GGCC 2 cut(s) 187, 946
Bso31I GGTCTC 2 cut(s) 57, 604
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 271, 585
Bsp19I CCATGG 2 cut(s) 94, 690
BspACI CCGC 2 cut(s) 393, 710
BspANI GGCC 2 cut(s) 187, 946
BspCNI CTCAG 3 cut(s) 49, 115, 614
BspDI ATCGAT 1 cut(s) 543
BspFNI CGCG 1 cut(s) 574
BspLI GGNNCC 1 cut(s) 1018
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 3 cut(s) 150, 294, 1003
BspPI GGATC 3 cut(s) 341, 840, 958
BspQI GCTCTTC 2 cut(s) 590, 666
BspT104I TTCGAA 1 cut(s) 349
BspTNI GGTCTC 2 cut(s) 57, 604
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 94, 629, 690
BssT1I CCWWGG 2 cut(s) 94, 690
Bst2UI CCWGG 3 cut(s) 291, 656, 948
Bst4CI ACNGT 1 cut(s) 876
Bst6I CTCTTC 7 cut(s) 32, 193, 216, 508, 590, 666, 681
BstAPI GCANNNNNTGC 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 349
BstDEI CTNAG 3 cut(s) 57, 123, 601
BstDSI CCRYGG 3 cut(s) 94, 629, 690
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 1 cut(s) 937
BstFNI CGCG 1 cut(s) 574
BstHHI GCGC 1 cut(s) 574
BstMAI GTCTC 2 cut(s) 57, 604
BstMWI GCNNNNNNNGC 3 cut(s) 275, 404, 580
BstNI CCWGG 3 cut(s) 291, 656, 948
BstNSI RCATGY 1 cut(s) 739
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 3 cut(s) 289, 654, 946
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 574
BstV1I GCAGC 4 cut(s) 5, 143, 382, 541
BstV2I GAAGAC 1 cut(s) 1029
BstXI CCANNNNNNTGG 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 543
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 187, 946
BsuTUI ATCGAT 1 cut(s) 543
BtgI CCRYGG 3 cut(s) 94, 629, 690
BtgZI GCGATG 1 cut(s) 448
BtrI CACGTC 1 cut(s) 625
BtsCI GGATG 1 cut(s) 937
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 2 cut(s) 534, 609
BveI ACCTGC 3 cut(s) 150, 294, 1003
CfoI GCGC 1 cut(s) 574
Cfr13I GGNCC 1 cut(s) 944
ClaI ATCGAT 1 cut(s) 543
Csp6I GTAC 4 cut(s) 770, 877, 992, 1028
CviAII CATG 9 cut(s) 95, 245, 330, 523, 691, 727, 736, 796, 888
CviQI GTAC 4 cut(s) 770, 877, 992, 1028
DdeI CTNAG 3 cut(s) 57, 123, 601
Eam1104I CTCTTC 7 cut(s) 32, 193, 216, 508, 590, 666, 681
EarI CTCTTC 7 cut(s) 32, 193, 216, 508, 590, 666, 681
Ecl136II GAGCTC 1 cut(s) 583
Eco130I CCWWGG 2 cut(s) 94, 690
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 271, 585
Eco31I GGTCTC 2 cut(s) 57, 604
Eco53kI GAGCTC 1 cut(s) 583
Eco81I CCTNAGG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 5
EcoICRI GAGCTC 1 cut(s) 583
EcoO65I GGTNACC 1 cut(s) 5
EcoRI GAATTC 1 cut(s) 325
EcoRII CCWGG 3 cut(s) 289, 654, 946
EcoT14I CCWWGG 2 cut(s) 94, 690
EcoT38I GRGCYC 2 cut(s) 271, 585
ErhI CCWWGG 2 cut(s) 94, 690
FaeI CATG 9 cut(s) 98, 248, 333, 526, 694, 730, 739, 799, 891
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 3 cut(s) 104, 850, 923
FatI CATG 9 cut(s) 94, 244, 329, 522, 690, 726, 735, 795, 887
FbaI TGATCA 2 cut(s) 757, 934
Fnu4HI GCNGC 5 cut(s) 19, 157, 396, 555, 710
FokI GGATG 1 cut(s) 944
FriOI GRGCYC 2 cut(s) 271, 585
Fsp4HI GCNGC 5 cut(s) 19, 157, 396, 555, 710
FspBI CTAG 1 cut(s) 440
GlaI GCGC 1 cut(s) 573
GluI GCNGC 5 cut(s) 19, 157, 396, 555, 710
GsaI CCCAGC 2 cut(s) 135, 436
GsuI CTGGAG 2 cut(s) 198, 669
HaeIII GGCC 2 cut(s) 187, 946
HhaI GCGC 1 cut(s) 574
Hin1II CATG 9 cut(s) 98, 248, 333, 526, 694, 730, 739, 799, 891
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HinfI GANTC 3 cut(s) 346, 425, 634
HphI GGTGA 4 cut(s) 46, 79, 275, 815
Hpy188I TCNGA 3 cut(s) 80, 622, 639
Hpy188III TCNNGA 6 cut(s) 56, 215, 313, 455, 485, 830
HpyAV CCTTC 4 cut(s) 25, 251, 366, 1056
HpyCH4III ACNGT 1 cut(s) 876
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 7 cut(s) 21, 159, 398, 449, 539, 998, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 404, 580
HpyF3I CTNAG 3 cut(s) 57, 123, 601
HpySE526I ACGT 1 cut(s) 624
Hsp92II CATG 9 cut(s) 98, 248, 333, 526, 694, 730, 739, 799, 891
HspAI GCGC 1 cut(s) 572
Ksp22I TGATCA 2 cut(s) 757, 934
LguI GCTCTTC 2 cut(s) 590, 666
LmnI GCTCC 2 cut(s) 111, 1016
Lsp1109I GCAGC 4 cut(s) 5, 143, 382, 541
LweI GCATC 2 cut(s) 476, 655
MaeI CTAG 1 cut(s) 440
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 4 cut(s) 5, 281, 614, 791
MfeI CAATTG 2 cut(s) 548, 784
MhlI GDGCHC 2 cut(s) 271, 585
MluCI AATT 6 cut(s) 175, 227, 325, 548, 562, 784
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 3 cut(s) 89, 799, 946
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 2 cut(s) 99, 800
MspA1I CMGCKG 1 cut(s) 395
MspR9I CCNGG 3 cut(s) 291, 656, 948
MunI CAATTG 2 cut(s) 548, 784
MvaI CCWGG 3 cut(s) 291, 656, 948
MvnI CGCG 1 cut(s) 574
MwoI GCNNNNNNNGC 3 cut(s) 275, 404, 580
NcoI CCATGG 2 cut(s) 94, 690
NlaIII CATG 9 cut(s) 98, 248, 333, 526, 694, 730, 739, 799, 891
NlaIV GGNNCC 1 cut(s) 1018
NmuCI GTSAC 2 cut(s) 5, 281
NspI RCATGY 1 cut(s) 739
NspV TTCGAA 1 cut(s) 349
PaqCI CACCTGC 1 cut(s) 294
PceI AGGCCT 1 cut(s) 187
PciSI GCTCTTC 2 cut(s) 590, 666
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 2 cut(s) 346, 634
PflMI CCANNNNNTGG 1 cut(s) 595
PkrI GCNGC 5 cut(s) 20, 158, 397, 556, 711
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PshBI ATTAAT 1 cut(s) 174
PsiI TTATAA 2 cut(s) 420, 1057
Psp124BI GAGCTC 1 cut(s) 585
Psp6I CCWGG 3 cut(s) 289, 654, 946
PspEI GGTNACC 1 cut(s) 5
PspFI CCCAGC 2 cut(s) 131, 432
PspGI CCWGG 3 cut(s) 289, 654, 946
PspN4I GGNNCC 1 cut(s) 1018
PspPI GGNCC 1 cut(s) 944
PstI CTGCAG 1 cut(s) 161
RsaI GTAC 4 cut(s) 771, 878, 993, 1029
RsaNI GTAC 4 cut(s) 770, 877, 992, 1028
RseI CAYNNNNRTG 2 cut(s) 99, 800
SacI GAGCTC 1 cut(s) 585
SapI GCTCTTC 2 cut(s) 590, 666
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 5 cut(s) 19, 157, 396, 555, 710
Sau96I GGNCC 1 cut(s) 944
ScaI AGTACT 3 cut(s) 771, 878, 1029
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 3 cut(s) 291, 656, 948
SduI GDGCHC 2 cut(s) 271, 585
SfaNI GCATC 2 cut(s) 476, 655
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 349
SmiMI CAYNNNNRTG 2 cut(s) 99, 800
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
Sse9I AATT 6 cut(s) 175, 227, 325, 548, 562, 784
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 2 cut(s) 393, 710
SspI AATATT 1 cut(s) 985
SspMI CTAG 1 cut(s) 440
SstI GAGCTC 1 cut(s) 585
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 3 cut(s) 289, 654, 946
StyI CCWWGG 2 cut(s) 94, 690
TaaI ACNGT 1 cut(s) 876
TaiI ACGT 1 cut(s) 627
TaqI TCGA 4 cut(s) 349, 371, 377, 543
TasI AATT 6 cut(s) 175, 227, 325, 548, 562, 784
TatI WGTACW 3 cut(s) 769, 876, 1027
TauI GCSGC 1 cut(s) 712
TfiI GAWTC 2 cut(s) 346, 634
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 2 cut(s) 541, 609
TseFI GTSAC 2 cut(s) 5, 281
TseI GCWGC 4 cut(s) 18, 156, 395, 554
Tsp45I GTSAC 2 cut(s) 5, 281
TspDTI ATGAA 8 cut(s) 233, 318, 511, 867, 932, 993, 1029, 1038
TspRI CASTG 2 cut(s) 541, 609
Van91I CCANNNNNTGG 1 cut(s) 595
VspI ATTAAT 1 cut(s) 174
XapI RAATTY 1 cut(s) 325
XceI RCATGY 1 cut(s) 739
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 1 cut(s) 440
ZrmI AGTACT 3 cut(s) 771, 878, 1029
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.