FvH4_5g03100
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0003850
Physical Location & Seq
Reverse (-)
1865446 .. 1867913
2468 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03100.t1

Sequence Viewer

Length: 1062 bp
ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTGAAGAGAGGGCTTTGGTCTCCCGAGGAAGATGAGAAGCTCATCAGATACATCACCACCCATGGCTATGGCTGTTGGAGCGAAGTCCCTGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGCTGCAGGTTGAGGTGGATTAATTATTTGAGGCCTGATATTAGGAGAGGCAGATTTACTCCAGAAGAAGAGAAACTGATTATTAGCCTTCATGGGGTCGTAGGCAACAGATGGGCTCATATAGCAAGTCACCTGCCTGGAAGAACAGACAATGAGATCAAGAACTACTGGAACTCATGGATCAAAAAGAAGATTCGAAAACCTTCCCCACCATCATCGATTTCGACAGCAACAAGCACGGTTGCACCTTTTGCTCAAATGGGTTATAATGACTCGACCCAGCAACTAGATTTTGTAAGTCAAGATTACATCGCATCAAAGCCTCACGCTCAAGATCAAACCCTATTCTCTTCATCAGCATGCCCTATGTTCATGTTTGATACCACTGCAATCGATCAATTGCCTTCCGAAAACTACAATGCGCGCGTTGAGCTCTTCCAAGACATGGTCTCATCTGCAGTGGGATTTAGTAACTCCGACGTGCCGTGGAATCTGAACCAGCATCAAGTCCAGGCTCTTCCTCCTCCTCCTCCTCCAGCCATGGACATAAACTATTTGCCGCCATTAATAGAGAACATGGACAGCATGTTGCCTATCATTGATGATCATCATCATCAAGTACTTCATCCTAACAATTGTAGTAACATGGATATGGAGGAGCGAGATCATCATCACCATCAAGATCAAATGGCAGAGTTGAATGAATGGGTCGTGTCCCAGCAACAGTACTCGTCATCATGCCCTAGCTTTCTTTTCTGGGACGAGATGAATGGTGTGGTTGGTGATCATCAAGGGCCAGGAGCAATAAATATCATTGGAGAAGATCATCATAATATTATTGTACCGGCAACTTCATCAACTACAGAAGCTAATACAGTTCTGCTGTCTTCTTATCCTTCATCTCTTTAA

Protein Analysis

354

Amino Acids

40.0

Weight (kDa)

5.69

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 7.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 118 9.1e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
AarI CACCTGC 1 cut(s) 294
Acc36I ACCTGC 2 cut(s) 150, 294
AccB7I CCANNNNNTGG 1 cut(s) 598
AccII CGCG 2 cut(s) 577, 579
AciI CCGC 1 cut(s) 713
AclWI GGATC 1 cut(s) 341
AfaI GTAC 3 cut(s) 774, 881, 996
AfiI CCNNNNNNNGG 3 cut(s) 31, 247, 598
AgsI TTSAA 2 cut(s) 140, 853
AjiI CACGTC 1 cut(s) 634
AjnI CCWGG 3 cut(s) 289, 663, 949
AluBI AGCT 6 cut(s) 73, 131, 156, 586, 900, 1022
AluI AGCT 6 cut(s) 73, 131, 156, 586, 900, 1022
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 57, 607
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 56
AoxI GGCC 2 cut(s) 185, 947
ApeKI GCWGC 2 cut(s) 18, 156
AseI ATTAAT 2 cut(s) 174, 719
Asp700I GAANNNNTTC 1 cut(s) 355
AspLEI GCGC 2 cut(s) 577, 579
AspS9I GGNCC 1 cut(s) 947
AsuHPI GGTGA 5 cut(s) 46, 79, 275, 818, 947
AsuII TTCGAA 1 cut(s) 349
AvaI CYCGRG 1 cut(s) 56
BanII GRGCYC 2 cut(s) 271, 588
BbsI GAAGAC 1 cut(s) 1032
Bbv12I GWGCWC 1 cut(s) 588
BbvI GCAGC 2 cut(s) 5, 143
BccI CCATC 3 cut(s) 258, 373, 837
BceAI ACGGC 1 cut(s) 622
BciT130I CCWGG 3 cut(s) 291, 665, 951
BclI TGATCA 2 cut(s) 757, 937
BcoDI GTCTC 2 cut(s) 57, 607
BfaI CTAG 2 cut(s) 440, 897
BfmI CTRYAG 3 cut(s) 157, 609, 1014
BfuAI ACCTGC 2 cut(s) 150, 294
BisI GCNGC 3 cut(s) 19, 157, 713
BlsI GCNGC 3 cut(s) 20, 158, 714
BmcAI AGTACT 2 cut(s) 774, 881
Bme1390I CCNGG 3 cut(s) 291, 665, 951
BmeT110I CYCGRG 1 cut(s) 56
BmgBI CACGTC 1 cut(s) 634
BmgT120I GGNCC 1 cut(s) 947
BmrFI CCNGG 3 cut(s) 291, 665, 951
BmsI GCATC 2 cut(s) 476, 664
BpiI GAAGAC 1 cut(s) 1032
BpmI CTGGAG 2 cut(s) 198, 672
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 468
Bsa29I ATCGAT 2 cut(s) 371, 546
BsaBI GATNNNNATC 3 cut(s) 759, 762, 822
BsaI GGTCTC 2 cut(s) 57, 607
BsaJI CCNNGG 4 cut(s) 57, 94, 638, 693
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 247, 598
Bse118I RCCGGY 1 cut(s) 997
Bse1I ACTGG 1 cut(s) 326
Bse8I GATNNNNATC 3 cut(s) 759, 762, 822
BseBI CCWGG 3 cut(s) 291, 665, 951
BseCI ATCGAT 2 cut(s) 371, 546
BseDI CCNNGG 4 cut(s) 57, 94, 638, 693
BseGI GGATG 1 cut(s) 778
BseJI GATNNNNATC 3 cut(s) 759, 762, 822
BseLI CCNNNNNNNGG 3 cut(s) 31, 247, 598
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 326
BsePI GCGCGC 1 cut(s) 575
BseRI GAGGAG 5 cut(s) 666, 669, 672, 675, 824
BseXI GCAGC 2 cut(s) 5, 143
BseYI CCCAGC 3 cut(s) 131, 432, 870
Bsh1236I CGCG 2 cut(s) 577, 579
BshFI GGCC 2 cut(s) 187, 949
BshVI ATCGAT 2 cut(s) 371, 546
BsiHKAI GWGCWC 1 cut(s) 588
BsiHKCI CYCGRG 1 cut(s) 56
BsiSI CCGG 1 cut(s) 998
BslFI GGGAC 3 cut(s) 104, 853, 926
BslI CCNNNNNNNGG 3 cut(s) 31, 247, 598
BsmAI GTCTC 2 cut(s) 57, 607
BsmFI GGGAC 3 cut(s) 104, 853, 926
BsnI GGCC 2 cut(s) 187, 949
Bso31I GGTCTC 2 cut(s) 57, 607
BsoBI CYCGRG 1 cut(s) 56
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 271, 588
Bsp143I GATC 9 cut(s) 309, 333, 487, 547, 757, 817, 835, 937, 976
Bsp19I CCATGG 2 cut(s) 94, 693
BspACI CCGC 1 cut(s) 713
BspANI GGCC 2 cut(s) 187, 949
BspCNI CTCAG 1 cut(s) 115
BspDI ATCGAT 2 cut(s) 371, 546
BspFNI CGCG 2 cut(s) 577, 579
BspMAI CTGCAG 2 cut(s) 161, 613
BspMI ACCTGC 2 cut(s) 150, 294
BspPI GGATC 1 cut(s) 341
BspQI GCTCTTC 2 cut(s) 593, 675
BspT104I TTCGAA 1 cut(s) 349
BspTNI GGTCTC 2 cut(s) 57, 607
BsrFI RCCGGY 1 cut(s) 997
BsrI ACTGG 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 997
BssECI CCNNGG 4 cut(s) 57, 94, 638, 693
BssHII GCGCGC 1 cut(s) 575
BssMI GATC 9 cut(s) 309, 333, 487, 547, 757, 817, 835, 937, 976
BssT1I CCWWGG 2 cut(s) 94, 693
Bst2UI CCWGG 3 cut(s) 291, 665, 951
Bst4CI ACNGT 3 cut(s) 394, 879, 1030
Bst6I CTCTTC 5 cut(s) 32, 216, 508, 593, 675
BstAPI GCANNNNNTGC 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 349
BstC8I GCNNGC 2 cut(s) 514, 577
BstDEI CTNAG 1 cut(s) 123
BstDSI CCRYGG 3 cut(s) 94, 638, 693
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 1 cut(s) 778
BstFNI CGCG 2 cut(s) 577, 579
BstHHI GCGC 2 cut(s) 577, 579
BstKTI GATC 9 cut(s) 312, 336, 490, 550, 760, 820, 838, 940, 979
BstMAI GTCTC 2 cut(s) 57, 607
BstMBI GATC 9 cut(s) 309, 333, 487, 547, 757, 817, 835, 937, 976
BstMWI GCNNNNNNNGC 4 cut(s) 111, 275, 404, 583
BstNI CCWGG 3 cut(s) 291, 665, 951
BstNSI RCATGY 2 cut(s) 516, 742
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 3 cut(s) 289, 663, 949
BstSFI CTRYAG 3 cut(s) 157, 609, 1014
BstUI CGCG 2 cut(s) 577, 579
BstV1I GCAGC 2 cut(s) 5, 143
BstV2I GAAGAC 1 cut(s) 1032
BstXI CCANNNNNNTGG 1 cut(s) 101
Bsu15I ATCGAT 2 cut(s) 371, 546
BsuRI GGCC 2 cut(s) 187, 949
BsuTUI ATCGAT 2 cut(s) 371, 546
BtgI CCRYGG 3 cut(s) 94, 638, 693
BtgZI GCGATG 1 cut(s) 448
BtrI CACGTC 1 cut(s) 634
BtsCI GGATG 1 cut(s) 778
BtsI GCAGTG 2 cut(s) 537, 618
BtsIMutI CAGTG 2 cut(s) 537, 618
BveI ACCTGC 2 cut(s) 150, 294
Cac8I GCNNGC 2 cut(s) 514, 577
CfoI GCGC 2 cut(s) 577, 579
Cfr10I RCCGGY 1 cut(s) 997
Cfr13I GGNCC 1 cut(s) 947
ClaI ATCGAT 2 cut(s) 371, 546
Csp6I GTAC 3 cut(s) 773, 880, 995
CviQI GTAC 3 cut(s) 773, 880, 995
DdeI CTNAG 1 cut(s) 123
DpnI GATC 9 cut(s) 311, 335, 489, 549, 759, 819, 837, 939, 978
DpnII GATC 9 cut(s) 309, 333, 487, 547, 757, 817, 835, 937, 976
Eam1104I CTCTTC 5 cut(s) 32, 216, 508, 593, 675
EarI CTCTTC 5 cut(s) 32, 216, 508, 593, 675
Ecl136II GAGCTC 1 cut(s) 586
Eco130I CCWWGG 2 cut(s) 94, 693
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 271, 588
Eco31I GGTCTC 2 cut(s) 57, 607
Eco53kI GAGCTC 1 cut(s) 586
Eco88I CYCGRG 1 cut(s) 56
Eco91I GGTNACC 1 cut(s) 5
EcoICRI GAGCTC 1 cut(s) 586
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 3 cut(s) 289, 663, 949
EcoT14I CCWWGG 2 cut(s) 94, 693
EcoT38I GRGCYC 2 cut(s) 271, 588
ErhI CCWWGG 2 cut(s) 94, 693
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 3 cut(s) 104, 853, 926
FbaI TGATCA 2 cut(s) 757, 937
Fnu4HI GCNGC 3 cut(s) 19, 157, 713
FokI GGATG 1 cut(s) 765
FriOI GRGCYC 2 cut(s) 271, 588
Fsp4HI GCNGC 3 cut(s) 19, 157, 713
FspBI CTAG 2 cut(s) 440, 897
GlaI GCGC 2 cut(s) 576, 578
GluI GCNGC 3 cut(s) 19, 157, 713
GsaI CCCAGC 3 cut(s) 135, 436, 874
GsuI CTGGAG 2 cut(s) 198, 672
HaeIII GGCC 2 cut(s) 187, 949
HapII CCGG 1 cut(s) 998
HhaI GCGC 2 cut(s) 577, 579
Hin6I GCGC 2 cut(s) 575, 577
HinP1I GCGC 2 cut(s) 575, 577
HinfI GANTC 3 cut(s) 346, 425, 643
HpaII CCGG 1 cut(s) 998
HphI GGTGA 5 cut(s) 46, 79, 275, 818, 947
Hpy188I TCNGA 4 cut(s) 80, 562, 631, 648
Hpy188III TCNNGA 6 cut(s) 56, 215, 313, 455, 485, 833
Hpy99I CGWCG 1 cut(s) 635
HpyAV CCTTC 5 cut(s) 25, 251, 366, 567, 1059
HpyCH4III ACNGT 3 cut(s) 394, 879, 1030
HpyCH4IV ACGT 1 cut(s) 633
HpyCH4V TGCA 5 cut(s) 21, 159, 398, 542, 611
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 275, 404, 583
HpyF3I CTNAG 1 cut(s) 123
HpySE526I ACGT 1 cut(s) 633
HspAI GCGC 2 cut(s) 575, 577
Ksp22I TGATCA 2 cut(s) 757, 937
Kzo9I GATC 9 cut(s) 309, 333, 487, 547, 757, 817, 835, 937, 976
LguI GCTCTTC 2 cut(s) 593, 675
LmnI GCTCC 3 cut(s) 111, 811, 953
Lsp1109I GCAGC 2 cut(s) 5, 143
LweI GCATC 2 cut(s) 476, 664
MaeI CTAG 2 cut(s) 440, 897
MaeII ACGT 1 cut(s) 633
MaeIII GTNAC 4 cut(s) 5, 281, 623, 794
MalI GATC 9 cut(s) 311, 335, 489, 549, 759, 819, 837, 939, 978
MboI GATC 9 cut(s) 309, 333, 487, 547, 757, 817, 835, 937, 976
MfeI CAATTG 2 cut(s) 551, 787
MhlI GDGCHC 2 cut(s) 271, 588
MluCI AATT 3 cut(s) 175, 551, 787
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 2 cut(s) 89, 654
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 3 cut(s) 174, 719, 1060
MslI CAYNNNNRTG 3 cut(s) 99, 511, 803
MspI CCGG 1 cut(s) 998
MspR9I CCNGG 3 cut(s) 291, 665, 951
MunI CAATTG 2 cut(s) 551, 787
MvaI CCWGG 3 cut(s) 291, 665, 951
MvnI CGCG 2 cut(s) 577, 579
MwoI GCNNNNNNNGC 4 cut(s) 111, 275, 404, 583
NcoI CCATGG 2 cut(s) 94, 693
NdeII GATC 9 cut(s) 309, 333, 487, 547, 757, 817, 835, 937, 976
NmuCI GTSAC 2 cut(s) 5, 281
NspI RCATGY 2 cut(s) 516, 742
NspV TTCGAA 1 cut(s) 349
PaeI GCATGC 1 cut(s) 516
PaqCI CACCTGC 1 cut(s) 294
PauI GCGCGC 1 cut(s) 575
PceI AGGCCT 1 cut(s) 187
PciSI GCTCTTC 2 cut(s) 593, 675
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 2 cut(s) 346, 643
PflFI GACNNNGTC 1 cut(s) 599
PflMI CCANNNNNTGG 1 cut(s) 598
PkrI GCNGC 3 cut(s) 20, 158, 714
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PshBI ATTAAT 2 cut(s) 174, 719
PsiI TTATAA 1 cut(s) 420
Psp124BI GAGCTC 1 cut(s) 588
Psp6I CCWGG 3 cut(s) 289, 663, 949
PspEI GGTNACC 1 cut(s) 5
PspFI CCCAGC 3 cut(s) 131, 432, 870
PspGI CCWGG 3 cut(s) 289, 663, 949
PspPI GGNCC 1 cut(s) 947
PstI CTGCAG 2 cut(s) 161, 613
PsyI GACNNNGTC 1 cut(s) 599
PteI GCGCGC 1 cut(s) 575
RsaI GTAC 3 cut(s) 774, 881, 996
RsaNI GTAC 3 cut(s) 773, 880, 995
RseI CAYNNNNRTG 3 cut(s) 99, 511, 803
SacI GAGCTC 1 cut(s) 588
SapI GCTCTTC 2 cut(s) 593, 675
SaqAI TTAA 3 cut(s) 174, 719, 1060
SatI GCNGC 3 cut(s) 19, 157, 713
Sau3AI GATC 9 cut(s) 309, 333, 487, 547, 757, 817, 835, 937, 976
Sau96I GGNCC 1 cut(s) 947
ScaI AGTACT 2 cut(s) 774, 881
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 3 cut(s) 291, 665, 951
SduI GDGCHC 2 cut(s) 271, 588
SfaNI GCATC 2 cut(s) 476, 664
SfcI CTRYAG 3 cut(s) 157, 609, 1014
SfuI TTCGAA 1 cut(s) 349
SmiMI CAYNNNNRTG 3 cut(s) 99, 511, 803
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
SphI GCATGC 1 cut(s) 516
Sse9I AATT 3 cut(s) 175, 551, 787
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 1 cut(s) 713
SspI AATATT 1 cut(s) 988
SspMI CTAG 2 cut(s) 440, 897
SstI GAGCTC 1 cut(s) 588
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 3 cut(s) 289, 663, 949
StyI CCWWGG 2 cut(s) 94, 693
TaaI ACNGT 3 cut(s) 394, 879, 1030
TaiI ACGT 1 cut(s) 636
TaqI TCGA 5 cut(s) 349, 371, 377, 428, 546
TasI AATT 3 cut(s) 175, 551, 787
TatI WGTACW 2 cut(s) 772, 879
TauI GCSGC 1 cut(s) 715
TfiI GAWTC 2 cut(s) 346, 643
Tru1I TTAA 3 cut(s) 174, 719, 1060
Tru9I TTAA 3 cut(s) 174, 719, 1060
TscAI CASTG 2 cut(s) 544, 618
TseFI GTSAC 2 cut(s) 5, 281
TseI GCWGC 2 cut(s) 18, 156
Tsp45I GTSAC 2 cut(s) 5, 281
TspDTI ATGAA 8 cut(s) 233, 495, 514, 767, 870, 935, 996, 1041
TspRI CASTG 2 cut(s) 544, 618
Tth111I GACNNNGTC 1 cut(s) 599
Van91I CCANNNNNTGG 1 cut(s) 598
VspI ATTAAT 2 cut(s) 174, 719
XceI RCATGY 2 cut(s) 516, 742
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 2 cut(s) 440, 897
ZrmI AGTACT 2 cut(s) 774, 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.