Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

17615600 .. 17618000

Gene Structure 2401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1110800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGGGCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGGCTTTGGTCCCCTGAGGAAGATGAGAAACTCATCAGATACATCACTACTCATGGATATGGCTGTTGGAGTGAAGTCCCAGAAAAAGCTGGGCTTCAAAGGTGTGGTAAAAGCTGCCGCTTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGGAGATTTACTCCAGAAGAAGAGAAATTGATTATTAGCCTCCATGGGGTTGTAGGCAACAGATGGGCTCATATAGCAAGCCATCTGCCCGGAAGAACAGACAACGAGATCAAGAACTACTGGAATTCATGGATCAAAAAGAAGATTCGGAAGCCTTCCACACCTTCAAGTGCTTCCACAATAAGTCCACCACCTAGTGTTGATCATCATCAGCATATAATTCTCCAATTGGGTAATTACAATAACCAACTAGATTTTGCACACCAAGATTTGGGTACAACCCTAAAGCCTCAAGCTCAAGAAACCCTATTTTCTTCAACATGCCCTATGTTCATGTTTGATACAAGTACTACTGCCAATATTGAAGCAGCTCAAGAAAGTTACAATGCTCGCGGGGAGATTTTCCAAGACATGATTGTCGCAACGGATTTGAATTCATCTGAGCCGTGGAATTTGAATCAGCATCAAGTCCAGGCTTTCCCACCTCCGGCAACAATGTCATTTAATACTACAAATAGTAGTACTAATAATGTTACCATGGACACAAACTATTTGCCACCGTTGATCGAGAACATGGACAACATGGTACCGAACGTTGATCATCATCATCAATCTTGTAACAATATTGATGAGGAGGGAGATCATGATCAGATGGCCTTGGAGTGCTTAATGCAAAGGCATGAGTTGAATGAATGGGTTGTTTCCCAGCAACAATGTTCTAACTTTCTATTTTGGGACAATCTTGTTGATGATCAAGCGATAGTACTTGTTGGACAAGATCATGGGATTGCACATCCTGCTTCATCAAACGCAGTACAACTGTCTTCTTTTCCTCCATCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

349

Amino Acids

39.55

Weight (kDa)

5.72

Isoelectric Point (pI)

53.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	7.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	8.6e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 118	8.4e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
Acc65I	GGTACC	1 cut(s)	787
AccB1I	GGYRCC	2 cut(s)	6, 787
AccB7I	CCANNNNNTGG	1 cut(s)	472
AccII	CGCG	1 cut(s)	594
AciI	CCGC	2 cut(s)	160, 594
AclI	AACGTT	1 cut(s)	795
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	3 cut(s)	325, 634, 652
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	6 cut(s)	478, 550, 724, 789, 966, 1017
AfiI	CCNNNNNNNGG	4 cut(s)	31, 247, 472, 688
AgsI	TTSAA	7 cut(s)	140, 369, 519, 566, 634, 658, 889
AjnI	CCWGG	1 cut(s)	672
AluBI	AGCT	4 cut(s)	131, 156, 497, 572
AluI	AGCT	4 cut(s)	131, 156, 497, 572
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	2 cut(s)	185, 855
ApeKI	GCWGC	3 cut(s)	18, 156, 569
ApoI	RAATTY	3 cut(s)	325, 634, 652
AseI	ATTAAT	1 cut(s)	174
Asp718I	GGTACC	1 cut(s)	787
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	2 cut(s)	6, 787
BanII	GRGCYC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	1017
BbvI	GCAGC	3 cut(s)	5, 143, 581
BccI	CCATC	5 cut(s)	162, 258, 291, 847, 1045
BceAI	ACGGC	1 cut(s)	631
BciT130I	CCWGG	1 cut(s)	674
BclI	TGATCA	4 cut(s)	403, 799, 847, 952
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	2 cut(s)	396, 452
BisI	GCNGC	4 cut(s)	19, 157, 160, 570
BlsI	GCNGC	4 cut(s)	20, 158, 161, 571
BmcAI	AGTACT	3 cut(s)	550, 724, 966
Bme1390I	CCNGG	2 cut(s)	291, 674
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	3 cut(s)	8, 53, 789
BmrFI	CCNGG	2 cut(s)	291, 674
BmsI	GCATC	1 cut(s)	673
BpiI	GAAGAC	1 cut(s)	1017
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	1 cut(s)	198
BpuEI	CTTGAG	4 cut(s)	184, 477, 483, 558
BpuMI	CCSGG	1 cut(s)	291
BsaBI	GATNNNNATC	3 cut(s)	408, 804, 846
BsaJI	CCNNGG	4 cut(s)	244, 647, 738, 858
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 247, 472, 688
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	3 cut(s)	408, 804, 846
BseBI	CCWGG	1 cut(s)	674
BseDI	CCNNGG	4 cut(s)	244, 647, 738, 858
BseGI	GGATG	1 cut(s)	994
BseJI	GATNNNNATC	3 cut(s)	408, 804, 846
BseLI	CCNNNNNNNGG	4 cut(s)	31, 247, 472, 688
BseMII	CTCAG	2 cut(s)	48, 633
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	1 cut(s)	848
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	5, 143, 581
BseYI	CCCAGC	2 cut(s)	131, 906
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	2 cut(s)	187, 857
BshNI	GGYRCC	2 cut(s)	6, 787
BsiSI	CCGG	2 cut(s)	291, 689
BslFI	GGGAC	3 cut(s)	37, 104, 950
BslI	CCNNNNNNNGG	4 cut(s)	31, 247, 472, 688
BsmFI	GGGAC	3 cut(s)	37, 104, 950
BsnI	GGCC	2 cut(s)	187, 857
Bsp1286I	GDGCHC	2 cut(s)	9, 271
Bsp143I	GATC	9 cut(s)	309, 333, 403, 765, 799, 841, 847, 952, 979
Bsp19I	CCATGG	2 cut(s)	244, 738
BspACI	CCGC	2 cut(s)	160, 594
BspANI	GGCC	2 cut(s)	187, 857
BspCNI	CTCAG	2 cut(s)	49, 634
BspFNI	CGCG	1 cut(s)	594
BspHI	TCATGA	1 cut(s)	844
BspLI	GGNNCC	3 cut(s)	8, 53, 789
BspPI	GGATC	1 cut(s)	341
BspT107I	GGYRCC	2 cut(s)	6, 787
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	4 cut(s)	244, 647, 738, 858
BssMI	GATC	9 cut(s)	309, 333, 403, 765, 799, 841, 847, 952, 979
BssT1I	CCWWGG	3 cut(s)	244, 738, 858
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	2 cut(s)	762, 1023
Bst6I	CTCTTC	2 cut(s)	193, 216
BstAPI	GCANNNNNTGC	1 cut(s)	998
BstC8I	GCNNGC	2 cut(s)	280, 592
BstDEI	CTNAG	2 cut(s)	57, 642
BstDSI	CCRYGG	3 cut(s)	244, 647, 738
BstF5I	GGATG	1 cut(s)	994
BstFNI	CGCG	1 cut(s)	594
BstKTI	GATC	9 cut(s)	312, 336, 406, 768, 802, 844, 850, 955, 982
BstMBI	GATC	9 cut(s)	309, 333, 403, 765, 799, 841, 847, 952, 979
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 998
BstNI	CCWGG	1 cut(s)	674
BstNSI	RCATGY	1 cut(s)	525
BstSCI	CCNGG	2 cut(s)	289, 672
BstSLI	GKGCMC	1 cut(s)	9
BstUI	CGCG	1 cut(s)	594
BstV1I	GCAGC	3 cut(s)	5, 143, 581
BstV2I	GAAGAC	1 cut(s)	1017
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	2 cut(s)	187, 857
BtgI	CCRYGG	3 cut(s)	244, 647, 738
BtsCI	GGATG	1 cut(s)	994
Cac8I	GCNNGC	2 cut(s)	280, 592
CciI	TCATGA	1 cut(s)	844
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	6 cut(s)	477, 549, 723, 788, 965, 1016
CviQI	GTAC	6 cut(s)	477, 549, 723, 788, 965, 1016
DdeI	CTNAG	2 cut(s)	57, 642
DpnI	GATC	9 cut(s)	311, 335, 405, 767, 801, 843, 849, 954, 981
DpnII	GATC	9 cut(s)	309, 333, 403, 765, 799, 841, 847, 952, 979
DraIII	CACNNNGTG	1 cut(s)	398
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
Eam1104I	CTCTTC	2 cut(s)	193, 216
EarI	CTCTTC	2 cut(s)	193, 216
Eco130I	CCWWGG	3 cut(s)	244, 738, 858
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	51
Eco81I	CCTNAGG	1 cut(s)	57
EcoRI	GAATTC	2 cut(s)	325, 634
EcoRII	CCWGG	1 cut(s)	672
EcoT14I	CCWWGG	3 cut(s)	244, 738, 858
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	3 cut(s)	244, 738, 858
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	3 cut(s)	37, 104, 950
FauI	CCCGC	1 cut(s)	587
FbaI	TGATCA	4 cut(s)	403, 799, 847, 952
Fnu4HI	GCNGC	4 cut(s)	19, 157, 160, 570
FokI	GGATG	1 cut(s)	981
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	4 cut(s)	19, 157, 160, 570
FspBI	CTAG	2 cut(s)	396, 452
GluI	GCNGC	4 cut(s)	19, 157, 160, 570
GsaI	CCCAGC	2 cut(s)	135, 910
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	187, 857
HapII	CCGG	2 cut(s)	291, 689
HinfI	GANTC	2 cut(s)	346, 658
HpaII	CCGG	2 cut(s)	291, 689
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	4 cut(s)	80, 351, 643, 852
Hpy188III	TCNNGA	6 cut(s)	215, 313, 500, 575, 769, 845
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	3 cut(s)	25, 366, 375
HpyCH4III	ACNGT	2 cut(s)	762, 1023
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	4 cut(s)	21, 461, 874, 992
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 998
HpyF3I	CTNAG	2 cut(s)	57, 642
HpySE526I	ACGT	1 cut(s)	795
KpnI	GGTACC	1 cut(s)	791
Ksp22I	TGATCA	4 cut(s)	403, 799, 847, 952
Kzo9I	GATC	9 cut(s)	309, 333, 403, 765, 799, 841, 847, 952, 979
Lsp1109I	GCAGC	3 cut(s)	5, 143, 581
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	2 cut(s)	396, 452
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	3 cut(s)	581, 733, 818
MalI	GATC	9 cut(s)	311, 335, 405, 767, 801, 843, 849, 954, 981
MboI	GATC	9 cut(s)	309, 333, 403, 765, 799, 841, 847, 952, 979
MboII	GAAGA	8 cut(s)	74, 210, 230, 233, 306, 355, 507, 1017
MfeI	CAATTG	1 cut(s)	428
MhlI	GDGCHC	2 cut(s)	9, 271
MluCI	AATT	8 cut(s)	175, 227, 325, 420, 428, 436, 634, 652
MmeI	TCCRAC	2 cut(s)	89, 952
MseI	TTAA	4 cut(s)	36, 174, 705, 869
MslI	CAYNNNNRTG	2 cut(s)	99, 1042
MspI	CCGG	2 cut(s)	291, 689
MspR9I	CCNGG	2 cut(s)	291, 674
MunI	CAATTG	1 cut(s)	428
MvaI	CCWGG	1 cut(s)	674
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	2 cut(s)	275, 998
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	2 cut(s)	244, 738
NdeII	GATC	9 cut(s)	309, 333, 403, 765, 799, 841, 847, 952, 979
NlaIV	GGNNCC	3 cut(s)	8, 53, 789
NspI	RCATGY	1 cut(s)	525
PagI	TCATGA	1 cut(s)	844
PceI	AGGCCT	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	346, 658
PflMI	CCANNNNNTGG	1 cut(s)	472
PkrI	GCNGC	4 cut(s)	20, 158, 161, 571
PshBI	ATTAAT	1 cut(s)	174
Psp1406I	AACGTT	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	672
PspFI	CCCAGC	2 cut(s)	131, 906
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	3 cut(s)	8, 53, 789
PspPI	GGNCC	1 cut(s)	51
RsaI	GTAC	6 cut(s)	478, 550, 724, 789, 966, 1017
RsaNI	GTAC	6 cut(s)	477, 549, 723, 788, 965, 1016
RseI	CAYNNNNRTG	2 cut(s)	99, 1042
SaqAI	TTAA	4 cut(s)	36, 174, 705, 869
SatI	GCNGC	4 cut(s)	19, 157, 160, 570
Sau3AI	GATC	9 cut(s)	309, 333, 403, 765, 799, 841, 847, 952, 979
Sau96I	GGNCC	1 cut(s)	51
ScaI	AGTACT	3 cut(s)	550, 724, 966
ScrFI	CCNGG	2 cut(s)	291, 674
SduI	GDGCHC	2 cut(s)	9, 271
SfaNI	GCATC	1 cut(s)	673
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	2 cut(s)	99, 1042
SmlI	CTYRAG	4 cut(s)	163, 492, 498, 573
SmoI	CTYRAG	4 cut(s)	163, 492, 498, 573
Sse9I	AATT	8 cut(s)	175, 227, 325, 420, 428, 436, 634, 652
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	2 cut(s)	160, 594
SspI	AATATT	2 cut(s)	562, 826
SspMI	CTAG	2 cut(s)	396, 452
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	289, 672
StyI	CCWWGG	3 cut(s)	244, 738, 858
TaaI	ACNGT	2 cut(s)	762, 1023
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	1 cut(s)	768
TasI	AATT	8 cut(s)	175, 227, 325, 420, 428, 436, 634, 652
TatI	WGTACW	4 cut(s)	548, 722, 964, 1015
TauI	GCSGC	1 cut(s)	162
TfiI	GAWTC	2 cut(s)	346, 658
Tru1I	TTAA	4 cut(s)	36, 174, 705, 869
Tru9I	TTAA	4 cut(s)	36, 174, 705, 869
TseI	GCWGC	3 cut(s)	18, 156, 569
TspDTI	ATGAA	5 cut(s)	318, 523, 627, 906, 993
TspGWI	ACGGA	1 cut(s)	641
Van91I	CCANNNNNTGG	1 cut(s)	472
VpaK11BI	GGWCC	1 cut(s)	51
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	3 cut(s)	325, 634, 652
XceI	RCATGY	1 cut(s)	525
XspI	CTAG	2 cut(s)	396, 452
ZrmI	AGTACT	3 cut(s)	550, 724, 966

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.