Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

11215447 .. 11216869

Gene Structure 1423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G105800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGGCACCATTATTGCTGCAAACAACGAAAGGTTAAGAAAGGCCTTTGGTCCCCTGAGGAAGATGAAAAGCTCATTAGATACATCACCACATATGGCCATTGCTGCTGGAGAAAAGTCCCTGAGCAAGCTGGGCTTCAAAGGTGTGGCAAGAGCTGTCGCTTGAGATGGCTCAATTACTTGAGGCCTGATATCAAAAGAGGAGGGTTTACACCAGAGGAGGAGAAATTGATTATTAGACTTCATGGTGTTGTAGGAAACAGATGGGCGCATATAGCAAAATGTCTGCCTGGAAGAACTGACAACGAGATAAAGAACTACTGGAATTCATGGATTAAAAAGAAGCTAGAGAAGCCTTCTTCACCACCAACCACATCTCCTCCTACTATCGATCATCACCAGCAGCACAATTACCAAATGGTTTGTAATTTCCCAAACCATCAAGATTTTGTGAACCAAAATTTCATGACAAAGCCTAGGGATCAAACCCTATACCCTTCTCCCTTCCCCCCATTCATGTTCGACGCTGCTTCAGCGGATGACATTCAGGCAAACAATATCAATGCACAAGCAGCTGAGCACTTTCCTATCGGTGTTTCGAATTCGAGAAATGGAACGTGGATTTTGGATCAACCGCAGCATCATCATCAAGTCCAAGCCCTTCCCTCTTCTACGTCACCATTTACAAACATTAATATGGATGCACATTTTCTGCCTGCCCTCGTAGGACCAACCATTGGAAACAATAACATGGTTCCTATCGAAGTGGAATCATGTAACAATATTGATGAGGAAGGAAAGATTTCAATGGAGTGCTTGCAGAGTTCAACTCAGGAGCTGAATGCATTGGTTCGCCCTCGCCAGGCTCAACATTGTTCATCAAGCAGCTTCCATTTTTGGGACAGTGTTGAAGCACCATCTTCATCTAACATGAGTTCAGCTAACATATTGTCTTCTTTTCCATCATATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

325

Amino Acids

36.92

Weight (kDa)

8.0

Isoelectric Point (pI)

67.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	6
AccB7I	CCANNNNNTGG	1 cut(s)	737
AciI	CCGC	2 cut(s)	536, 635
AclWI	GGATC	2 cut(s)	489, 636
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	3 cut(s)	325, 460, 601
AcuI	CTGAAG	1 cut(s)	516
AfiI	CCNNNNNNNGG	3 cut(s)	737, 862, 898
AgsI	TTSAA	4 cut(s)	140, 807, 828, 911
AjnI	CCWGG	2 cut(s)	289, 861
AluBI	AGCT	8 cut(s)	73, 131, 156, 346, 575, 838, 888, 941
AluI	AGCT	8 cut(s)	73, 131, 156, 346, 575, 838, 888, 941
Alw21I	GWGCWC	1 cut(s)	582
AlwI	GGATC	2 cut(s)	489, 636
AlwNI	CAGNNNCTG	1 cut(s)	838
AoxI	GGCC	3 cut(s)	43, 97, 185
ApeKI	GCWGC	7 cut(s)	18, 105, 403, 527, 572, 637, 885
ApoI	RAATTY	3 cut(s)	325, 460, 601
AseI	ATTAAT	1 cut(s)	693
Asp700I	GAANNNNTTC	1 cut(s)	802
AspA2I	CCTAGG	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	2 cut(s)	51, 728
AsuHPI	GGTGA	4 cut(s)	79, 354, 389, 669
AsuII	TTCGAA	1 cut(s)	599
AvaII	GGWCC	2 cut(s)	51, 728
AvrII	CCTAGG	1 cut(s)	476
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	6
BbsI	GAAGAC	1 cut(s)	945
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	7 cut(s)	5, 92, 415, 514, 584, 649, 897
BccI	CCATC	5 cut(s)	162, 258, 447, 925, 970
BciT130I	CCWGG	2 cut(s)	291, 863
BfaI	CTAG	2 cut(s)	347, 477
BisI	GCNGC	7 cut(s)	19, 106, 404, 528, 573, 638, 886
BlnI	CCTAGG	1 cut(s)	476
BlpI	GCTNAGC	1 cut(s)	576
BlsI	GCNGC	7 cut(s)	20, 107, 405, 529, 574, 639, 887
Bme1390I	CCNGG	2 cut(s)	291, 863
Bme18I	GGWCC	2 cut(s)	51, 728
BmgT120I	GGNCC	2 cut(s)	51, 728
BmiI	GGNNCC	3 cut(s)	8, 53, 756
BmrFI	CCNGG	2 cut(s)	291, 863
BmsI	GCATC	2 cut(s)	649, 691
BpiI	GAAGAC	1 cut(s)	945
BplI	GAGNNNNNCTC	2 cut(s)	814, 846
BpmI	CTGGAG	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu1102I	GCTNAGC	1 cut(s)	576
Bpu14I	TTCGAA	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	184, 202
Bsa29I	ATCGAT	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	476
BsaXI	ACNNNNNCTCC	4 cut(s)	361, 364, 391, 394
Bsc4I	CCNNNNNNNGG	3 cut(s)	737, 862, 898
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	291, 863
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	2 cut(s)	544, 706
BseLI	CCNNNNNNNGG	3 cut(s)	737, 862, 898
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	4 cut(s)	48, 114, 567, 845
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	4 cut(s)	216, 233, 236, 369
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	7 cut(s)	5, 92, 415, 514, 584, 649, 897
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	3 cut(s)	45, 99, 187
BshNI	GGYRCC	1 cut(s)	6
BshVI	ATCGAT	1 cut(s)	390
BsiHKAI	GWGCWC	1 cut(s)	582
BslFI	GGGAC	3 cut(s)	37, 104, 914
BslI	CCNNNNNNNGG	3 cut(s)	737, 862, 898
BsmFI	GGGAC	3 cut(s)	37, 104, 914
BsmI	GAATGC	1 cut(s)	847
BsnI	GGCC	3 cut(s)	45, 99, 187
Bsp119I	TTCGAA	1 cut(s)	599
Bsp1286I	GDGCHC	2 cut(s)	9, 582
Bsp143I	GATC	3 cut(s)	391, 481, 628
Bsp1720I	GCTNAGC	1 cut(s)	576
BspACI	CCGC	2 cut(s)	536, 635
BspANI	GGCC	3 cut(s)	45, 99, 187
BspCNI	CTCAG	4 cut(s)	49, 115, 568, 844
BspDI	ATCGAT	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	465
BspLI	GGNNCC	3 cut(s)	8, 53, 756
BspPI	GGATC	2 cut(s)	489, 636
BspT104I	TTCGAA	1 cut(s)	599
BspT107I	GGYRCC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	476
BssMI	GATC	3 cut(s)	391, 481, 628
BssT1I	CCWWGG	1 cut(s)	476
Bst2UI	CCWGG	2 cut(s)	291, 863
Bst4CI	ACNGT	1 cut(s)	905
Bst6I	CTCTTC	1 cut(s)	673
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	129, 717, 818
BstDEI	CTNAG	4 cut(s)	57, 123, 576, 831
BstF5I	GGATG	2 cut(s)	544, 706
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	3 cut(s)	394, 484, 631
BstMBI	GATC	3 cut(s)	391, 481, 628
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 133, 275, 352, 533, 572
BstNI	CCWGG	2 cut(s)	291, 863
BstSCI	CCNGG	2 cut(s)	289, 861
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	7 cut(s)	5, 92, 415, 514, 584, 649, 897
BstV2I	GAAGAC	1 cut(s)	945
Bsu15I	ATCGAT	1 cut(s)	390
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	45, 99, 187
BsuTUI	ATCGAT	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	544, 706
BtsIMutI	CAGTG	1 cut(s)	910
Cac8I	GCNNGC	3 cut(s)	129, 717, 818
CaiI	CAGNNNCTG	1 cut(s)	838
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	51, 728
ClaI	ATCGAT	1 cut(s)	390
CseI	GACGC	1 cut(s)	533
CviAII	CATG	7 cut(s)	245, 330, 466, 517, 751, 774, 931
DdeI	CTNAG	4 cut(s)	57, 123, 576, 831
DpnI	GATC	3 cut(s)	393, 483, 630
DpnII	GATC	3 cut(s)	391, 481, 628
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	673
EarI	CTCTTC	1 cut(s)	673
Eco130I	CCWWGG	1 cut(s)	476
Eco147I	AGGCCT	2 cut(s)	45, 187
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	51, 728
Eco57I	CTGAAG	1 cut(s)	516
Eco81I	CCTNAGG	1 cut(s)	57
EcoRI	GAATTC	2 cut(s)	325, 601
EcoRII	CCWGG	2 cut(s)	289, 861
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	476
EcoT22I	ATGCAT	1 cut(s)	847
ErhI	CCWWGG	1 cut(s)	476
FaeI	CATG	7 cut(s)	248, 333, 469, 520, 754, 777, 934
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	3 cut(s)	37, 104, 914
FatI	CATG	7 cut(s)	244, 329, 465, 516, 750, 773, 930
FauNDI	CATATG	1 cut(s)	94
Fnu4HI	GCNGC	7 cut(s)	19, 106, 404, 528, 573, 638, 886
FokI	GGATG	2 cut(s)	551, 713
Fsp4HI	GCNGC	7 cut(s)	19, 106, 404, 528, 573, 638, 886
FspBI	CTAG	2 cut(s)	347, 477
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	7 cut(s)	19, 106, 404, 528, 573, 638, 886
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	130
HaeIII	GGCC	3 cut(s)	45, 99, 187
HgaI	GACGC	1 cut(s)	533
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	7 cut(s)	248, 333, 469, 520, 754, 777, 934
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	1 cut(s)	770
HphI	GGTGA	4 cut(s)	79, 354, 389, 669
Hpy166II	GTNNAC	2 cut(s)	210, 454
Hpy188III	TCNNGA	4 cut(s)	443, 466, 606, 833
Hpy8I	GTNNAC	2 cut(s)	210, 454
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	5 cut(s)	366, 507, 514, 671, 788
HpyCH4III	ACNGT	1 cut(s)	905
HpyCH4IV	ACGT	2 cut(s)	617, 674
HpyCH4V	TGCA	5 cut(s)	21, 566, 704, 820, 845
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 133, 275, 352, 533, 572
HpyF3I	CTNAG	4 cut(s)	57, 123, 576, 831
HpySE526I	ACGT	2 cut(s)	617, 674
Hsp92II	CATG	7 cut(s)	248, 333, 469, 520, 754, 777, 934
HspAI	GCGC	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	391, 481, 628
LmnI	GCTCC	1 cut(s)	835
Lsp1109I	GCAGC	7 cut(s)	5, 92, 415, 514, 584, 649, 897
LweI	GCATC	2 cut(s)	649, 691
MaeI	CTAG	2 cut(s)	347, 477
MaeII	ACGT	2 cut(s)	617, 674
MaeIII	GTNAC	2 cut(s)	675, 776
MalI	GATC	3 cut(s)	393, 483, 630
MboI	GATC	3 cut(s)	391, 481, 628
MboII	GAAGA	6 cut(s)	74, 306, 351, 660, 912, 945
MhlI	GDGCHC	2 cut(s)	9, 582
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	7 cut(s)	175, 227, 325, 409, 427, 460, 601
MluNI	TGGCCA	1 cut(s)	99
Mox20I	TGGCCA	1 cut(s)	99
Mph1103I	ATGCAT	1 cut(s)	847
MroXI	GAANNNNTTC	1 cut(s)	802
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	3 cut(s)	36, 336, 693
MslI	CAYNNNNRTG	1 cut(s)	695
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	536, 575
MspR9I	CCNGG	2 cut(s)	291, 863
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	2 cut(s)	291, 863
MwoI	GCNNNNNNNGC	6 cut(s)	105, 133, 275, 352, 533, 572
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	3 cut(s)	391, 481, 628
NlaIII	CATG	7 cut(s)	248, 333, 469, 520, 754, 777, 934
NlaIV	GGNNCC	3 cut(s)	8, 53, 756
NmuCI	GTSAC	1 cut(s)	675
NsiI	ATGCAT	1 cut(s)	847
NspV	TTCGAA	1 cut(s)	599
PagI	TCATGA	1 cut(s)	465
PceI	AGGCCT	2 cut(s)	45, 187
PctI	GAATGC	1 cut(s)	847
PdmI	GAANNNNTTC	1 cut(s)	802
PfeI	GAWTC	1 cut(s)	770
PflMI	CCANNNNNTGG	1 cut(s)	737
PkrI	GCNGC	7 cut(s)	20, 107, 405, 529, 574, 639, 887
PshBI	ATTAAT	1 cut(s)	693
Psp6I	CCWGG	2 cut(s)	289, 861
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	289, 861
PspN4I	GGNNCC	3 cut(s)	8, 53, 756
PspPI	GGNCC	2 cut(s)	51, 728
PstNI	CAGNNNCTG	1 cut(s)	838
PvuII	CAGCTG	1 cut(s)	575
RseI	CAYNNNNRTG	1 cut(s)	695
SaqAI	TTAA	3 cut(s)	36, 336, 693
SatI	GCNGC	7 cut(s)	19, 106, 404, 528, 573, 638, 886
Sau3AI	GATC	3 cut(s)	391, 481, 628
Sau96I	GGNCC	2 cut(s)	51, 728
ScrFI	CCNGG	2 cut(s)	291, 863
SduI	GDGCHC	2 cut(s)	9, 582
SfaNI	GCATC	2 cut(s)	649, 691
SfuI	TTCGAA	1 cut(s)	599
SinI	GGWCC	2 cut(s)	51, 728
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	2 cut(s)	163, 181
SmoI	CTYRAG	2 cut(s)	163, 181
Sse9I	AATT	7 cut(s)	175, 227, 325, 409, 427, 460, 601
SseBI	AGGCCT	2 cut(s)	45, 187
SsiI	CCGC	2 cut(s)	536, 635
SspI	AATATT	1 cut(s)	784
SspMI	CTAG	2 cut(s)	347, 477
StuI	AGGCCT	2 cut(s)	45, 187
StyD4I	CCNGG	2 cut(s)	289, 861
StyI	CCWWGG	1 cut(s)	476
TaaI	ACNGT	1 cut(s)	905
TaiI	ACGT	2 cut(s)	620, 677
TaqI	TCGA	5 cut(s)	390, 522, 599, 605, 762
TasI	AATT	7 cut(s)	175, 227, 325, 409, 427, 460, 601
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	3 cut(s)	36, 336, 693
Tru9I	TTAA	3 cut(s)	36, 336, 693
TscAI	CASTG	1 cut(s)	910
TseFI	GTSAC	1 cut(s)	675
TseI	GCWGC	7 cut(s)	18, 105, 403, 527, 572, 637, 885
Tsp45I	GTSAC	1 cut(s)	675
TspDTI	ATGAA	7 cut(s)	81, 233, 318, 454, 505, 867, 912
TspRI	CASTG	1 cut(s)	910
Van91I	CCANNNNNTGG	1 cut(s)	737
VpaK11BI	GGWCC	2 cut(s)	51, 728
VspI	ATTAAT	1 cut(s)	693
XapI	RAATTY	3 cut(s)	325, 460, 601
XmaJI	CCTAGG	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	802
XspI	CTAG	2 cut(s)	347, 477
Zsp2I	ATGCAT	1 cut(s)	847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.