Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Forward (+)

12489930 .. 12490394

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG161700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCATGTCTTAATCCAAACAACCAAGATCATATTGTGAATCAAACTTTCATTGCAAGGCCGTCTGCATACCCCCTATATATGTTTGAGGCTGCTTCACTTGATGAGGGTACTACTCGTGCAAACAACATTAATATCAATGTACATGTAGATCAGCATTTCCCACTCAACGTGAACTCGAACAATCTTGGGGCATGGATTTTGGATCAGCATAATGTTCAACCCCTTCCTTCTACAGCACCATTTACAAACATGGATGCAAATCTGTTAATGCCATCCCTCATAGGAAGTACTACTACTGTTAATGCAAACATGGTTGAAGTGGAATCTTGTAGCAATATTGATGAAGAAGGTGATATTTCAATGGAGTGCTTGCATAGTCATCAGGATTTGATTGCAGTATACTACGTAGTTCATTCCCGGCAACAGCAACCGTGTTCGAACTTTCCATTTTTGCTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

154

Amino Acids

17.1

Weight (kDa)

4.53

Isoelectric Point (pI)

61.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	402
AclWI	GGATC	1 cut(s)	213
AfaI	GTAC	3 cut(s)	112, 144, 292
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	221, 320, 363
AlwI	GGATC	1 cut(s)	213
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	92
AseI	ATTAAT	1 cut(s)	132
AsuC2I	CCSGG	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	365
AsuII	TTCGAA	1 cut(s)	440
BarI	GAAGNNNNNNTAC	2 cut(s)	280, 312
BauI	CACGAG	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	46
BcnI	CCSGG	1 cut(s)	421
BfmI	CTRYAG	1 cut(s)	234
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmcAI	AGTACT	1 cut(s)	292
Bme1390I	CCNGG	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	421
BmsI	GCATC	1 cut(s)	247
Bpu14I	TTCGAA	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	421
BsaAI	YACGTR	1 cut(s)	409
BsaBI	GATNNNNATC	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	261
BseGI	GGATG	2 cut(s)	262, 275
BseJI	GATNNNNATC	1 cut(s)	261
BseMI	GCAATG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	457
BshFI	GGCC	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	421
BsnI	GGCC	1 cut(s)	61
Bsp119I	TTCGAA	1 cut(s)	440
Bsp1407I	TGTACA	1 cut(s)	142
Bsp143I	GATC	3 cut(s)	28, 151, 205
BspANI	GGCC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	213
BspT104I	TTCGAA	1 cut(s)	440
BsrDI	GCAATG	1 cut(s)	51
BsrGI	TGTACA	1 cut(s)	142
BssMI	GATC	3 cut(s)	28, 151, 205
BssNAI	GTATAC	1 cut(s)	403
BssSI	CACGAG	1 cut(s)	117
Bst1107I	GTATAC	1 cut(s)	403
Bst2BI	CACGAG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	301, 435
BstAUI	TGTACA	1 cut(s)	142
BstBAI	YACGTR	1 cut(s)	409
BstBI	TTCGAA	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	374
BstF5I	GGATG	2 cut(s)	262, 275
BstKTI	GATC	3 cut(s)	31, 154, 208
BstMBI	GATC	3 cut(s)	28, 151, 205
BstNSI	RCATGY	2 cut(s)	9, 149
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	234
BstSNI	TACGTA	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	79
BstZ17I	GTATAC	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	61
BtsCI	GGATG	2 cut(s)	262, 275
Cac8I	GCNNGC	1 cut(s)	374
Csp6I	GTAC	3 cut(s)	111, 143, 291
CviAII	CATG	5 cut(s)	6, 146, 195, 253, 313
CviJI	RGCY	2 cut(s)	61, 92
CviKI_1	RGCY	2 cut(s)	61, 92
CviQI	GTAC	3 cut(s)	111, 143, 291
DpnI	GATC	3 cut(s)	30, 153, 207
DpnII	GATC	3 cut(s)	28, 151, 205
Eco105I	TACGTA	1 cut(s)	409
FaeI	CATG	5 cut(s)	9, 149, 198, 256, 316
FatI	CATG	5 cut(s)	5, 145, 194, 252, 312
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	2 cut(s)	262, 269
Fsp4HI	GCNGC	1 cut(s)	93
GluI	GCNGC	1 cut(s)	93
GsaI	CCCAGC	1 cut(s)	461
HaeIII	GGCC	1 cut(s)	61
HapII	CCGG	1 cut(s)	421
Hin1II	CATG	5 cut(s)	9, 149, 198, 256, 316
HinfI	GANTC	2 cut(s)	40, 326
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	2 cut(s)	175, 403
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	2 cut(s)	175, 403
HpyAV	CCTTC	3 cut(s)	236, 240, 344
HpyCH4III	ACNGT	2 cut(s)	301, 435
HpyCH4IV	ACGT	2 cut(s)	171, 408
HpyCH4V	TGCA	7 cut(s)	56, 68, 122, 260, 308, 376, 398
HpySE526I	ACGT	2 cut(s)	171, 408
Hsp92II	CATG	5 cut(s)	9, 149, 198, 256, 316
Kzo9I	GATC	3 cut(s)	28, 151, 205
LpnPI	CCDG	3 cut(s)	371, 434, 443
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	247
MaeII	ACGT	2 cut(s)	171, 408
MalI	GATC	3 cut(s)	30, 153, 207
MboI	GATC	3 cut(s)	28, 151, 205
MboII	GAAGA	1 cut(s)	359
MnlI	CCTC	3 cut(s)	82, 100, 290
MseI	TTAA	4 cut(s)	12, 132, 269, 303
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	1 cut(s)	421
NciI	CCSGG	1 cut(s)	421
NdeII	GATC	3 cut(s)	28, 151, 205
NlaIII	CATG	5 cut(s)	9, 149, 198, 256, 316
NspI	RCATGY	2 cut(s)	9, 149
NspV	TTCGAA	1 cut(s)	440
PciI	ACATGT	1 cut(s)	145
PfeI	GAWTC	2 cut(s)	40, 326
PkrI	GCNGC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	409
PscI	ACATGT	1 cut(s)	145
PshBI	ATTAAT	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	457
RsaI	GTAC	3 cut(s)	112, 144, 292
RsaNI	GTAC	3 cut(s)	111, 143, 291
SaqAI	TTAA	4 cut(s)	12, 132, 269, 303
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	3 cut(s)	28, 151, 205
ScaI	AGTACT	1 cut(s)	292
ScrFI	CCNGG	1 cut(s)	421
SetI	ASST	3 cut(s)	174, 355, 411
SfaNI	GCATC	1 cut(s)	247
SfcI	CTRYAG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	440
SnaBI	TACGTA	1 cut(s)	409
SspI	AATATT	1 cut(s)	340
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	2 cut(s)	301, 435
TaiI	ACGT	2 cut(s)	174, 411
TaqI	TCGA	2 cut(s)	179, 440
TatI	WGTACW	2 cut(s)	142, 290
TfiI	GAWTC	2 cut(s)	40, 326
Tru1I	TTAA	4 cut(s)	12, 132, 269, 303
Tru9I	TTAA	4 cut(s)	12, 132, 269, 303
TseI	GCWGC	1 cut(s)	92
TspDTI	ATGAA	3 cut(s)	40, 360, 404
VspI	ATTAAT	1 cut(s)	132
XceI	RCATGY	2 cut(s)	9, 149
XmiI	GTMKAC	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.