Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

2538884 .. 2539636

Gene Structure 753 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0035900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGCCAAGTGATTGTGAAGTATGGCAACCAGAAAATCCAGAAATCGACCAATTATACGACACTTCTTCTGCAGAACCCGAGTTCTTGATTGAGCTTTATGCTTCCATTGGTGAAAGTGTGCACTATGAAAAGTTCAATGCGCGGTGCCACCTTTTGACAGATAGTAGGACATCCTGGTCTGTAATATCCATCATGCTTTCTCAGGTGGGGGTTCCCTATCATGTTCAGCCATTAATGATCCAAAAGATTTCGACTGATGCTCACCAGATAGCCAATGATCCTGGTAACATGTACCTCAACACTATTCCGATGGTAGTGTCTCTTAGAGTACCTCAAGACGGATTGCCTGAATTTCCCGTCCATGAGATAAGGTTTGTGCCCACCAGTAAGTCAGCAATAGAAGAGATGCTTGAGTCGAGGGTGAAAATTGAAGGTTGCGAAGAGCAATGCATGGTATGTTTGGATGAAATTCTGATAGGGGGTGAAGCCACATGCATGCCTTGCTCGCATGTGTTTCACGAAAGTTGTATAGTGAATTGGCTGCAGAAGAGCAATCTTTGCCCATTGTGTCGATTTGAGATGCCTGCCGAATACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

199

Amino Acids

22.54

Weight (kDa)

4.55

Isoelectric Point (pI)

67.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-ANAPC11	PF12861	140 - 194	1.7e-06	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	148 - 191	6.3e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	149 - 191	7.4e-14	Ring finger domain
zf-C3HC4_2	PF13923	149 - 190	1.3e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	149 - 177	8.4e-09	RING-like zinc finger
zf-C3HC4	PF00097	150 - 190	2.9e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	144
AccII	CGCG	1 cut(s)	142
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	2 cut(s)	232, 272
AcsI	RAATTY	2 cut(s)	350, 468
AfaI	GTAC	2 cut(s)	293, 330
AfiI	CCNNNNNNNGG	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	136, 431
AjnI	CCWGG	2 cut(s)	173, 280
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	324
Alw44I	GTGCAC	1 cut(s)	119
AlwI	GGATC	2 cut(s)	232, 272
Ama87I	CYCGRG	1 cut(s)	77
ApaLI	GTGCAC	1 cut(s)	119
ApeKI	GCWGC	1 cut(s)	541
ApoI	RAATTY	2 cut(s)	350, 468
AseI	ATTAAT	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	142
AsuHPI	GGTGA	4 cut(s)	122, 254, 433, 494
AvaI	CYCGRG	1 cut(s)	77
BaeGI	GKGCMC	2 cut(s)	123, 381
BanI	GGYRCC	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	528
BccI	CCATC	2 cut(s)	197, 304
BciT130I	CCWGG	2 cut(s)	175, 282
BcoDI	GTCTC	1 cut(s)	324
BfmI	CTRYAG	2 cut(s)	69, 542
BisI	GCNGC	1 cut(s)	542
BlsI	GCNGC	1 cut(s)	543
Bme1390I	CCNGG	2 cut(s)	175, 282
BmeT110I	CYCGRG	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	146, 213
BmrFI	CCNGG	2 cut(s)	175, 282
BmsI	GCATC	3 cut(s)	247, 396, 570
BpuEI	CTTGAG	2 cut(s)	318, 431
Bsc4I	CCNNNNNNNGG	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	452
BseBI	CCWGG	2 cut(s)	175, 282
BseGI	GGATG	2 cut(s)	170, 469
BseLI	CCNNNNNNNGG	1 cut(s)	338
BseMI	GCAATG	1 cut(s)	452
BseMII	CTCAG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	384
BseSI	GKGCMC	2 cut(s)	123, 381
BseXI	GCAGC	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	144
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	338
BsmAI	GTCTC	1 cut(s)	324
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	123, 381
Bsp143I	GATC	2 cut(s)	237, 277
BspACI	CCGC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	146, 213
BspMAI	CTGCAG	2 cut(s)	73, 546
BspPI	GGATC	2 cut(s)	232, 272
BspQI	GCTCTTC	2 cut(s)	435, 542
BspT107I	GGYRCC	1 cut(s)	144
BsrDI	GCAATG	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	384
BssMI	GATC	2 cut(s)	237, 277
Bst2UI	CCWGG	2 cut(s)	175, 282
Bst6I	CTCTTC	3 cut(s)	396, 435, 542
BstAPI	GCANNNNNTGC	2 cut(s)	501, 558
BstC8I	GCNNGC	3 cut(s)	497, 506, 585
BstDEI	CTNAG	2 cut(s)	201, 323
BstF5I	GGATG	2 cut(s)	170, 469
BstFNI	CGCG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	142
BstKTI	GATC	2 cut(s)	240, 280
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	2 cut(s)	237, 277
BstMWI	GCNNNNNNNGC	4 cut(s)	501, 505, 558, 593
BstNI	CCWGG	2 cut(s)	175, 282
BstNSI	RCATGY	4 cut(s)	292, 495, 499, 512
BstSCI	CCNGG	2 cut(s)	173, 280
BstSFI	CTRYAG	2 cut(s)	69, 542
BstSLI	GKGCMC	2 cut(s)	123, 381
BstUI	CGCG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	528
BtsCI	GGATG	2 cut(s)	170, 469
Cac8I	GCNNGC	3 cut(s)	497, 506, 585
CfoI	GCGC	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	292, 329
CviAII	CATG	9 cut(s)	193, 221, 289, 362, 451, 492, 496, 509, 597
CviJI	RGCY	5 cut(s)	94, 229, 272, 488, 541
CviKI_1	RGCY	5 cut(s)	94, 229, 272, 488, 541
CviQI	GTAC	2 cut(s)	292, 329
DdeI	CTNAG	2 cut(s)	201, 323
DpnI	GATC	2 cut(s)	239, 279
DpnII	GATC	2 cut(s)	237, 277
DrdI	GACNNNNNNGTC	1 cut(s)	175
DseDI	GACNNNNNNGTC	1 cut(s)	175
Eam1104I	CTCTTC	3 cut(s)	396, 435, 542
EarI	CTCTTC	3 cut(s)	396, 435, 542
Eco88I	CYCGRG	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	173, 280
EcoT22I	ATGCAT	2 cut(s)	452, 497
FaeI	CATG	9 cut(s)	196, 224, 292, 365, 454, 495, 499, 512, 600
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	9 cut(s)	192, 220, 288, 361, 450, 491, 495, 508, 596
Fnu4HI	GCNGC	1 cut(s)	542
FokI	GGATG	2 cut(s)	157, 476
Fsp4HI	GCNGC	1 cut(s)	542
GlaI	GCGC	1 cut(s)	141
GluI	GCNGC	1 cut(s)	542
HhaI	GCGC	1 cut(s)	142
Hin1II	CATG	9 cut(s)	196, 224, 292, 365, 454, 495, 499, 512, 600
Hin6I	GCGC	1 cut(s)	140
HinP1I	GCGC	1 cut(s)	140
HinfI	GANTC	1 cut(s)	413
HphI	GGTGA	4 cut(s)	122, 254, 433, 494
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	309, 474
Hpy188III	TCNNGA	4 cut(s)	38, 85, 335, 518
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	425
HpyCH4V	TGCA	5 cut(s)	71, 121, 450, 495, 544
HpyF10VI	GCNNNNNNNGC	4 cut(s)	501, 505, 558, 593
HpyF3I	CTNAG	2 cut(s)	201, 323
Hsp92II	CATG	9 cut(s)	196, 224, 292, 365, 454, 495, 499, 512, 600
HspAI	GCGC	1 cut(s)	140
Kzo9I	GATC	2 cut(s)	237, 277
LguI	GCTCTTC	2 cut(s)	435, 542
Lsp1109I	GCAGC	1 cut(s)	528
LweI	GCATC	3 cut(s)	247, 396, 570
MaeIII	GTNAC	1 cut(s)	284
MalI	GATC	2 cut(s)	239, 279
MboI	GATC	2 cut(s)	237, 277
MboII	GAAGA	4 cut(s)	57, 413, 452, 559
MhlI	GDGCHC	2 cut(s)	123, 381
MluCI	AATT	5 cut(s)	50, 350, 426, 468, 535
MlyI	GAGTC	1 cut(s)	422
MnlI	CCTC	3 cut(s)	305, 342, 411
Mph1103I	ATGCAT	2 cut(s)	452, 497
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	494
MspR9I	CCNGG	2 cut(s)	175, 282
MvaI	CCWGG	2 cut(s)	175, 282
MvnI	CGCG	1 cut(s)	142
MwoI	GCNNNNNNNGC	4 cut(s)	501, 505, 558, 593
NdeII	GATC	2 cut(s)	237, 277
NlaIII	CATG	9 cut(s)	196, 224, 292, 365, 454, 495, 499, 512, 600
NlaIV	GGNNCC	2 cut(s)	146, 213
NsiI	ATGCAT	2 cut(s)	452, 497
NspI	RCATGY	4 cut(s)	292, 495, 499, 512
PaeI	GCATGC	1 cut(s)	499
PciI	ACATGT	1 cut(s)	288
PciSI	GCTCTTC	2 cut(s)	435, 542
PkrI	GCNGC	1 cut(s)	543
PleI	GAGTC	1 cut(s)	421
PpsI	GAGTC	1 cut(s)	421
PscI	ACATGT	1 cut(s)	288
PshBI	ATTAAT	1 cut(s)	233
Psp6I	CCWGG	2 cut(s)	173, 280
PspGI	CCWGG	2 cut(s)	173, 280
PspN4I	GGNNCC	2 cut(s)	146, 213
PstI	CTGCAG	2 cut(s)	73, 546
RsaI	GTAC	2 cut(s)	293, 330
RsaNI	GTAC	2 cut(s)	292, 329
RseI	CAYNNNNRTG	1 cut(s)	494
SapI	GCTCTTC	2 cut(s)	435, 542
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	1 cut(s)	542
Sau3AI	GATC	2 cut(s)	237, 277
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	2 cut(s)	175, 282
SduI	GDGCHC	2 cut(s)	123, 381
SetI	ASST	7 cut(s)	96, 153, 207, 297, 334, 374, 436
SfaNI	GCATC	3 cut(s)	247, 396, 570
SfcI	CTRYAG	2 cut(s)	69, 542
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	2 cut(s)	333, 410
SmoI	CTYRAG	2 cut(s)	333, 410
SphI	GCATGC	1 cut(s)	499
Sse9I	AATT	5 cut(s)	50, 350, 426, 468, 535
SsiI	CCGC	1 cut(s)	142
StyD4I	CCNGG	2 cut(s)	173, 280
TaqI	TCGA	4 cut(s)	45, 251, 416, 571
TasI	AATT	5 cut(s)	50, 350, 426, 468, 535
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TseI	GCWGC	1 cut(s)	541
TspDTI	ATGAA	2 cut(s)	141, 480
TspGWI	ACGGA	1 cut(s)	354
VneI	GTGCAC	1 cut(s)	119
VspI	ATTAAT	1 cut(s)	233
XapI	RAATTY	2 cut(s)	350, 468
XceI	RCATGY	4 cut(s)	292, 495, 499, 512
Zsp2I	ATGCAT	2 cut(s)	452, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.