Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Forward (+)

14056181 .. 14058567

Gene Structure 2387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG168200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGGTTATAATGACTCAACCCAACAACTAGATTTTGTAAGTCAAGATTACATCGCATCAAAGCCTCACGCTCAAGATCAAACCATATTCTCTTCAACATACCCTATGTTCATGTTTGATACCACTGCAATCGATCAATTGGCTGCAGAAAATTACAATGCGCGTGTTGAGCTCTTCCAAGATATGGTCTCTGTGGGTTTTAGCAACTCTGACGTGCCGTGGAATCTGAACCAGCATCAAGTCCAGGCTCTTCCTCCTCCTCCTCCTCCTCCAGCCATGGACATAAACTATTTGCCGCCATTGATAGAGAACATGGACAGCATGTTGCCTATCATTGATGATGATCATCATCAAGTACTCCAACCTAACAATTGTAGTAACATGGATATGGAGGAGGGAGATCATCATCACCATCAGGATCAAATGGCAGAGTTGAATGAATGGGTTGTGTCCCAACAACAGTACTCGTCATCATGTCCTAACTTTCTTTTCTGGGACGAGATGAATGGTGTGGTGGATGATCATCAAGAGCCAGGATCAATAAATATCGTTGGAGAAGATCATCATAATATTATTGTACCTGCAACTTCATCAACTACGGGAGCCAATGCAGTACTGCTGTCTTCATTTCCTTCATCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

214

Amino Acids

24.02

Weight (kDa)

4.07

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	9, 643
Acc36I	ACCTGC	1 cut(s)	589
AccB7I	CCANNNNNTGG	1 cut(s)	184
AccII	CGCG	1 cut(s)	163
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	2 cut(s)	426, 544
AfaI	GTAC	4 cut(s)	357, 464, 579, 615
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	2 cut(s)	96, 436
AjiI	CACGTC	1 cut(s)	214
AjnI	CCWGG	2 cut(s)	243, 532
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw21I	GWGCWC	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	2 cut(s)	426, 544
ApeKI	GCWGC	1 cut(s)	143
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	615
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	420
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	2 cut(s)	245, 534
BclI	TGATCA	2 cut(s)	343, 520
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	144
BfuAI	ACCTGC	1 cut(s)	589
BisI	GCNGC	2 cut(s)	144, 296
BlsI	GCNGC	2 cut(s)	145, 297
BmcAI	AGTACT	3 cut(s)	357, 464, 615
Bme1390I	CCNGG	2 cut(s)	245, 534
BmgBI	CACGTC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	604
BmrFI	CCNGG	2 cut(s)	245, 534
BmsI	GCATC	2 cut(s)	65, 244
BpiI	GAAGAC	1 cut(s)	615
BpmI	CTGGAG	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	132
BsaBI	GATNNNNATC	5 cut(s)	342, 345, 348, 405, 522
BsaI	GGTCTC	1 cut(s)	193
BsaJI	CCNNGG	2 cut(s)	218, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse8I	GATNNNNATC	5 cut(s)	342, 345, 348, 405, 522
BseBI	CCWGG	2 cut(s)	245, 534
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	218, 276
BseGI	GGATG	1 cut(s)	523
BseJI	GATNNNNATC	5 cut(s)	342, 345, 348, 405, 522
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseRI	GAGGAG	6 cut(s)	246, 249, 252, 255, 258, 407
BseXI	GCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	163
BshVI	ATCGAT	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	174
BslFI	GGGAC	2 cut(s)	436, 509
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	193
BsmFI	GGGAC	2 cut(s)	436, 509
Bso31I	GGTCTC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	8 cut(s)	76, 133, 343, 400, 418, 520, 536, 559
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	1 cut(s)	296
BspDI	ATCGAT	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	163
BspLI	GGNNCC	1 cut(s)	604
BspMAI	CTGCAG	1 cut(s)	148
BspMI	ACCTGC	1 cut(s)	589
BspPI	GGATC	2 cut(s)	426, 544
BspQI	GCTCTTC	2 cut(s)	179, 255
BspTNI	GGTCTC	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	218, 276
BssMI	GATC	8 cut(s)	76, 133, 343, 400, 418, 520, 536, 559
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	245, 534
Bst4CI	ACNGT	1 cut(s)	462
Bst6I	CTCTTC	3 cut(s)	97, 179, 255
BstDSI	CCRYGG	2 cut(s)	218, 276
BstF5I	GGATG	1 cut(s)	523
BstFNI	CGCG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	8 cut(s)	79, 136, 346, 403, 421, 523, 539, 562
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	8 cut(s)	76, 133, 343, 400, 418, 520, 536, 559
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	245, 534
BstNSI	RCATGY	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	243, 532
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	615
Bsu15I	ATCGAT	1 cut(s)	132
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	2 cut(s)	218, 276
BtgZI	GCGATG	1 cut(s)	37
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	523
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	1 cut(s)	123
BveI	ACCTGC	1 cut(s)	589
CfoI	GCGC	1 cut(s)	163
ClaI	ATCGAT	1 cut(s)	132
Csp6I	GTAC	4 cut(s)	356, 463, 578, 614
CviAII	CATG	6 cut(s)	112, 277, 313, 322, 382, 474
CviJI	RGCY	7 cut(s)	64, 143, 172, 248, 275, 532, 605
CviKI_1	RGCY	7 cut(s)	64, 143, 172, 248, 275, 532, 605
CviQI	GTAC	4 cut(s)	356, 463, 578, 614
DpnI	GATC	8 cut(s)	78, 135, 345, 402, 420, 522, 538, 561
DpnII	GATC	8 cut(s)	76, 133, 343, 400, 418, 520, 536, 559
Eam1104I	CTCTTC	3 cut(s)	97, 179, 255
EarI	CTCTTC	3 cut(s)	97, 179, 255
Ecl136II	GAGCTC	1 cut(s)	172
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	174
Eco31I	GGTCTC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	172
EcoICRI	GAGCTC	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	243, 532
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	6 cut(s)	115, 280, 316, 325, 385, 477
FaqI	GGGAC	2 cut(s)	436, 509
FatI	CATG	6 cut(s)	111, 276, 312, 321, 381, 473
FbaI	TGATCA	2 cut(s)	343, 520
Fnu4HI	GCNGC	2 cut(s)	144, 296
FokI	GGATG	1 cut(s)	530
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	144, 296
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	144, 296
GsuI	CTGGAG	1 cut(s)	255
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	6 cut(s)	115, 280, 316, 325, 385, 477
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	14, 223
HphI	GGTGA	1 cut(s)	401
Hpy188I	TCNGA	2 cut(s)	211, 228
Hpy188III	TCNNGA	4 cut(s)	44, 74, 416, 527
HpyAV	CCTTC	1 cut(s)	642
HpyCH4III	ACNGT	1 cut(s)	462
HpyCH4IV	ACGT	1 cut(s)	213
HpyCH4V	TGCA	4 cut(s)	128, 146, 584, 611
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpySE526I	ACGT	1 cut(s)	213
Hsp92II	CATG	6 cut(s)	115, 280, 316, 325, 385, 477
HspAI	GCGC	1 cut(s)	161
Ksp22I	TGATCA	2 cut(s)	343, 520
Kzo9I	GATC	8 cut(s)	76, 133, 343, 400, 418, 520, 536, 559
LguI	GCTCTTC	2 cut(s)	179, 255
LmnI	GCTCC	1 cut(s)	602
LpnPI	CCDG	9 cut(s)	230, 245, 257, 285, 401, 478, 519, 546, 594
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	2 cut(s)	65, 244
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	213
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	8 cut(s)	78, 135, 345, 402, 420, 522, 538, 561
MboI	GATC	8 cut(s)	76, 133, 343, 400, 418, 520, 536, 559
MboII	GAAGA	5 cut(s)	84, 166, 242, 569, 615
MfeI	CAATTG	2 cut(s)	137, 370
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	3 cut(s)	137, 151, 370
MlyI	GAGTC	1 cut(s)	8
MmeI	TCCRAC	2 cut(s)	385, 532
MnlI	CCTC	9 cut(s)	75, 264, 267, 270, 273, 276, 279, 385, 388
MslI	CAYNNNNRTG	1 cut(s)	386
MspR9I	CCNGG	2 cut(s)	245, 534
MunI	CAATTG	2 cut(s)	137, 370
MvaI	CCWGG	2 cut(s)	245, 534
MvnI	CGCG	1 cut(s)	163
MwoI	GCNNNNNNNGC	1 cut(s)	169
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	8 cut(s)	76, 133, 343, 400, 418, 520, 536, 559
NlaIII	CATG	6 cut(s)	115, 280, 316, 325, 385, 477
NlaIV	GGNNCC	1 cut(s)	604
NspI	RCATGY	1 cut(s)	325
PciSI	GCTCTTC	2 cut(s)	179, 255
PfeI	GAWTC	1 cut(s)	223
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	145, 297
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
PsiI	TTATAA	2 cut(s)	9, 643
Psp124BI	GAGCTC	1 cut(s)	174
Psp6I	CCWGG	2 cut(s)	243, 532
PspGI	CCWGG	2 cut(s)	243, 532
PspN4I	GGNNCC	1 cut(s)	604
PstI	CTGCAG	1 cut(s)	148
RsaI	GTAC	4 cut(s)	357, 464, 579, 615
RsaNI	GTAC	4 cut(s)	356, 463, 578, 614
RseI	CAYNNNNRTG	1 cut(s)	386
SacI	GAGCTC	1 cut(s)	174
SapI	GCTCTTC	2 cut(s)	179, 255
SatI	GCNGC	2 cut(s)	144, 296
Sau3AI	GATC	8 cut(s)	76, 133, 343, 400, 418, 520, 536, 559
ScaI	AGTACT	3 cut(s)	357, 464, 615
SchI	GAGTC	1 cut(s)	8
ScrFI	CCNGG	2 cut(s)	245, 534
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	4 cut(s)	174, 216, 367, 583
SfaNI	GCATC	2 cut(s)	65, 244
SfcI	CTRYAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	3 cut(s)	137, 151, 370
SsiI	CCGC	1 cut(s)	296
SspI	AATATT	1 cut(s)	571
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	174
StyD4I	CCNGG	2 cut(s)	243, 532
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	462
TaiI	ACGT	1 cut(s)	216
TaqI	TCGA	1 cut(s)	132
TasI	AATT	3 cut(s)	137, 151, 370
TatI	WGTACW	3 cut(s)	355, 462, 613
TauI	GCSGC	1 cut(s)	298
TfiI	GAWTC	1 cut(s)	223
TscAI	CASTG	1 cut(s)	130
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	6 cut(s)	100, 453, 518, 579, 615, 624
TspRI	CASTG	1 cut(s)	130
Van91I	CCANNNNNTGG	1 cut(s)	184
XceI	RCATGY	1 cut(s)	325
XspI	CTAG	1 cut(s)	29
ZrmI	AGTACT	3 cut(s)	357, 464, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.