Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00008

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

17329 .. 19389

Gene Structure 2061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTGAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAGCTCATCAGATACATCACCACCCATGGCTATGGTTGTTGGAGCGAAGTCCCTGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGCTGCAGGTTGAGGTGGATTAATTATTTGAGGCCTGATATTAGAAGAGGGAGATTTACTCCAGAAGAAGAGAAATTGATTATTAGCCTTCATGGGGTTGTAGGCAACAGATGGGCTCATATAGCAAGTCACCTGCCTGGAAGAACAGACAACGAGATCAAGAACTACTGGAATTCATGGATCAAAAAGAAGATTCGAAAACCTTCCCCACCATCATCGACTTCGACAACAACCAGCACCACTGCACCTATTGCTCAAATGGGTTATAATGACTCAACCCAACAACTAGATTTTGTAAGTCAAGATTACATCGCATCAAAGCCTCACGCTCAAGATCAAACCATATTCTCTTCAACATACCCCATGTTCATGTTTGATACCACTGCAATCGATCAATTGGCTGCCGAAAATTACAATGCGCGTGTTGAGCTCTTCCAAGATATGGTCTCTGTGGGTTTTAGCAACCCTGACGTGCCGTGGAATCTGAACCAGCATCAAGTCCAGGCTCTTCCTCCTCCTCCTCCTCCTCCAGCCATGGACATAAACTATTTGCCGCCATTGATAGAGAACATGGACAGCATGTTGCCTATCATTGATGATCATCATCATCAAGTACTCCAACCTAACAATTGTAGTAACATGGATATGGAGGAGGGAGATCATCATCACCATCAGGATCAAATGGCAGAGTTGAATGAATGGGTTGTGTCCCAACAACAATACTCGTCATCATGTCCTAACTTTCTTTTCTGGACGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

304

Amino Acids

35.03

Weight (kDa)

5.99

Isoelectric Point (pI)

52.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	6.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	1e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 118	7.3e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AarI	CACCTGC	1 cut(s)	294
Acc36I	ACCTGC	2 cut(s)	150, 294
AccB7I	CCANNNNNTGG	1 cut(s)	595
AccII	CGCG	1 cut(s)	574
AciI	CCGC	1 cut(s)	707
AclWI	GGATC	2 cut(s)	341, 837
AcsI	RAATTY	1 cut(s)	325
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	3 cut(s)	31, 247, 595
AgsI	TTSAA	3 cut(s)	140, 507, 847
AjiI	CACGTC	1 cut(s)	625
AjnI	CCWGG	2 cut(s)	289, 654
AluBI	AGCT	4 cut(s)	73, 131, 156, 583
AluI	AGCT	4 cut(s)	73, 131, 156, 583
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	2 cut(s)	57, 604
AlwI	GGATC	2 cut(s)	341, 837
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	3 cut(s)	18, 156, 554
ApoI	RAATTY	1 cut(s)	325
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	574
AsuHPI	GGTGA	4 cut(s)	46, 79, 275, 812
AsuII	TTCGAA	1 cut(s)	349
AxyI	CCTNAGG	1 cut(s)	57
BanII	GRGCYC	2 cut(s)	271, 585
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	3 cut(s)	5, 143, 541
BccI	CCATC	3 cut(s)	258, 373, 831
BceAI	ACGGC	1 cut(s)	613
BciT130I	CCWGG	2 cut(s)	291, 656
BclI	TGATCA	1 cut(s)	751
BcoDI	GTCTC	2 cut(s)	57, 604
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	157
BfuAI	ACCTGC	2 cut(s)	150, 294
BisI	GCNGC	4 cut(s)	19, 157, 555, 707
BlsI	GCNGC	4 cut(s)	20, 158, 556, 708
BmcAI	AGTACT	1 cut(s)	768
Bme1390I	CCNGG	2 cut(s)	291, 656
BmgBI	CACGTC	1 cut(s)	625
BmrFI	CCNGG	2 cut(s)	291, 656
BmsI	GCATC	2 cut(s)	476, 655
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	2 cut(s)	198, 666
Bpu14I	TTCGAA	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	468
Bsa29I	ATCGAT	1 cut(s)	543
BsaBI	GATNNNNATC	3 cut(s)	753, 756, 816
BsaI	GGTCTC	2 cut(s)	57, 604
BsaJI	CCNNGG	3 cut(s)	94, 629, 687
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 247, 595
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	3 cut(s)	753, 756, 816
BseBI	CCWGG	2 cut(s)	291, 656
BseCI	ATCGAT	1 cut(s)	543
BseDI	CCNNGG	3 cut(s)	94, 629, 687
BseJI	GATNNNNATC	3 cut(s)	753, 756, 816
BseLI	CCNNNNNNNGG	3 cut(s)	31, 247, 595
BseMII	CTCAG	2 cut(s)	48, 114
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	6 cut(s)	657, 660, 663, 666, 669, 818
BseXI	GCAGC	3 cut(s)	5, 143, 541
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	574
BshFI	GGCC	1 cut(s)	187
BshVI	ATCGAT	1 cut(s)	543
BsiHKAI	GWGCWC	1 cut(s)	585
BslFI	GGGAC	2 cut(s)	104, 847
BslI	CCNNNNNNNGG	3 cut(s)	31, 247, 595
BsmAI	GTCTC	2 cut(s)	57, 604
BsmFI	GGGAC	2 cut(s)	104, 847
BsnI	GGCC	1 cut(s)	187
Bso31I	GGTCTC	2 cut(s)	57, 604
Bsp119I	TTCGAA	1 cut(s)	349
Bsp1286I	GDGCHC	2 cut(s)	271, 585
Bsp143I	GATC	7 cut(s)	309, 333, 487, 544, 751, 811, 829
Bsp19I	CCATGG	2 cut(s)	94, 687
BspACI	CCGC	1 cut(s)	707
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	49, 115
BspDI	ATCGAT	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	574
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	2 cut(s)	150, 294
BspPI	GGATC	2 cut(s)	341, 837
BspQI	GCTCTTC	2 cut(s)	590, 666
BspT104I	TTCGAA	1 cut(s)	349
BspTNI	GGTCTC	2 cut(s)	57, 604
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	3 cut(s)	94, 629, 687
BssMI	GATC	7 cut(s)	309, 333, 487, 544, 751, 811, 829
BssT1I	CCWWGG	2 cut(s)	94, 687
Bst2UI	CCWGG	2 cut(s)	291, 656
Bst6I	CTCTTC	6 cut(s)	32, 193, 216, 508, 590, 666
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstBI	TTCGAA	1 cut(s)	349
BstDEI	CTNAG	2 cut(s)	57, 123
BstDSI	CCRYGG	3 cut(s)	94, 629, 687
BstEII	GGTNACC	1 cut(s)	5
BstFNI	CGCG	1 cut(s)	574
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	7 cut(s)	312, 336, 490, 547, 754, 814, 832
BstMAI	GTCTC	2 cut(s)	57, 604
BstMBI	GATC	7 cut(s)	309, 333, 487, 544, 751, 811, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 404, 580
BstNI	CCWGG	2 cut(s)	291, 656
BstNSI	RCATGY	1 cut(s)	736
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	2 cut(s)	289, 654
BstSFI	CTRYAG	1 cut(s)	157
BstUI	CGCG	1 cut(s)	574
BstV1I	GCAGC	3 cut(s)	5, 143, 541
BstXI	CCANNNNNNTGG	1 cut(s)	101
Bsu15I	ATCGAT	1 cut(s)	543
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	187
BsuTUI	ATCGAT	1 cut(s)	543
BtgI	CCRYGG	3 cut(s)	94, 629, 687
BtgZI	GCGATG	1 cut(s)	448
BtrI	CACGTC	1 cut(s)	625
BtsI	GCAGTG	2 cut(s)	393, 534
BtsIMutI	CAGTG	2 cut(s)	393, 534
BveI	ACCTGC	2 cut(s)	150, 294
CfoI	GCGC	1 cut(s)	574
ClaI	ATCGAT	1 cut(s)	543
Csp6I	GTAC	1 cut(s)	767
CviQI	GTAC	1 cut(s)	767
DdeI	CTNAG	2 cut(s)	57, 123
DpnI	GATC	7 cut(s)	311, 335, 489, 546, 753, 813, 831
DpnII	GATC	7 cut(s)	309, 333, 487, 544, 751, 811, 829
Eam1104I	CTCTTC	6 cut(s)	32, 193, 216, 508, 590, 666
EarI	CTCTTC	6 cut(s)	32, 193, 216, 508, 590, 666
Ecl136II	GAGCTC	1 cut(s)	583
Eco130I	CCWWGG	2 cut(s)	94, 687
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	2 cut(s)	271, 585
Eco31I	GGTCTC	2 cut(s)	57, 604
Eco53kI	GAGCTC	1 cut(s)	583
Eco81I	CCTNAGG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	5
EcoICRI	GAGCTC	1 cut(s)	583
EcoO65I	GGTNACC	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	289, 654
EcoT14I	CCWWGG	2 cut(s)	94, 687
EcoT38I	GRGCYC	2 cut(s)	271, 585
ErhI	CCWWGG	2 cut(s)	94, 687
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	2 cut(s)	104, 847
FbaI	TGATCA	1 cut(s)	751
Fnu4HI	GCNGC	4 cut(s)	19, 157, 555, 707
FriOI	GRGCYC	2 cut(s)	271, 585
Fsp4HI	GCNGC	4 cut(s)	19, 157, 555, 707
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	4 cut(s)	19, 157, 555, 707
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	2 cut(s)	198, 666
HaeIII	GGCC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	574
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HinfI	GANTC	3 cut(s)	346, 425, 634
HphI	GGTGA	4 cut(s)	46, 79, 275, 812
Hpy188I	TCNGA	2 cut(s)	80, 639
Hpy188III	TCNNGA	7 cut(s)	56, 215, 313, 455, 485, 827, 904
HpyAV	CCTTC	3 cut(s)	25, 251, 366
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	4 cut(s)	21, 159, 398, 539
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 404, 580
HpyF3I	CTNAG	2 cut(s)	57, 123
HpySE526I	ACGT	1 cut(s)	624
HspAI	GCGC	1 cut(s)	572
Ksp22I	TGATCA	1 cut(s)	751
Kzo9I	GATC	7 cut(s)	309, 333, 487, 544, 751, 811, 829
LguI	GCTCTTC	2 cut(s)	590, 666
LmnI	GCTCC	1 cut(s)	111
Lsp1109I	GCAGC	3 cut(s)	5, 143, 541
LweI	GCATC	2 cut(s)	476, 655
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	3 cut(s)	5, 281, 788
MalI	GATC	7 cut(s)	311, 335, 489, 546, 753, 813, 831
MboI	GATC	7 cut(s)	309, 333, 487, 544, 751, 811, 829
MfeI	CAATTG	2 cut(s)	548, 781
MhlI	GDGCHC	2 cut(s)	271, 585
MluCI	AATT	6 cut(s)	175, 227, 325, 548, 562, 781
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	2 cut(s)	89, 796
MroXI	GAANNNNTTC	1 cut(s)	355
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	3 cut(s)	99, 521, 797
MspR9I	CCNGG	2 cut(s)	291, 656
MunI	CAATTG	2 cut(s)	548, 781
MvaI	CCWGG	2 cut(s)	291, 656
MvnI	CGCG	1 cut(s)	574
MwoI	GCNNNNNNNGC	3 cut(s)	275, 404, 580
NcoI	CCATGG	2 cut(s)	94, 687
NdeII	GATC	7 cut(s)	309, 333, 487, 544, 751, 811, 829
NmuCI	GTSAC	2 cut(s)	5, 281
NspI	RCATGY	1 cut(s)	736
NspV	TTCGAA	1 cut(s)	349
PaqCI	CACCTGC	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	187
PciSI	GCTCTTC	2 cut(s)	590, 666
PdmI	GAANNNNTTC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	346, 634
PflMI	CCANNNNNTGG	1 cut(s)	595
PkrI	GCNGC	4 cut(s)	20, 158, 556, 708
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	174
PsiI	TTATAA	1 cut(s)	420
Psp124BI	GAGCTC	1 cut(s)	585
Psp6I	CCWGG	2 cut(s)	289, 654
PspEI	GGTNACC	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	289, 654
PstI	CTGCAG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
RseI	CAYNNNNRTG	3 cut(s)	99, 521, 797
SacI	GAGCTC	1 cut(s)	585
SapI	GCTCTTC	2 cut(s)	590, 666
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	4 cut(s)	19, 157, 555, 707
Sau3AI	GATC	7 cut(s)	309, 333, 487, 544, 751, 811, 829
ScaI	AGTACT	1 cut(s)	768
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	2 cut(s)	291, 656
SduI	GDGCHC	2 cut(s)	271, 585
SfaNI	GCATC	2 cut(s)	476, 655
SfcI	CTRYAG	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	349
SmiMI	CAYNNNNRTG	3 cut(s)	99, 521, 797
SmlI	CTYRAG	1 cut(s)	483
SmoI	CTYRAG	1 cut(s)	483
Sse9I	AATT	6 cut(s)	175, 227, 325, 548, 562, 781
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	707
SspMI	CTAG	1 cut(s)	440
SstI	GAGCTC	1 cut(s)	585
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	289, 654
StyI	CCWWGG	2 cut(s)	94, 687
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	4 cut(s)	349, 371, 377, 543
TasI	AATT	6 cut(s)	175, 227, 325, 548, 562, 781
TatI	WGTACW	1 cut(s)	766
TauI	GCSGC	1 cut(s)	709
TfiI	GAWTC	2 cut(s)	346, 634
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	2 cut(s)	400, 541
TseFI	GTSAC	2 cut(s)	5, 281
TseI	GCWGC	3 cut(s)	18, 156, 554
Tsp45I	GTSAC	2 cut(s)	5, 281
TspDTI	ATGAA	4 cut(s)	233, 318, 511, 864
TspRI	CASTG	2 cut(s)	400, 541
Van91I	CCANNNNNTGG	1 cut(s)	595
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	1 cut(s)	736
XmnI	GAANNNNTTC	1 cut(s)	355
XspI	CTAG	1 cut(s)	440
ZrmI	AGTACT	1 cut(s)	768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.