Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

55113746 .. 55114882

Gene Structure 1137 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003996

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGGTCACCACTATTGCTGCAAGGAACGAAAGATTAAGAGGGGCCTTTGGTCCCCTGAGGAAGATGAAAAGCTGTCGAGATACATCACTACCTATGGCCATGGCTGTTGGAGAAAAGTCCCTGAGCAAGCTGGGCTACAAAGGTGTGGTAAGAGCTGTAGACTGAGATGGCTCAATTACTTGAGACCTGATATCAAAAGAGGAGTGTTTACACCAGATGAGGAGAAATTGATTATTAGACTGCATGGGGTTGTAGGGAACAGATGGGCGCATATCGCAAAGTGTCTTCCAGGAAGAACTGACAATGAAATAAAGAACTACTGGAATTCATGGATAAAGAAGAAGCTAGAGAAGCCTTCTTCACCAATGACCACATCTGCTGATCATCATCATCAATATTCCCAAATGGCATGTCTTAATCCAAACAACCAAGATCATATTGTGAATCAAACTTTCATTGCAAGGCCGTCTGCATACCCCCTATATATGTTTGAGGCTGCTTCACTTGATGAGGGTACTACTCGTGCAAACAACATTAACATCAATGTACAAGTAGATCAGCATTTGGCACTCAACGTGAACTCGAACAATCTTGGGGCATGGATTTTGGATCAGCATAATGTTCCACTCCTTCCTTCTACAGCACCATTTACAAACATGGATGCAAATCTGTTAATGCCATCCCTCATAGGAAGTACTACTACTGTTAATGCAAGCATGGTTGAAGTGGAATCTTGTAGTAATATTGATGAAGAAGGTGATATTTCATTGGAGTGCTTGCAGAGTCATCAGGATTTGAATGCAGTGGTTCATTCCCGGCAACAGCAACCGTGTTCGAACTTAATTCCATTTTTGCTGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

288

Amino Acids

32.6

Weight (kDa)

7.19

Isoelectric Point (pI)

60.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	8.4e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 118	3.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AclWI	GGATC	1 cut(s)	618
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	325
AfaI	GTAC	3 cut(s)	517, 549, 697
AgsI	TTSAA	2 cut(s)	725, 799
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	4 cut(s)	73, 131, 156, 346
AluI	AGCT	4 cut(s)	73, 131, 156, 346
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	618
AoxI	GGCC	3 cut(s)	43, 97, 464
ApeKI	GCWGC	2 cut(s)	18, 497
ApoI	RAATTY	1 cut(s)	325
ArsI	GACNNNNNNTTYG	2 cut(s)	397, 429
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	2 cut(s)	43, 51
AsuC2I	CCSGG	1 cut(s)	817
AsuHPI	GGTGA	2 cut(s)	354, 770
AsuII	TTCGAA	1 cut(s)	836
AvaII	GGWCC	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	685, 717
BauI	CACGAG	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	5, 484
BccI	CCATC	3 cut(s)	162, 258, 688
BceAI	ACGGC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	817
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	2 cut(s)	157, 639
BisI	GCNGC	2 cut(s)	19, 498
BlsI	GCNGC	2 cut(s)	20, 499
BmcAI	AGTACT	1 cut(s)	697
Bme1390I	CCNGG	2 cut(s)	291, 817
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	2 cut(s)	43, 51
BmiI	GGNNCC	2 cut(s)	44, 53
BmrFI	CCNGG	2 cut(s)	291, 817
BmsI	GCATC	1 cut(s)	652
BpiI	GAAGAC	1 cut(s)	278
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	836
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	817
BsaBI	GATNNNNATC	2 cut(s)	387, 666
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	2 cut(s)	387, 666
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	2 cut(s)	667, 680
BseJI	GATNNNNATC	2 cut(s)	387, 666
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	3 cut(s)	48, 114, 155
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	216, 236
BseXI	GCAGC	2 cut(s)	5, 484
BseYI	CCCAGC	2 cut(s)	131, 856
BshFI	GGCC	3 cut(s)	45, 99, 466
BsiSI	CCGG	1 cut(s)	817
BslFI	GGGAC	2 cut(s)	37, 104
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	2 cut(s)	37, 104
BsmI	GAATGC	1 cut(s)	805
BsnI	GGCC	3 cut(s)	45, 99, 466
Bso31I	GGTCTC	1 cut(s)	178
Bsp119I	TTCGAA	1 cut(s)	836
Bsp1407I	TGTACA	1 cut(s)	547
Bsp143I	GATC	4 cut(s)	382, 433, 556, 610
Bsp19I	CCATGG	1 cut(s)	100
BspANI	GGCC	3 cut(s)	45, 99, 466
BspCNI	CTCAG	3 cut(s)	49, 115, 156
BspLI	GGNNCC	2 cut(s)	44, 53
BspPI	GGATC	1 cut(s)	618
BspT104I	TTCGAA	1 cut(s)	836
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	547
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	4 cut(s)	382, 433, 556, 610
BssSI	CACGAG	1 cut(s)	522
BssT1I	CCWWGG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	706, 831
BstAUI	TGTACA	1 cut(s)	547
BstBI	TTCGAA	1 cut(s)	836
BstC8I	GCNNGC	3 cut(s)	129, 715, 779
BstDEI	CTNAG	3 cut(s)	57, 123, 164
BstDSI	CCRYGG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	2 cut(s)	667, 680
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	4 cut(s)	385, 436, 559, 613
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	4 cut(s)	382, 433, 556, 610
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 275, 352
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	414
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	2 cut(s)	289, 815
BstSFI	CTRYAG	2 cut(s)	157, 639
BstV1I	GCAGC	2 cut(s)	5, 484
BstV2I	GAAGAC	1 cut(s)	278
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	45, 99, 466
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	667, 680
BtsI	GCAGTG	1 cut(s)	810
BtsIMutI	CAGTG	1 cut(s)	810
Cac8I	GCNNGC	3 cut(s)	129, 715, 779
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	43, 51
Csp6I	GTAC	3 cut(s)	516, 548, 696
CviAII	CATG	7 cut(s)	101, 245, 330, 411, 600, 658, 718
CviQI	GTAC	3 cut(s)	516, 548, 696
DdeI	CTNAG	3 cut(s)	57, 123, 164
DpnI	GATC	4 cut(s)	384, 435, 558, 612
DpnII	GATC	4 cut(s)	382, 433, 556, 610
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	51
Eco81I	CCTNAGG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	7 cut(s)	104, 248, 333, 414, 603, 661, 721
FaqI	GGGAC	2 cut(s)	37, 104
FatI	CATG	7 cut(s)	100, 244, 329, 410, 599, 657, 717
FbaI	TGATCA	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	19, 498
FokI	GGATG	2 cut(s)	667, 674
Fsp4HI	GCNGC	2 cut(s)	19, 498
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	2 cut(s)	19, 498
GsaI	CCCAGC	2 cut(s)	135, 860
HaeIII	GGCC	3 cut(s)	45, 99, 466
HapII	CCGG	1 cut(s)	817
HhaI	GCGC	1 cut(s)	271
Hin1II	CATG	7 cut(s)	104, 248, 333, 414, 603, 661, 721
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	3 cut(s)	445, 731, 784
HpaII	CCGG	1 cut(s)	817
HphI	GGTGA	2 cut(s)	354, 770
Hpy166II	GTNNAC	3 cut(s)	161, 210, 580
Hpy188III	TCNNGA	2 cut(s)	78, 791
Hpy8I	GTNNAC	3 cut(s)	161, 210, 580
HpyAV	CCTTC	4 cut(s)	366, 641, 645, 749
HpyCH4III	ACNGT	2 cut(s)	706, 831
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	9 cut(s)	21, 244, 461, 473, 527, 665, 713, 781, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 275, 352
HpyF3I	CTNAG	3 cut(s)	57, 123, 164
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	7 cut(s)	104, 248, 333, 414, 603, 661, 721
HspAI	GCGC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	382, 433, 556, 610
Lsp1109I	GCAGC	2 cut(s)	5, 484
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	4 cut(s)	384, 435, 558, 612
MboI	GATC	4 cut(s)	382, 433, 556, 610
MboII	GAAGA	6 cut(s)	74, 278, 306, 351, 352, 764
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	4 cut(s)	175, 227, 325, 843
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	793
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	7 cut(s)	33, 52, 194, 214, 487, 505, 695
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	6 cut(s)	36, 417, 537, 674, 708, 842
MslI	CAYNNNNRTG	1 cut(s)	772
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	1 cut(s)	817
MspR9I	CCNGG	2 cut(s)	291, 817
Mva1269I	GAATGC	1 cut(s)	805
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	133, 275, 352
NciI	CCSGG	1 cut(s)	817
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	4 cut(s)	382, 433, 556, 610
NlaIII	CATG	7 cut(s)	104, 248, 333, 414, 603, 661, 721
NlaIV	GGNNCC	2 cut(s)	44, 53
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	1 cut(s)	414
NspV	TTCGAA	1 cut(s)	836
PctI	GAATGC	1 cut(s)	805
PfeI	GAWTC	2 cut(s)	445, 731
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	20, 499
PleI	GAGTC	1 cut(s)	792
PpsI	GAGTC	1 cut(s)	792
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	5
PspFI	CCCAGC	2 cut(s)	131, 856
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	44, 53
PspPI	GGNCC	2 cut(s)	43, 51
RsaI	GTAC	3 cut(s)	517, 549, 697
RsaNI	GTAC	3 cut(s)	516, 548, 696
RseI	CAYNNNNRTG	1 cut(s)	772
SaqAI	TTAA	6 cut(s)	36, 417, 537, 674, 708, 842
SatI	GCNGC	2 cut(s)	19, 498
Sau3AI	GATC	4 cut(s)	382, 433, 556, 610
Sau96I	GGNCC	2 cut(s)	43, 51
ScaI	AGTACT	1 cut(s)	697
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	2 cut(s)	291, 817
SetI	ASST	9 cut(s)	75, 95, 133, 146, 158, 190, 348, 579, 760
SfaNI	GCATC	1 cut(s)	652
SfcI	CTRYAG	2 cut(s)	157, 639
SfuI	TTCGAA	1 cut(s)	836
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	772
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	4 cut(s)	175, 227, 325, 843
SspI	AATATT	2 cut(s)	398, 745
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	289, 815
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	706, 831
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	3 cut(s)	77, 584, 836
TasI	AATT	4 cut(s)	175, 227, 325, 843
TatI	WGTACW	2 cut(s)	547, 695
TfiI	GAWTC	2 cut(s)	445, 731
Tru1I	TTAA	6 cut(s)	36, 417, 537, 674, 708, 842
Tru9I	TTAA	6 cut(s)	36, 417, 537, 674, 708, 842
TscAI	CASTG	1 cut(s)	810
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	18, 497
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	7 cut(s)	81, 318, 321, 445, 756, 765, 800
TspRI	CASTG	1 cut(s)	810
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.