Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

21817690 .. 21819324

Gene Structure 1635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1089700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCATCAAATCCAAATTAACCACCCATTGATTGATATAGTCTTTCGGCCCTCCAAATTTAAAGCCATTGCCACGTTCGAAAATGCTCAATGGGTTTTGGGAAGCTTATATTTTTCTCTTACACAATGTGATGAAATTTTGGCGAGTCTGTTTTATCTTAGAACCTGTAAATTTGAAGCTGTTTTGTTGTGGTTATGGGCTCATATAGCAAGCCATCTGCCGGGAAGAACAGACAACGAGATTAAGAACTACTGGAATTCATGGATAAAAAAGAAGATACGAAAGCCTTCCACACCTTCAAGTGCTACCACAATAAGTCCACCACCTAGTGTTGATCATCAACATATAATTCCCCAACTGGGTAATTACAATAATCAACTAGATTTTGCACACCAAGATTTGAGTACGATCATAAAGCCTCAAGCTCAAGAAACCCTCTTTTCTTCAACATGCCCTATGTTCATGTTTGATACAAGTACTACTGCCAATATTGAAGCAGCTCCAGACAGTTACAATGCTCGTGGGGAGATTTTCCAAGACATGATTGTCGCGACTGGTTTGAACTCATCTGAGCCGTGGAATTTGAATCAGCATCAAGTCCAGGCTTTCCCACCTCCGGTGACAATGTCATTTAATACTACAAGTAGCAGTACTAATAATATTACCATGAATACAAACTATTTGCCACCGTTGATCGAGAACATGGACAACATGGCACCGAACGTTGATCATCACCACCATCACCATCATCATCAATCTTGTAACAATATTGATGAGGAGGGAAACCATGATCAGATAGCCTTGGAGTGCTTAATGCAAAGGCAGGAGTTGAATGAATGGGTTGTTACCCAACAACAATGTTCTAGCTTTCTATTTTGGGACAGTGTTGTTGATGATCAAGCGACAGTACTTGTTGGACAAGATCATGGTATTGCACATCCAACTTCATCAAACGCAGTACAACTCTCTTCTTTTCCTCCATCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

330

Amino Acids

37.29

Weight (kDa)

5.5

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	66 - 88	1.9e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	545
AccB1I	GGYRCC	1 cut(s)	715
AccII	CGCG	1 cut(s)	551
AclI	AACGTT	1 cut(s)	723
AcsI	RAATTY	5 cut(s)	56, 135, 170, 256, 580
AdeI	CACNNNGTG	2 cut(s)	128, 329
AfaI	GTAC	5 cut(s)	406, 478, 652, 909, 960
AfiI	CCNNNNNNNGG	3 cut(s)	220, 359, 616
AgsI	TTSAA	7 cut(s)	176, 300, 447, 494, 562, 586, 832
AjnI	CCWGG	1 cut(s)	600
AluBI	AGCT	5 cut(s)	105, 179, 425, 500, 867
AluI	AGCT	5 cut(s)	105, 179, 425, 500, 867
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	5 cut(s)	56, 135, 170, 256, 580
Asp700I	GAANNNNTTC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	1 cut(s)	222
AsuHPI	GGTGA	3 cut(s)	631, 725, 734
AsuII	TTCGAA	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	202
BauI	CACGAG	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	509
BccI	CCATC	4 cut(s)	222, 747, 753, 988
BceAI	ACGGC	1 cut(s)	559
BciT130I	CCWGG	1 cut(s)	602
BclI	TGATCA	4 cut(s)	334, 727, 790, 895
BcnI	CCSGG	1 cut(s)	222
BfaI	CTAG	3 cut(s)	327, 380, 864
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
BmcAI	AGTACT	3 cut(s)	478, 652, 909
Bme1390I	CCNGG	2 cut(s)	222, 602
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	1 cut(s)	717
BmrFI	CCNGG	2 cut(s)	222, 602
BmrI	ACTGGG	1 cut(s)	368
BmsI	GCATC	2 cut(s)	13, 601
BmuI	ACTGGG	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	486
Bpu14I	TTCGAA	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	405, 411
BpuMI	CCSGG	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	575, 801
BsaWI	WCCGGW	1 cut(s)	616
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 359, 616
Bse1I	ACTGG	3 cut(s)	257, 363, 559
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	602
BseDI	CCNNGG	2 cut(s)	575, 801
BseGI	GGATG	1 cut(s)	937
BseLI	CCNNNNNNNGG	3 cut(s)	220, 359, 616
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	561
BseNI	ACTGG	3 cut(s)	257, 363, 559
BseRI	GAGGAG	1 cut(s)	791
BseXI	GCAGC	1 cut(s)	509
Bsh1236I	CGCG	1 cut(s)	551
BshFI	GGCC	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	715
BsiSI	CCGG	2 cut(s)	221, 617
BslFI	GGGAC	1 cut(s)	893
BslI	CCNNNNNNNGG	3 cut(s)	220, 359, 616
BsmFI	GGGAC	1 cut(s)	893
BsnI	GGCC	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp143I	GATC	7 cut(s)	334, 408, 693, 727, 790, 895, 922
Bsp68I	TCGCGA	1 cut(s)	551
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	562
BspFNI	CGCG	1 cut(s)	551
BspLI	GGNNCC	1 cut(s)	717
BspT104I	TTCGAA	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	715
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	3 cut(s)	257, 363, 559
BssECI	CCNNGG	2 cut(s)	575, 801
BssMI	GATC	7 cut(s)	334, 408, 693, 727, 790, 895, 922
BssSI	CACGAG	1 cut(s)	519
BssT1I	CCWWGG	1 cut(s)	801
Bst2BI	CACGAG	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	602
Bst4CI	ACNGT	4 cut(s)	509, 690, 884, 907
Bst6I	CTCTTC	1 cut(s)	973
BstBI	TTCGAA	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	2 cut(s)	158, 570
BstDSI	CCRYGG	1 cut(s)	575
BstF5I	GGATG	1 cut(s)	937
BstFNI	CGCG	1 cut(s)	551
BstKTI	GATC	7 cut(s)	337, 411, 696, 730, 793, 898, 925
BstMBI	GATC	7 cut(s)	334, 408, 693, 727, 790, 895, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNI	CCWGG	1 cut(s)	602
BstNSI	RCATGY	1 cut(s)	453
BstSCI	CCNGG	2 cut(s)	220, 600
BstUI	CGCG	1 cut(s)	551
BstV1I	GCAGC	1 cut(s)	509
BsuRI	GGCC	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	575
BtsCI	GGATG	1 cut(s)	937
BtsIMutI	CAGTG	1 cut(s)	889
BtuMI	TCGCGA	1 cut(s)	551
Cac8I	GCNNGC	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	5 cut(s)	405, 477, 651, 908, 959
CspCI	CAANNNNNGTGG	2 cut(s)	502, 537
CviAII	CATG	9 cut(s)	261, 450, 463, 541, 667, 703, 712, 788, 926
CviQI	GTAC	5 cut(s)	405, 477, 651, 908, 959
DdeI	CTNAG	2 cut(s)	158, 570
DpnI	GATC	7 cut(s)	336, 410, 695, 729, 792, 897, 924
DpnII	GATC	7 cut(s)	334, 408, 693, 727, 790, 895, 922
DraI	TTTAAA	1 cut(s)	61
DraIII	CACNNNGTG	2 cut(s)	128, 329
DrdI	GACNNNNNNGTC	1 cut(s)	545
DseDI	GACNNNNNNGTC	1 cut(s)	545
Eam1104I	CTCTTC	1 cut(s)	973
EarI	CTCTTC	1 cut(s)	973
Eco130I	CCWWGG	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	256
EcoRII	CCWGG	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	801
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	801
FaeI	CATG	9 cut(s)	264, 453, 466, 544, 670, 706, 715, 791, 929
FaqI	GGGAC	1 cut(s)	893
FatI	CATG	9 cut(s)	260, 449, 462, 540, 666, 702, 711, 787, 925
FbaI	TGATCA	4 cut(s)	334, 727, 790, 895
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	1 cut(s)	924
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	3 cut(s)	327, 380, 864
GluI	GCNGC	1 cut(s)	498
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	49
HapII	CCGG	2 cut(s)	221, 617
Hin1II	CATG	9 cut(s)	264, 453, 466, 544, 670, 706, 715, 791, 929
HindIII	AAGCTT	1 cut(s)	103
HinfI	GANTC	2 cut(s)	145, 586
HpaII	CCGG	2 cut(s)	221, 617
HphI	GGTGA	3 cut(s)	631, 725, 734
Hpy166II	GTNNAC	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	571, 795
Hpy188III	TCNNGA	4 cut(s)	428, 503, 550, 697
Hpy8I	GTNNAC	1 cut(s)	320
HpyAV	CCTTC	2 cut(s)	297, 306
HpyCH4III	ACNGT	4 cut(s)	509, 690, 884, 907
HpyCH4IV	ACGT	2 cut(s)	74, 723
HpyCH4V	TGCA	4 cut(s)	4, 389, 817, 935
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	2 cut(s)	158, 570
HpySE526I	ACGT	2 cut(s)	74, 723
Hsp92II	CATG	9 cut(s)	264, 453, 466, 544, 670, 706, 715, 791, 929
Ksp22I	TGATCA	4 cut(s)	334, 727, 790, 895
Kzo9I	GATC	7 cut(s)	334, 408, 693, 727, 790, 895, 922
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	1 cut(s)	509
LweI	GCATC	2 cut(s)	13, 601
MaeI	CTAG	3 cut(s)	327, 380, 864
MaeII	ACGT	2 cut(s)	74, 723
MaeIII	GTNAC	4 cut(s)	509, 619, 761, 844
MalI	GATC	7 cut(s)	336, 410, 695, 729, 792, 897, 924
MboI	GATC	7 cut(s)	334, 408, 693, 727, 790, 895, 922
MboII	GAAGA	4 cut(s)	237, 286, 435, 960
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	8 cut(s)	15, 56, 135, 170, 256, 348, 364, 580
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	2 cut(s)	895, 965
MnlI	CCTC	7 cut(s)	61, 429, 446, 624, 769, 772, 987
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	286
MseI	TTAA	5 cut(s)	18, 60, 243, 633, 812
MspI	CCGG	2 cut(s)	221, 617
MspR9I	CCNGG	2 cut(s)	222, 602
MvaI	CCWGG	1 cut(s)	602
MvnI	CGCG	1 cut(s)	551
MwoI	GCNNNNNNNGC	1 cut(s)	206
NciI	CCSGG	1 cut(s)	222
NdeII	GATC	7 cut(s)	334, 408, 693, 727, 790, 895, 922
NlaIII	CATG	9 cut(s)	264, 453, 466, 544, 670, 706, 715, 791, 929
NlaIV	GGNNCC	1 cut(s)	717
NmuCI	GTSAC	1 cut(s)	619
NruI	TCGCGA	1 cut(s)	551
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	453
NspV	TTCGAA	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	586
PflFI	GACNNNGTC	1 cut(s)	625
PkrI	GCNGC	1 cut(s)	499
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
Psp1406I	AACGTT	1 cut(s)	723
Psp6I	CCWGG	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	600
PspN4I	GGNNCC	1 cut(s)	717
PspPI	GGNCC	1 cut(s)	48
PsyI	GACNNNGTC	1 cut(s)	625
RruI	TCGCGA	1 cut(s)	551
RsaI	GTAC	5 cut(s)	406, 478, 652, 909, 960
RsaNI	GTAC	5 cut(s)	405, 477, 651, 908, 959
SaqAI	TTAA	5 cut(s)	18, 60, 243, 633, 812
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	7 cut(s)	334, 408, 693, 727, 790, 895, 922
Sau96I	GGNCC	1 cut(s)	48
ScaI	AGTACT	3 cut(s)	478, 652, 909
SchI	GAGTC	1 cut(s)	154
ScrFI	CCNGG	2 cut(s)	222, 602
SduI	GDGCHC	1 cut(s)	202
SfaNI	GCATC	2 cut(s)	13, 601
SfuI	TTCGAA	1 cut(s)	78
SmlI	CTYRAG	2 cut(s)	420, 426
SmoI	CTYRAG	2 cut(s)	420, 426
Sse9I	AATT	8 cut(s)	15, 56, 135, 170, 256, 348, 364, 580
SspI	AATATT	3 cut(s)	490, 661, 769
SspMI	CTAG	3 cut(s)	327, 380, 864
StyD4I	CCNGG	2 cut(s)	220, 600
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	4 cut(s)	509, 690, 884, 907
TaiI	ACGT	2 cut(s)	77, 726
TaqI	TCGA	2 cut(s)	78, 696
TasI	AATT	8 cut(s)	15, 56, 135, 170, 256, 348, 364, 580
TatI	WGTACW	4 cut(s)	476, 650, 907, 958
TfiI	GAWTC	1 cut(s)	586
Tru1I	TTAA	5 cut(s)	18, 60, 243, 633, 812
Tru9I	TTAA	5 cut(s)	18, 60, 243, 633, 812
TscAI	CASTG	1 cut(s)	889
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	6 cut(s)	147, 249, 451, 683, 849, 936
TspRI	CASTG	1 cut(s)	889
Tth111I	GACNNNGTC	1 cut(s)	625
XapI	RAATTY	5 cut(s)	56, 135, 170, 256, 580
XceI	RCATGY	1 cut(s)	453
XmnI	GAANNNNTTC	1 cut(s)	286
XspI	CTAG	3 cut(s)	327, 380, 864
ZrmI	AGTACT	3 cut(s)	478, 652, 909
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.