RLG00000003995
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003850
Physical Location & Seq
Reverse (-)
55102172 .. 55103982
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003995

Sequence Viewer

Length: 1062 bp
ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTGAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAGCTTATCAGATACATCACCACCCACGGCTATGGTTGTTGGAGCGAAGTCCCTGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGCTGCAGGTTGAGGTGGATTAATTATTTGAGGCCTGATATTAGAAGAGGGAGATTTACTCCAGAAGAAGAGAAATTGATTATTAGCCTTCATGGGGTTGTAGGCAACAGATGGGCTCATATAGCAAGTCATCTGCCTGGAAGAACAGACAACGAGATCAAGAACTACTGGAACTCATGGATCAAAAAGAAGATTCGAAAACCTTCCCCACCATCATCGACTTCGACAACAACCAGCACCGCTGCACCTATTGCTCAAATGGGTTATAATGACTCAACCCAACAACTAGATTTTGTAAGTCAAGATTACATAGCATCAAAGAATCACGCTCAAGATCAAACCATATTCTCTTCAACATACCCTATGTTCATGTTTGATACCACTGCAATCGATCAATTGACTGCCGAAAACTACAATGCGCGTGTTGAGCTCTTCCAAGATATGGTCTCTGTGGGTTTCAGCAACTCTGACGTGCCGTGGAATCTGAACCAGCATCAAGTCCAGGCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCAGCCATGGACATAAACTATTTGCCGCCATTGATAGAGAACATGGACAGCATGTTGCCTATCATTGATGATCATCATCATCAAGTACTCCAACCTAACAATTGTAGTAACATGGATATGGAGGAGGGAGATCATCATCACCATCAGGATCAAATGGCAGAGTTGAATGAATGGGTTGTGTCCCAACAACAGTACTCGTCATCATGTCCTAACTTTCTTTTCTGGGACGAGATGAATGGTGTGGTGGATGATCATCAAGGGCCAGGATCAATAAATATCGTTGGAGAAGATCATGATAATATTATTGTACCTGCAACTTCATCAACTACGGGAGCCAATGCAGTACTGCTGTCTTCATTTCCTTCATCTTTATAA

Protein Analysis

354

Amino Acids

39.93

Weight (kDa)

5.42

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 7.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 1.3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 118 9.1e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 420, 1060
Acc36I ACCTGC 2 cut(s) 150, 1006
AccB7I CCANNNNNTGG 1 cut(s) 595
AccII CGCG 1 cut(s) 574
AciI CCGC 2 cut(s) 393, 713
AclWI GGATC 3 cut(s) 341, 843, 961
AfaI GTAC 4 cut(s) 774, 881, 996, 1032
AfiI CCNNNNNNNGG 3 cut(s) 31, 247, 595
AgsI TTSAA 3 cut(s) 140, 507, 853
AjiI CACGTC 1 cut(s) 625
AjnI CCWGG 3 cut(s) 289, 654, 949
AluBI AGCT 4 cut(s) 73, 131, 156, 583
AluI AGCT 4 cut(s) 73, 131, 156, 583
Alw21I GWGCWC 1 cut(s) 585
Alw26I GTCTC 2 cut(s) 57, 604
AlwI GGATC 3 cut(s) 341, 843, 961
AoxI GGCC 2 cut(s) 185, 947
ApeKI GCWGC 3 cut(s) 18, 156, 395
AseI ATTAAT 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 355
AspLEI GCGC 1 cut(s) 574
AspS9I GGNCC 1 cut(s) 947
AsuHPI GGTGA 3 cut(s) 46, 79, 818
AsuII TTCGAA 1 cut(s) 349
AxyI CCTNAGG 1 cut(s) 57
BanII GRGCYC 2 cut(s) 271, 585
BbsI GAAGAC 1 cut(s) 1032
Bbv12I GWGCWC 1 cut(s) 585
BbvI GCAGC 3 cut(s) 5, 143, 382
BccI CCATC 3 cut(s) 258, 373, 837
BceAI ACGGC 2 cut(s) 112, 613
BciT130I CCWGG 3 cut(s) 291, 656, 951
BclI TGATCA 2 cut(s) 757, 937
BcoDI GTCTC 2 cut(s) 57, 604
BfaI CTAG 1 cut(s) 440
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 2 cut(s) 150, 1006
BisI GCNGC 4 cut(s) 19, 157, 396, 713
BlsI GCNGC 4 cut(s) 20, 158, 397, 714
BmcAI AGTACT 3 cut(s) 774, 881, 1032
Bme1390I CCNGG 3 cut(s) 291, 656, 951
BmgBI CACGTC 1 cut(s) 625
BmgT120I GGNCC 1 cut(s) 947
BmiI GGNNCC 1 cut(s) 1021
BmrFI CCNGG 3 cut(s) 291, 656, 951
BmsI GCATC 2 cut(s) 476, 655
BpiI GAAGAC 1 cut(s) 1032
BplI GAGNNNNNCTC 2 cut(s) 196, 228
BpmI CTGGAG 2 cut(s) 198, 672
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 1 cut(s) 468
Bsa29I ATCGAT 1 cut(s) 543
BsaBI GATNNNNATC 4 cut(s) 759, 762, 822, 939
BsaI GGTCTC 2 cut(s) 57, 604
BsaJI CCNNGG 3 cut(s) 94, 629, 693
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 247, 595
Bse1I ACTGG 1 cut(s) 326
Bse21I CCTNAGG 1 cut(s) 57
Bse8I GATNNNNATC 4 cut(s) 759, 762, 822, 939
BseBI CCWGG 3 cut(s) 291, 656, 951
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 3 cut(s) 94, 629, 693
BseGI GGATG 1 cut(s) 940
BseJI GATNNNNATC 4 cut(s) 759, 762, 822, 939
BseLI CCNNNNNNNGG 3 cut(s) 31, 247, 595
BseMII CTCAG 2 cut(s) 48, 114
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 8 cut(s) 657, 660, 663, 666, 669, 672, 675, 824
BseXI GCAGC 3 cut(s) 5, 143, 382
BseYI CCCAGC 1 cut(s) 131
BsgI GTGCAG 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 574
BshFI GGCC 2 cut(s) 187, 949
BshVI ATCGAT 1 cut(s) 543
BsiHKAI GWGCWC 1 cut(s) 585
BslFI GGGAC 3 cut(s) 104, 853, 926
BslI CCNNNNNNNGG 3 cut(s) 31, 247, 595
BsmAI GTCTC 2 cut(s) 57, 604
BsmFI GGGAC 3 cut(s) 104, 853, 926
BsnI GGCC 2 cut(s) 187, 949
Bso31I GGTCTC 2 cut(s) 57, 604
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 271, 585
Bsp19I CCATGG 1 cut(s) 693
BspACI CCGC 2 cut(s) 393, 713
BspANI GGCC 2 cut(s) 187, 949
BspCNI CTCAG 2 cut(s) 49, 115
BspDI ATCGAT 1 cut(s) 543
BspFNI CGCG 1 cut(s) 574
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 1 cut(s) 1021
BspMAI CTGCAG 1 cut(s) 161
BspMI ACCTGC 2 cut(s) 150, 1006
BspPI GGATC 3 cut(s) 341, 843, 961
BspQI GCTCTTC 2 cut(s) 590, 666
BspT104I TTCGAA 1 cut(s) 349
BspTNI GGTCTC 2 cut(s) 57, 604
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 94, 629, 693
BssT1I CCWWGG 1 cut(s) 693
Bst2UI CCWGG 3 cut(s) 291, 656, 951
Bst4CI ACNGT 1 cut(s) 879
Bst6I CTCTTC 6 cut(s) 32, 193, 216, 508, 590, 666
BstAPI GCANNNNNTGC 1 cut(s) 404
BstBI TTCGAA 1 cut(s) 349
BstDEI CTNAG 2 cut(s) 57, 123
BstDSI CCRYGG 3 cut(s) 94, 629, 693
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 1 cut(s) 940
BstFNI CGCG 1 cut(s) 574
BstHHI GCGC 1 cut(s) 574
BstMAI GTCTC 2 cut(s) 57, 604
BstMWI GCNNNNNNNGC 3 cut(s) 275, 404, 580
BstNI CCWGG 3 cut(s) 291, 656, 951
BstNSI RCATGY 1 cut(s) 742
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 3 cut(s) 289, 654, 949
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 574
BstV1I GCAGC 3 cut(s) 5, 143, 382
BstV2I GAAGAC 1 cut(s) 1032
BstXI CCANNNNNNTGG 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 543
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 2 cut(s) 187, 949
BsuTUI ATCGAT 1 cut(s) 543
BtgI CCRYGG 3 cut(s) 94, 629, 693
BtrI CACGTC 1 cut(s) 625
BtsCI GGATG 1 cut(s) 940
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 1 cut(s) 534
BveI ACCTGC 2 cut(s) 150, 1006
CciI TCATGA 1 cut(s) 979
CfoI GCGC 1 cut(s) 574
Cfr13I GGNCC 1 cut(s) 947
ClaI ATCGAT 1 cut(s) 543
Csp6I GTAC 4 cut(s) 773, 880, 995, 1031
CviAII CATG 9 cut(s) 245, 330, 523, 694, 730, 739, 799, 891, 980
CviQI GTAC 4 cut(s) 773, 880, 995, 1031
DdeI CTNAG 2 cut(s) 57, 123
Eam1104I CTCTTC 6 cut(s) 32, 193, 216, 508, 590, 666
EarI CTCTTC 6 cut(s) 32, 193, 216, 508, 590, 666
Ecl136II GAGCTC 1 cut(s) 583
Eco130I CCWWGG 1 cut(s) 693
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 271, 585
Eco31I GGTCTC 2 cut(s) 57, 604
Eco53kI GAGCTC 1 cut(s) 583
Eco81I CCTNAGG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 5
EcoICRI GAGCTC 1 cut(s) 583
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 3 cut(s) 289, 654, 949
EcoT14I CCWWGG 1 cut(s) 693
EcoT38I GRGCYC 2 cut(s) 271, 585
ErhI CCWWGG 1 cut(s) 693
FaeI CATG 9 cut(s) 248, 333, 526, 697, 733, 742, 802, 894, 983
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 3 cut(s) 104, 853, 926
FatI CATG 9 cut(s) 244, 329, 522, 693, 729, 738, 798, 890, 979
FbaI TGATCA 2 cut(s) 757, 937
Fnu4HI GCNGC 4 cut(s) 19, 157, 396, 713
FokI GGATG 1 cut(s) 947
FriOI GRGCYC 2 cut(s) 271, 585
Fsp4HI GCNGC 4 cut(s) 19, 157, 396, 713
FspBI CTAG 1 cut(s) 440
GlaI GCGC 1 cut(s) 573
GluI GCNGC 4 cut(s) 19, 157, 396, 713
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 2 cut(s) 198, 672
HaeIII GGCC 2 cut(s) 187, 949
HhaI GCGC 1 cut(s) 574
Hin1II CATG 9 cut(s) 248, 333, 526, 697, 733, 742, 802, 894, 983
Hin6I GCGC 1 cut(s) 572
HinP1I GCGC 1 cut(s) 572
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 4 cut(s) 346, 425, 475, 634
HphI GGTGA 3 cut(s) 46, 79, 818
Hpy188I TCNGA 3 cut(s) 80, 622, 639
Hpy188III TCNNGA 7 cut(s) 56, 215, 313, 455, 485, 833, 980
HpyAV CCTTC 4 cut(s) 25, 251, 366, 1059
HpyCH4III ACNGT 1 cut(s) 879
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 6 cut(s) 21, 159, 398, 539, 1001, 1028
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 404, 580
HpyF3I CTNAG 2 cut(s) 57, 123
HpySE526I ACGT 1 cut(s) 624
Hsp92II CATG 9 cut(s) 248, 333, 526, 697, 733, 742, 802, 894, 983
HspAI GCGC 1 cut(s) 572
Ksp22I TGATCA 2 cut(s) 757, 937
LguI GCTCTTC 2 cut(s) 590, 666
LmnI GCTCC 2 cut(s) 111, 1019
Lsp1109I GCAGC 3 cut(s) 5, 143, 382
LweI GCATC 2 cut(s) 476, 655
MaeI CTAG 1 cut(s) 440
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 2 cut(s) 5, 794
MfeI CAATTG 2 cut(s) 548, 787
MhlI GDGCHC 2 cut(s) 271, 585
MluCI AATT 4 cut(s) 175, 227, 548, 787
MlyI GAGTC 1 cut(s) 419
MmeI TCCRAC 3 cut(s) 89, 802, 949
MroXI GAANNNNTTC 1 cut(s) 355
MseI TTAA 1 cut(s) 174
MslI CAYNNNNRTG 2 cut(s) 99, 803
MspA1I CMGCKG 1 cut(s) 395
MspR9I CCNGG 3 cut(s) 291, 656, 951
MunI CAATTG 2 cut(s) 548, 787
MvaI CCWGG 3 cut(s) 291, 656, 951
MvnI CGCG 1 cut(s) 574
MwoI GCNNNNNNNGC 3 cut(s) 275, 404, 580
NcoI CCATGG 1 cut(s) 693
NlaIII CATG 9 cut(s) 248, 333, 526, 697, 733, 742, 802, 894, 983
NlaIV GGNNCC 1 cut(s) 1021
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 1 cut(s) 742
NspV TTCGAA 1 cut(s) 349
PagI TCATGA 1 cut(s) 979
PceI AGGCCT 1 cut(s) 187
PciSI GCTCTTC 2 cut(s) 590, 666
PdmI GAANNNNTTC 1 cut(s) 355
PfeI GAWTC 3 cut(s) 346, 475, 634
PflMI CCANNNNNTGG 1 cut(s) 595
PkrI GCNGC 4 cut(s) 20, 158, 397, 714
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
PshBI ATTAAT 1 cut(s) 174
PsiI TTATAA 2 cut(s) 420, 1060
Psp124BI GAGCTC 1 cut(s) 585
Psp6I CCWGG 3 cut(s) 289, 654, 949
PspEI GGTNACC 1 cut(s) 5
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 3 cut(s) 289, 654, 949
PspN4I GGNNCC 1 cut(s) 1021
PspPI GGNCC 1 cut(s) 947
PstI CTGCAG 1 cut(s) 161
RsaI GTAC 4 cut(s) 774, 881, 996, 1032
RsaNI GTAC 4 cut(s) 773, 880, 995, 1031
RseI CAYNNNNRTG 2 cut(s) 99, 803
SacI GAGCTC 1 cut(s) 585
SapI GCTCTTC 2 cut(s) 590, 666
SaqAI TTAA 1 cut(s) 174
SatI GCNGC 4 cut(s) 19, 157, 396, 713
Sau96I GGNCC 1 cut(s) 947
ScaI AGTACT 3 cut(s) 774, 881, 1032
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 3 cut(s) 291, 656, 951
SduI GDGCHC 2 cut(s) 271, 585
SfaNI GCATC 2 cut(s) 476, 655
SfcI CTRYAG 1 cut(s) 157
SfuI TTCGAA 1 cut(s) 349
SmiMI CAYNNNNRTG 2 cut(s) 99, 803
SmlI CTYRAG 1 cut(s) 483
SmoI CTYRAG 1 cut(s) 483
Sse9I AATT 4 cut(s) 175, 227, 548, 787
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 2 cut(s) 393, 713
SspI AATATT 1 cut(s) 988
SspMI CTAG 1 cut(s) 440
SstI GAGCTC 1 cut(s) 585
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 3 cut(s) 289, 654, 949
StyI CCWWGG 1 cut(s) 693
TaaI ACNGT 1 cut(s) 879
TaiI ACGT 1 cut(s) 627
TaqI TCGA 4 cut(s) 349, 371, 377, 543
TasI AATT 4 cut(s) 175, 227, 548, 787
TatI WGTACW 3 cut(s) 772, 879, 1030
TauI GCSGC 1 cut(s) 715
TfiI GAWTC 3 cut(s) 346, 475, 634
Tru1I TTAA 1 cut(s) 174
Tru9I TTAA 1 cut(s) 174
TscAI CASTG 1 cut(s) 541
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 3 cut(s) 18, 156, 395
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 7 cut(s) 233, 511, 870, 935, 996, 1032, 1041
TspRI CASTG 1 cut(s) 541
Van91I CCANNNNNTGG 1 cut(s) 595
VspI ATTAAT 1 cut(s) 174
XceI RCATGY 1 cut(s) 742
XmnI GAANNNNTTC 1 cut(s) 355
XspI CTAG 1 cut(s) 440
ZrmI AGTACT 3 cut(s) 774, 881, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.