Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

11206965 .. 11209513

Gene Structure 2549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G105700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGGCCACCATTCTTGTTGCAACCAGCAGAAGGTTAAGAGAGGCCTTTGGTCCCCTGAGGAAGATGAGAAGCTCATCAGATACATCACCACCCATGGCTATGGCTGCTGGAGTGAAGTCCCTGAGAAAGCTGGGCTTCAAAGGTGTGGAAAGAGCTGCCGCTTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGGAGGTTTACTCCAGAAGAAGAGAAATTGATTATTAGCCTCCATGGGGTTGTAGGCAACAGATGGGCTCATATAGCAAGCCACCTACCTGGAAGAACAGACAATGAGATCAAGAACTATTGGAATTCATGGATCAAAAAGAAGATTAGAAAGCCTTCCACAACTTCAAGCACCACAATAAGTCCTTCTTCTAGTGCTGATCATCTTCAGCATATGATTCCCCAGATGGGTAATTATATGATCAATTCAAACCAACTAGATTTTGCAAATCAAGATTTGCCAACCCCAAAGCCCCAAGCTCATCAAGAAACCCTATTCTCCTCAACATGCCCTCTCTTCATGTTTGATACAAGTCCCAATATGGAAGCAGCTCCAGAGAATTACAGTTCACGTGCAGAGCTTTTCCAGGACATGGTCTCCGCGGCGGGTTTGAGCTCATCTGAGCCGTGGAATCTGAGCCAGCATCAAGTCCAGGCCTTCCCGCCTCCGGCAATGTCATTCAGTACAACAAGTGCTACCAGTGCTACCATGGACACCAACTATTTGCCGCCGTTGATCGAGAACATGGACAACAACATGCTGCCCAATATTGATCATCAAGTTCATCATCAATCTTGTAACATTAATCTTGATGAGGAGGGAGATCATCAGATGGCCTTGGAGTGCTTGATGCAAAGGCAGGAGCTGAATGAATGGGTTGTGTCCCAGCAACAGTGTTCTAACTATCTATTTTGGGACACAGTTCTTGTTGGAGAAGAAGAACACAATAATATTGCACAGCCTGCCGCTTCATCAAATGCAGGAGCTAATACCCTACTGTCTTCTTTTCCTTCATCTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

348

Amino Acids

39.25

Weight (kDa)

5.73

Isoelectric Point (pI)

62.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	613
AccII	CGCG	1 cut(s)	623
AciI	CCGC	7 cut(s)	160, 621, 623, 626, 683, 749, 987
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	392
AcvI	CACGTG	1 cut(s)	593
AfaI	GTAC	1 cut(s)	706
AfiI	CCNNNNNNNGG	5 cut(s)	31, 247, 428, 613, 688
AgsI	TTSAA	3 cut(s)	140, 369, 450
AjnI	CCWGG	3 cut(s)	289, 606, 672
AluBI	AGCT	9 cut(s)	73, 131, 156, 500, 572, 601, 636, 886, 1007
AluI	AGCT	9 cut(s)	73, 131, 156, 500, 572, 601, 636, 886, 1007
Alw21I	GWGCWC	1 cut(s)	638
Alw26I	GTCTC	1 cut(s)	622
AlwI	GGATC	1 cut(s)	341
AlwNI	CAGNNNCTG	1 cut(s)	886
AoxI	GGCC	5 cut(s)	4, 43, 185, 675, 855
ApeKI	GCWGC	4 cut(s)	105, 156, 569, 781
ApoI	RAATTY	1 cut(s)	325
AseI	ATTAAT	2 cut(s)	174, 825
Asp700I	GAANNNNTTC	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	4, 51
AsuHPI	GGTGA	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	57
BanII	GRGCYC	2 cut(s)	271, 638
BbrPI	CACGTG	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	1014
Bbv12I	GWGCWC	1 cut(s)	638
BbvI	GCAGC	4 cut(s)	92, 143, 581, 768
BccI	CCATC	4 cut(s)	162, 258, 421, 847
BceAI	ACGGC	2 cut(s)	631, 736
BciT130I	CCWGG	3 cut(s)	291, 608, 674
BclI	TGATCA	3 cut(s)	400, 441, 793
BcoDI	GTCTC	1 cut(s)	622
BfaI	CTAG	2 cut(s)	393, 458
BisI	GCNGC	8 cut(s)	106, 157, 160, 570, 624, 749, 782, 987
BlsI	GCNGC	8 cut(s)	107, 158, 161, 571, 625, 750, 783, 988
Bme1390I	CCNGG	3 cut(s)	291, 608, 674
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	2 cut(s)	4, 51
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	3 cut(s)	291, 608, 674
BmsI	GCATC	2 cut(s)	673, 861
BpiI	GAAGAC	1 cut(s)	1014
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	3 cut(s)	130, 198, 558
BpuEI	CTTGAG	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	622
BsaJI	CCNNGG	6 cut(s)	94, 244, 621, 647, 729, 858
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 247, 428, 613, 688
Bse1I	ACTGG	1 cut(s)	720
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	699
BseBI	CCWGG	3 cut(s)	291, 608, 674
BseDI	CCNNGG	6 cut(s)	94, 244, 621, 647, 729, 858
BseLI	CCNNNNNNNGG	5 cut(s)	31, 247, 428, 613, 688
BseMI	GCAATG	1 cut(s)	699
BseMII	CTCAG	4 cut(s)	48, 114, 633, 647
BseNI	ACTGG	1 cut(s)	720
BseRI	GAGGAG	2 cut(s)	511, 851
BseXI	GCAGC	4 cut(s)	92, 143, 581, 768
BseYI	CCCAGC	2 cut(s)	131, 906
BsgI	GTGCAG	1 cut(s)	615
Bsh1236I	CGCG	1 cut(s)	623
BshFI	GGCC	5 cut(s)	6, 45, 187, 677, 857
BsiHKAI	GWGCWC	1 cut(s)	638
BsiSI	CCGG	1 cut(s)	689
BslFI	GGGAC	5 cut(s)	37, 104, 540, 889, 950
BslI	CCNNNNNNNGG	5 cut(s)	31, 247, 428, 613, 688
BsmAI	GTCTC	1 cut(s)	622
BsmFI	GGGAC	5 cut(s)	37, 104, 540, 889, 950
BsnI	GGCC	5 cut(s)	6, 45, 187, 677, 857
Bso31I	GGTCTC	1 cut(s)	622
Bsp1286I	GDGCHC	2 cut(s)	271, 638
Bsp143I	GATC	7 cut(s)	309, 333, 400, 441, 756, 793, 844
Bsp19I	CCATGG	3 cut(s)	94, 244, 729
BspACI	CCGC	7 cut(s)	160, 621, 623, 626, 683, 749, 987
BspANI	GGCC	5 cut(s)	6, 45, 187, 677, 857
BspCNI	CTCAG	4 cut(s)	49, 115, 634, 648
BspFNI	CGCG	1 cut(s)	623
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	341
BspTNI	GGTCTC	1 cut(s)	622
BsrDI	GCAATG	1 cut(s)	699
BsrI	ACTGG	1 cut(s)	720
BssECI	CCNNGG	6 cut(s)	94, 244, 621, 647, 729, 858
BssMI	GATC	7 cut(s)	309, 333, 400, 441, 756, 793, 844
BssT1I	CCWWGG	4 cut(s)	94, 244, 729, 858
Bst2UI	CCWGG	3 cut(s)	291, 608, 674
Bst4CI	ACNGT	4 cut(s)	587, 915, 943, 1020
Bst6I	CTCTTC	3 cut(s)	193, 216, 542
BstAPI	GCANNNNNTGC	1 cut(s)	983
BstBAI	YACGTR	1 cut(s)	593
BstC8I	GCNNGC	3 cut(s)	280, 662, 984
BstDEI	CTNAG	4 cut(s)	57, 123, 642, 656
BstDSI	CCRYGG	5 cut(s)	94, 244, 621, 647, 729
BstFNI	CGCG	1 cut(s)	623
BstKTI	GATC	7 cut(s)	312, 336, 403, 444, 759, 796, 847
BstMAI	GTCTC	1 cut(s)	622
BstMBI	GATC	7 cut(s)	309, 333, 400, 441, 756, 793, 844
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 275, 722, 983
BstNI	CCWGG	3 cut(s)	291, 608, 674
BstNSI	RCATGY	2 cut(s)	531, 781
BstSCI	CCNGG	3 cut(s)	289, 606, 672
BstUI	CGCG	1 cut(s)	623
BstV1I	GCAGC	4 cut(s)	92, 143, 581, 768
BstV2I	GAAGAC	1 cut(s)	1014
BstXI	CCANNNNNNTGG	2 cut(s)	101, 290
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	5 cut(s)	6, 45, 187, 677, 857
BtgI	CCRYGG	5 cut(s)	94, 244, 621, 647, 729
BtsIMutI	CAGTG	2 cut(s)	727, 920
Cac8I	GCNNGC	3 cut(s)	280, 662, 984
CaiI	CAGNNNCTG	1 cut(s)	886
Cfr13I	GGNCC	2 cut(s)	4, 51
Cfr42I	CCGCGG	1 cut(s)	624
Csp6I	GTAC	1 cut(s)	705
CspCI	CAANNNNNGTGG	1 cut(s)	31
CviAII	CATG	9 cut(s)	95, 245, 330, 528, 541, 613, 730, 766, 778
CviQI	GTAC	1 cut(s)	705
DdeI	CTNAG	4 cut(s)	57, 123, 642, 656
DpnI	GATC	7 cut(s)	311, 335, 402, 443, 758, 795, 846
DpnII	GATC	7 cut(s)	309, 333, 400, 441, 756, 793, 844
Eam1104I	CTCTTC	3 cut(s)	193, 216, 542
EarI	CTCTTC	3 cut(s)	193, 216, 542
Ecl136II	GAGCTC	1 cut(s)	636
Eco130I	CCWWGG	4 cut(s)	94, 244, 729, 858
Eco147I	AGGCCT	3 cut(s)	45, 187, 677
Eco24I	GRGCYC	2 cut(s)	271, 638
Eco31I	GGTCTC	1 cut(s)	622
Eco47I	GGWCC	1 cut(s)	51
Eco53kI	GAGCTC	1 cut(s)	636
Eco57I	CTGAAG	1 cut(s)	392
Eco72I	CACGTG	1 cut(s)	593
Eco81I	CCTNAGG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	636
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	3 cut(s)	289, 606, 672
EcoT14I	CCWWGG	4 cut(s)	94, 244, 729, 858
EcoT38I	GRGCYC	2 cut(s)	271, 638
ErhI	CCWWGG	4 cut(s)	94, 244, 729, 858
FaeI	CATG	9 cut(s)	98, 248, 333, 531, 544, 616, 733, 769, 781
FalI	AAGNNNNNCTT	4 cut(s)	120, 152, 373, 405
FaqI	GGGAC	5 cut(s)	37, 104, 540, 889, 950
FatI	CATG	9 cut(s)	94, 244, 329, 527, 540, 612, 729, 765, 777
FauI	CCCGC	2 cut(s)	619, 690
FauNDI	CATATG	1 cut(s)	414
FbaI	TGATCA	3 cut(s)	400, 441, 793
Fnu4HI	GCNGC	8 cut(s)	106, 157, 160, 570, 624, 749, 782, 987
FriOI	GRGCYC	2 cut(s)	271, 638
Fsp4HI	GCNGC	8 cut(s)	106, 157, 160, 570, 624, 749, 782, 987
FspBI	CTAG	2 cut(s)	393, 458
GluI	GCNGC	8 cut(s)	106, 157, 160, 570, 624, 749, 782, 987
GsaI	CCCAGC	2 cut(s)	135, 910
GsuI	CTGGAG	3 cut(s)	130, 198, 558
HaeIII	GGCC	5 cut(s)	6, 45, 187, 677, 857
HapII	CCGG	1 cut(s)	689
Hin1II	CATG	9 cut(s)	98, 248, 333, 531, 544, 616, 733, 769, 781
HinfI	GANTC	2 cut(s)	418, 652
HpaII	CCGG	1 cut(s)	689
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	2 cut(s)	210, 590
Hpy188I	TCNGA	4 cut(s)	80, 643, 657, 852
Hpy188III	TCNNGA	7 cut(s)	215, 313, 473, 506, 575, 760, 830
Hpy8I	GTNNAC	2 cut(s)	210, 590
HpyAV	CCTTC	5 cut(s)	25, 366, 396, 688, 1041
HpyCH4III	ACNGT	4 cut(s)	587, 915, 943, 1020
HpyCH4IV	ACGT	1 cut(s)	592
HpyCH4V	TGCA	6 cut(s)	21, 467, 596, 874, 977, 1001
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 275, 722, 983
HpyF3I	CTNAG	4 cut(s)	57, 123, 642, 656
HpySE526I	ACGT	1 cut(s)	592
Hsp92II	CATG	9 cut(s)	98, 248, 333, 531, 544, 616, 733, 769, 781
Ksp22I	TGATCA	3 cut(s)	400, 441, 793
KspI	CCGCGG	1 cut(s)	624
Kzo9I	GATC	7 cut(s)	309, 333, 400, 441, 756, 793, 844
LmnI	GCTCC	3 cut(s)	577, 883, 1004
Lsp1109I	GCAGC	4 cut(s)	92, 143, 581, 768
LweI	GCATC	2 cut(s)	673, 861
MaeI	CTAG	2 cut(s)	393, 458
MaeII	ACGT	1 cut(s)	592
MaeIII	GTNAC	1 cut(s)	818
MalI	GATC	7 cut(s)	311, 335, 402, 443, 758, 795, 846
MboI	GATC	7 cut(s)	309, 333, 400, 441, 756, 793, 844
MhlI	GDGCHC	2 cut(s)	271, 638
MluCI	AATT	6 cut(s)	175, 227, 325, 433, 445, 580
MmeI	TCCRAC	1 cut(s)	931
MroXI	GAANNNNTTC	1 cut(s)	355
MseI	TTAA	3 cut(s)	36, 174, 825
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	623
MspI	CCGG	1 cut(s)	689
MspR9I	CCNGG	3 cut(s)	291, 608, 674
MvaI	CCWGG	3 cut(s)	291, 608, 674
MvnI	CGCG	1 cut(s)	623
MwoI	GCNNNNNNNGC	4 cut(s)	105, 275, 722, 983
NcoI	CCATGG	3 cut(s)	94, 244, 729
NdeI	CATATG	1 cut(s)	414
NdeII	GATC	7 cut(s)	309, 333, 400, 441, 756, 793, 844
NlaIII	CATG	9 cut(s)	98, 248, 333, 531, 544, 616, 733, 769, 781
NlaIV	GGNNCC	1 cut(s)	53
NspI	RCATGY	2 cut(s)	531, 781
PceI	AGGCCT	3 cut(s)	45, 187, 677
PdmI	GAANNNNTTC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	418, 652
PflFI	GACNNNGTC	1 cut(s)	614
PflMI	CCANNNNNTGG	1 cut(s)	613
PfoI	TCCNGGA	1 cut(s)	606
PkrI	GCNGC	8 cut(s)	107, 158, 161, 571, 625, 750, 783, 988
PmaCI	CACGTG	1 cut(s)	593
PmlI	CACGTG	1 cut(s)	593
Ppu21I	YACGTR	1 cut(s)	593
PshBI	ATTAAT	2 cut(s)	174, 825
Psp124BI	GAGCTC	1 cut(s)	638
Psp6I	CCWGG	3 cut(s)	289, 606, 672
PspCI	CACGTG	1 cut(s)	593
PspFI	CCCAGC	2 cut(s)	131, 906
PspGI	CCWGG	3 cut(s)	289, 606, 672
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	2 cut(s)	4, 51
PstNI	CAGNNNCTG	1 cut(s)	886
PsyI	GACNNNGTC	1 cut(s)	614
RsaI	GTAC	1 cut(s)	706
RsaNI	GTAC	1 cut(s)	705
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	638
SacII	CCGCGG	1 cut(s)	624
SaqAI	TTAA	3 cut(s)	36, 174, 825
SatI	GCNGC	8 cut(s)	106, 157, 160, 570, 624, 749, 782, 987
Sau3AI	GATC	7 cut(s)	309, 333, 400, 441, 756, 793, 844
Sau96I	GGNCC	2 cut(s)	4, 51
ScrFI	CCNGG	3 cut(s)	291, 608, 674
SduI	GDGCHC	2 cut(s)	271, 638
SfaNI	GCATC	2 cut(s)	673, 861
Sfr303I	CCGCGG	1 cut(s)	624
SgrBI	CCGCGG	1 cut(s)	624
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	6 cut(s)	175, 227, 325, 433, 445, 580
SseBI	AGGCCT	3 cut(s)	45, 187, 677
SsiI	CCGC	7 cut(s)	160, 621, 623, 626, 683, 749, 987
SspI	AATATT	2 cut(s)	790, 973
SspMI	CTAG	2 cut(s)	393, 458
SstI	GAGCTC	1 cut(s)	638
StuI	AGGCCT	3 cut(s)	45, 187, 677
StyD4I	CCNGG	3 cut(s)	289, 606, 672
StyI	CCWWGG	4 cut(s)	94, 244, 729, 858
TaaI	ACNGT	4 cut(s)	587, 915, 943, 1020
TaiI	ACGT	1 cut(s)	595
TaqI	TCGA	1 cut(s)	759
TasI	AATT	6 cut(s)	175, 227, 325, 433, 445, 580
TatI	WGTACW	1 cut(s)	704
TauI	GCSGC	4 cut(s)	162, 626, 751, 989
TfiI	GAWTC	2 cut(s)	418, 652
Tru1I	TTAA	3 cut(s)	36, 174, 825
Tru9I	TTAA	3 cut(s)	36, 174, 825
TscAI	CASTG	2 cut(s)	727, 920
TseI	GCWGC	4 cut(s)	105, 156, 569, 781
TspDTI	ATGAA	6 cut(s)	318, 529, 794, 906, 981, 1023
TspRI	CASTG	2 cut(s)	727, 920
Tth111I	GACNNNGTC	1 cut(s)	614
Van91I	CCANNNNNTGG	1 cut(s)	613
VpaK11BI	GGWCC	1 cut(s)	51
VspI	ATTAAT	2 cut(s)	174, 825
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	2 cut(s)	531, 781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	727
XmnI	GAANNNNTTC	1 cut(s)	355
XspI	CTAG	2 cut(s)	393, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.