Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010880.1

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Forward (+)

4303 .. 5533

Gene Structure 1231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010880.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atgggtcaccactactgctgcaaagaacggaaggttaagaggggcctttggtcccctgaggaagatgaaaagctgttgagatacatcactacctatggccatggatgttggagaaaagtccctgagcaagctgggctacaaaggtgtggtaagagctgtagactgagatggctcaattacttgagacctgatatcaaaagaggagtgtttacaccagatgaggagaaattgattattagactgcatggggttgtagggaacagatgggcgcatatcgcaaagtgtcttccaggaagaactgacaatgaaataaagaactactggaactcatggataaagaagaagctagagaagccttcttcaccaatgaccacatctgctgatcatcatcatcaatattcccaaatggcatgtcttaatccaaacaaccaagatcatattgtgaatcaaactttcattgcaaggccgtctgcataccccctatatatgtttgaggctgcttcacttgatcatgacggtactactcgtgcaaacaacattaatatcaatgtacatgtagatcagcatttcccactcaacgtgaactcgaacaatcttggggcatgcattttggatcggcataatgttcaaccccttccttctacagcaccatttacaaacatggatgcaaatctgttaatgccatccctcataggaagtactactactgttaatgcaaacatggttgaagtggaatcttgtagcaatattgacgaagaaggtgatatttcaatggagtgcttgcagagtcatcaggatttgattgcagtagttcattcccggcaacagcaaccgtgttcgaacttccatttttgctgggatactgttgaagaacaacatggaggggatgaaattgctgggccacttcatcgcaatacgggagctaatatgatgtcttcatctctcccatcctacctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

319

Amino Acids

36.27

Weight (kDa)

6.64

Isoelectric Point (pI)

62.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	1 cut(s)	97
AfaI	GTAC	3 cut(s)	520, 552, 700
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	4 cut(s)	629, 728, 771, 869
AjnI	CCWGG	1 cut(s)	289
AluBI	AGCT	5 cut(s)	73, 131, 156, 346, 923
AluI	AGCT	5 cut(s)	73, 131, 156, 346, 923
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	621
AoxI	GGCC	4 cut(s)	43, 97, 464, 899
ApeKI	GCWGC	2 cut(s)	18, 497
ArsI	GACNNNNNNTTYG	2 cut(s)	397, 429
AseI	ATTAAT	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	3 cut(s)	43, 51, 899
AsuC2I	CCSGG	1 cut(s)	820
AsuHPI	GGTGA	2 cut(s)	354, 773
AsuII	TTCGAA	1 cut(s)	839
AvaII	GGWCC	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	688, 720
BauI	CACGAG	1 cut(s)	525
BbsI	GAAGAC	2 cut(s)	278, 927
BbvI	GCAGC	2 cut(s)	5, 484
BccI	CCATC	4 cut(s)	162, 258, 691, 955
BceAI	ACGGC	1 cut(s)	451
BciT130I	CCWGG	1 cut(s)	291
BciVI	GTATCC	1 cut(s)	853
BclI	TGATCA	2 cut(s)	382, 508
BcnI	CCSGG	1 cut(s)	820
BcoDI	GTCTC	1 cut(s)	178
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	2 cut(s)	157, 642
BfuI	GTATCC	1 cut(s)	853
BisI	GCNGC	2 cut(s)	19, 498
BlsI	GCNGC	2 cut(s)	20, 499
BmcAI	AGTACT	1 cut(s)	700
Bme1390I	CCNGG	2 cut(s)	291, 820
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	3 cut(s)	43, 51, 899
BmiI	GGNNCC	2 cut(s)	44, 53
BmrFI	CCNGG	2 cut(s)	291, 820
BmsI	GCATC	1 cut(s)	655
BpiI	GAAGAC	2 cut(s)	278, 927
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	839
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	820
BsaBI	GATNNNNATC	2 cut(s)	387, 669
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	2 cut(s)	387, 669
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	5 cut(s)	110, 670, 683, 892, 947
BseJI	GATNNNNATC	2 cut(s)	387, 669
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	3 cut(s)	48, 114, 155
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	2 cut(s)	216, 236
BseXI	GCAGC	2 cut(s)	5, 484
BseYI	CCCAGC	3 cut(s)	131, 855, 896
BshFI	GGCC	4 cut(s)	45, 99, 466, 901
BsiSI	CCGG	1 cut(s)	820
BslFI	GGGAC	2 cut(s)	37, 104
BsmAI	GTCTC	1 cut(s)	178
BsmFI	GGGAC	2 cut(s)	37, 104
BsnI	GGCC	4 cut(s)	45, 99, 466, 901
Bso31I	GGTCTC	1 cut(s)	178
Bsp119I	TTCGAA	1 cut(s)	839
Bsp1407I	TGTACA	1 cut(s)	550
Bsp143I	GATC	5 cut(s)	382, 433, 508, 559, 613
Bsp19I	CCATGG	1 cut(s)	100
BspANI	GGCC	4 cut(s)	45, 99, 466, 901
BspCNI	CTCAG	3 cut(s)	49, 115, 156
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	44, 53
BspPI	GGATC	1 cut(s)	621
BspT104I	TTCGAA	1 cut(s)	839
BspTNI	GGTCTC	1 cut(s)	178
BsrDI	GCAATG	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	5 cut(s)	382, 433, 508, 559, 613
BssSI	CACGAG	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	4 cut(s)	518, 709, 834, 865
BstAUI	TGTACA	1 cut(s)	550
BstBI	TTCGAA	1 cut(s)	839
BstC8I	GCNNGC	3 cut(s)	129, 604, 782
BstDEI	CTNAG	3 cut(s)	57, 123, 164
BstDSI	CCRYGG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	5 cut(s)	110, 670, 683, 892, 947
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	5 cut(s)	385, 436, 511, 562, 616
BstMAI	GTCTC	1 cut(s)	178
BstMBI	GATC	5 cut(s)	382, 433, 508, 559, 613
BstMWI	GCNNNNNNNGC	3 cut(s)	133, 275, 352
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	3 cut(s)	414, 557, 606
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	2 cut(s)	289, 818
BstSFI	CTRYAG	2 cut(s)	157, 642
BstV1I	GCAGC	2 cut(s)	5, 484
BstV2I	GAAGAC	2 cut(s)	278, 927
Bsu36I	CCTNAGG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	853
BsuRI	GGCC	4 cut(s)	45, 99, 466, 901
BtgI	CCRYGG	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	893
BtsCI	GGATG	5 cut(s)	110, 670, 683, 892, 947
Cac8I	GCNNGC	3 cut(s)	129, 604, 782
CciI	TCATGA	1 cut(s)	511
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	3 cut(s)	43, 51, 899
Csp6I	GTAC	3 cut(s)	519, 551, 699
CviQI	GTAC	3 cut(s)	519, 551, 699
DdeI	CTNAG	3 cut(s)	57, 123, 164
DpnI	GATC	5 cut(s)	384, 435, 510, 561, 615
DpnII	GATC	5 cut(s)	382, 433, 508, 559, 613
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	51
Eco81I	CCTNAGG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	100
EcoT22I	ATGCAT	1 cut(s)	608
ErhI	CCWWGG	1 cut(s)	100
FaqI	GGGAC	2 cut(s)	37, 104
FbaI	TGATCA	2 cut(s)	382, 508
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	2 cut(s)	19, 498
FokI	GGATG	5 cut(s)	117, 670, 677, 899, 934
Fsp4HI	GCNGC	2 cut(s)	19, 498
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	2 cut(s)	19, 498
GsaI	CCCAGC	3 cut(s)	135, 859, 900
HaeIII	GGCC	4 cut(s)	45, 99, 466, 901
HapII	CCGG	1 cut(s)	820
HhaI	GCGC	1 cut(s)	271
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HinfI	GANTC	3 cut(s)	445, 734, 787
HpaII	CCGG	1 cut(s)	820
HphI	GGTGA	2 cut(s)	354, 773
Hpy166II	GTNNAC	3 cut(s)	161, 210, 583
Hpy188I	TCNGA	1 cut(s)	959
Hpy188III	TCNNGA	2 cut(s)	512, 794
Hpy8I	GTNNAC	3 cut(s)	161, 210, 583
HpyAV	CCTTC	5 cut(s)	25, 366, 644, 648, 752
HpyCH4III	ACNGT	4 cut(s)	518, 709, 834, 865
HpyCH4IV	ACGT	1 cut(s)	579
HpyF10VI	GCNNNNNNNGC	3 cut(s)	133, 275, 352
HpyF3I	CTNAG	3 cut(s)	57, 123, 164
HpySE526I	ACGT	1 cut(s)	579
HspAI	GCGC	1 cut(s)	269
Ksp22I	TGATCA	2 cut(s)	382, 508
Kzo9I	GATC	5 cut(s)	382, 433, 508, 559, 613
LmnI	GCTCC	1 cut(s)	920
Lsp1109I	GCAGC	2 cut(s)	5, 484
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	5 cut(s)	384, 435, 510, 561, 615
MboI	GATC	5 cut(s)	382, 433, 508, 559, 613
MboII	GAAGA	8 cut(s)	74, 278, 306, 351, 352, 767, 881, 927
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	3 cut(s)	175, 227, 891
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	796
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	7 cut(s)	33, 52, 194, 214, 487, 698, 875
Mox20I	TGGCCA	1 cut(s)	99
Mph1103I	ATGCAT	1 cut(s)	608
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	5 cut(s)	36, 417, 540, 677, 711
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	1 cut(s)	820
MspR9I	CCNGG	2 cut(s)	291, 820
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	3 cut(s)	133, 275, 352
NciI	CCSGG	1 cut(s)	820
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	5 cut(s)	382, 433, 508, 559, 613
NlaIV	GGNNCC	2 cut(s)	44, 53
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	608
NspI	RCATGY	3 cut(s)	414, 557, 606
NspV	TTCGAA	1 cut(s)	839
PaeI	GCATGC	1 cut(s)	606
PagI	TCATGA	1 cut(s)	511
PciI	ACATGT	1 cut(s)	553
PfeI	GAWTC	2 cut(s)	445, 734
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	20, 499
PleI	GAGTC	1 cut(s)	795
PpsI	GAGTC	1 cut(s)	795
PscI	ACATGT	1 cut(s)	553
PshBI	ATTAAT	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	5
PspFI	CCCAGC	3 cut(s)	131, 855, 896
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	44, 53
PspPI	GGNCC	3 cut(s)	43, 51, 899
RsaI	GTAC	3 cut(s)	520, 552, 700
RsaNI	GTAC	3 cut(s)	519, 551, 699
SaqAI	TTAA	5 cut(s)	36, 417, 540, 677, 711
SatI	GCNGC	2 cut(s)	19, 498
Sau3AI	GATC	5 cut(s)	382, 433, 508, 559, 613
Sau96I	GGNCC	3 cut(s)	43, 51, 899
ScaI	AGTACT	1 cut(s)	700
SchI	GAGTC	1 cut(s)	796
ScrFI	CCNGG	2 cut(s)	291, 820
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	2 cut(s)	157, 642
SfuI	TTCGAA	1 cut(s)	839
SinI	GGWCC	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
SphI	GCATGC	1 cut(s)	606
Sse9I	AATT	3 cut(s)	175, 227, 891
SspI	AATATT	2 cut(s)	398, 748
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	289, 818
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	4 cut(s)	518, 709, 834, 865
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	2 cut(s)	587, 839
TasI	AATT	3 cut(s)	175, 227, 891
TatI	WGTACW	2 cut(s)	550, 698
TfiI	GAWTC	2 cut(s)	445, 734
Tru1I	TTAA	5 cut(s)	36, 417, 540, 677, 711
Tru9I	TTAA	5 cut(s)	36, 417, 540, 677, 711
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	18, 497
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	7 cut(s)	81, 321, 445, 803, 896, 903, 927
TspGWI	ACGGA	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	51
VspI	ATTAAT	1 cut(s)	540
XceI	RCATGY	3 cut(s)	414, 557, 606
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	1 cut(s)	347
ZrmI	AGTACT	1 cut(s)	700
Zsp2I	ATGCAT	1 cut(s)	608

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.