Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

21847550 .. 21849238

Gene Structure 1689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1090000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGGTCACCACTATTGCTGCAAACAAAGAAAGGTTAAGAGAGGGCTTTGGTCCCCTGAGGAAGATGAAAAGCTCGTTAGACACATCACCACATATGGTCATGGCTGTTGGAGAAAAGTTCCTGAGCAAGCTGGGCTTCAAAGGTGCGGTAAGAGCTGCCGCTTGAGATGGCTCAATTACTTGAGACCTGATATCAAAAGAGGAGGGTTTACACCAGAGGAGGAGAAATTGATTATTAGACTTCATGGGGTTGTAGGAAACAGATGGACGCATATAGCAAAATGCCTACCCGGAAGAACCGACAATGAGATAAAGAACTACTGGAATTCATGGATTAAAAAGAAGCTAGAAAAGCCTTCTTCACCACCAACCACATCTCCTTCAAATCTTGATCATCAGCACAATTATCAAATGGGTTGCAGTTATCCAAACCAACAAGTTTTTATGAACCAAAATTTTATTACAAAACCTACAGCAGCTAGGGATCAAATCCTATACCCTTCTCCATACCCTCTATTCATGTTTGACACTGTTTCACTTGATGAGACTACCAACAACAACACTAATGTACGATCAGCCGATCAGCATTTTCCACTTGCCAGGTCGAATAATTCGAACAACAACGGAACATGGATTTTGGATCAGCAGCAACAGCATCAAGTTCAAGCCTTTCCTTCTTCTACAGCACCATTTACAAACAATAATATGGATGCACAGTTTCTACCATCCCTCCTAGGGTCAAGCATTGGAAACAATAACATGGTTCCTGTTGAAGTGGGGTCATGTAGCAATATTGATGATGAAGAAGAGATTTCAATGGAGTGCTTGCAAAGTACTACACAGGAGCTGAATGCATTGGTACATTCCCGCCAGGCTCAACAGTGTTCATCAAATAACTTTCATTTTTGGGACAGTGTTGAAGGACCATCTTCATCTAATTTGAGATCAGCTAATACATTGTCTTCTTTCCCATCATATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

328

Amino Acids

37.31

Weight (kDa)

8.02

Isoelectric Point (pI)

63.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	2.6e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	3.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 117	8.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	147, 160, 868
AclWI	GGATC	2 cut(s)	492, 648
AcsI	RAATTY	2 cut(s)	325, 454
AfaI	GTAC	3 cut(s)	570, 835, 861
AfiI	CCNNNNNNNGG	1 cut(s)	735
AgsI	TTSAA	6 cut(s)	140, 384, 665, 773, 816, 920
AjnI	CCWGG	2 cut(s)	599, 870
AluBI	AGCT	7 cut(s)	73, 131, 156, 346, 479, 847, 950
AluI	AGCT	7 cut(s)	73, 131, 156, 346, 479, 847, 950
Alw26I	GTCTC	2 cut(s)	178, 539
AlwI	GGATC	2 cut(s)	492, 648
AlwNI	CAGNNNCTG	1 cut(s)	847
ApeKI	GCWGC	4 cut(s)	18, 156, 476, 646
ApoI	RAATTY	2 cut(s)	325, 454
AspA2I	CCTAGG	1 cut(s)	733
AspS9I	GGNCC	2 cut(s)	51, 923
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	79, 354
AsuII	TTCGAA	1 cut(s)	614
AvaII	GGWCC	2 cut(s)	51, 923
AvrII	CCTAGG	1 cut(s)	733
AxyI	CCTNAGG	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	954
BbvI	GCAGC	4 cut(s)	5, 143, 488, 658
BccI	CCATC	5 cut(s)	162, 258, 733, 934, 979
BciT130I	CCWGG	2 cut(s)	601, 872
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	2 cut(s)	178, 539
BfaI	CTAG	3 cut(s)	347, 480, 734
BfmI	CTRYAG	2 cut(s)	471, 681
BisI	GCNGC	5 cut(s)	19, 157, 160, 477, 647
BlnI	CCTAGG	1 cut(s)	733
BlsI	GCNGC	5 cut(s)	20, 158, 161, 478, 648
BmcAI	AGTACT	1 cut(s)	835
Bme1390I	CCNGG	3 cut(s)	291, 601, 872
Bme18I	GGWCC	2 cut(s)	51, 923
BmgT120I	GGNCC	2 cut(s)	51, 923
BmiI	GGNNCC	2 cut(s)	53, 765
BmrFI	CCNGG	3 cut(s)	291, 601, 872
BmsI	GCATC	2 cut(s)	664, 700
BpiI	GAAGAC	1 cut(s)	954
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	614
BpuEI	CTTGAG	2 cut(s)	184, 202
BpuMI	CCSGG	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	733
BsaXI	ACNNNNNCTCC	4 cut(s)	361, 391, 714, 744
Bsc4I	CCNNNNNNNGG	1 cut(s)	735
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	57
BseBI	CCWGG	2 cut(s)	601, 872
BseDI	CCNNGG	1 cut(s)	733
BseGI	GGATG	2 cut(s)	715, 725
BseLI	CCNNNNNNNGG	1 cut(s)	735
BseMII	CTCAG	2 cut(s)	48, 114
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	3 cut(s)	216, 233, 236
BseXI	GCAGC	4 cut(s)	5, 143, 488, 658
BseYI	CCCAGC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	2 cut(s)	37, 923
BslI	CCNNNNNNNGG	1 cut(s)	735
BsmAI	GTCTC	2 cut(s)	178, 539
BsmFI	GGGAC	2 cut(s)	37, 923
BsmI	GAATGC	1 cut(s)	856
Bso31I	GGTCTC	1 cut(s)	178
Bsp119I	TTCGAA	1 cut(s)	614
Bsp143I	GATC	6 cut(s)	391, 484, 572, 580, 640, 944
BspACI	CCGC	3 cut(s)	147, 160, 868
BspCNI	CTCAG	2 cut(s)	49, 115
BspLI	GGNNCC	2 cut(s)	53, 765
BspPI	GGATC	2 cut(s)	492, 648
BspT104I	TTCGAA	1 cut(s)	614
BspTNI	GGTCTC	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	1 cut(s)	733
BssMI	GATC	6 cut(s)	391, 484, 572, 580, 640, 944
BssT1I	CCWWGG	1 cut(s)	733
Bst2UI	CCWGG	2 cut(s)	601, 872
Bst4CI	ACNGT	4 cut(s)	532, 717, 882, 914
Bst6I	CTCTTC	1 cut(s)	801
BstBI	TTCGAA	1 cut(s)	614
BstC8I	GCNNGC	2 cut(s)	129, 827
BstDEI	CTNAG	2 cut(s)	57, 123
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	2 cut(s)	715, 725
BstKTI	GATC	6 cut(s)	394, 487, 575, 583, 643, 947
BstMAI	GTCTC	2 cut(s)	178, 539
BstMBI	GATC	6 cut(s)	391, 484, 572, 580, 640, 944
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 153, 352, 652
BstNI	CCWGG	2 cut(s)	601, 872
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	3 cut(s)	289, 599, 870
BstSFI	CTRYAG	2 cut(s)	471, 681
BstV1I	GCAGC	4 cut(s)	5, 143, 488, 658
BstV2I	GAAGAC	1 cut(s)	954
Bsu36I	CCTNAGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	715, 725
BtsIMutI	CAGTG	3 cut(s)	528, 887, 919
Cac8I	GCNNGC	2 cut(s)	129, 827
CaiI	CAGNNNCTG	1 cut(s)	847
Cfr13I	GGNCC	2 cut(s)	51, 923
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	3 cut(s)	569, 834, 860
CviAII	CATG	7 cut(s)	101, 245, 330, 520, 630, 760, 783
CviQI	GTAC	3 cut(s)	569, 834, 860
DdeI	CTNAG	2 cut(s)	57, 123
DpnI	GATC	6 cut(s)	393, 486, 574, 582, 642, 946
DpnII	GATC	6 cut(s)	391, 484, 572, 580, 640, 944
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
Eco130I	CCWWGG	1 cut(s)	733
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	51, 923
Eco81I	CCTNAGG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	5
EcoO65I	GGTNACC	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	599, 870
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	733
EcoT22I	ATGCAT	1 cut(s)	856
ErhI	CCWWGG	1 cut(s)	733
FaeI	CATG	7 cut(s)	104, 248, 333, 523, 633, 763, 786
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	2 cut(s)	37, 923
FatI	CATG	7 cut(s)	100, 244, 329, 519, 629, 759, 782
FauI	CCCGC	1 cut(s)	875
FauNDI	CATATG	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	5 cut(s)	19, 157, 160, 477, 647
FokI	GGATG	2 cut(s)	712, 722
Fsp4HI	GCNGC	5 cut(s)	19, 157, 160, 477, 647
FspBI	CTAG	3 cut(s)	347, 480, 734
GluI	GCNGC	5 cut(s)	19, 157, 160, 477, 647
GsaI	CCCAGC	1 cut(s)	135
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	277
Hin1II	CATG	7 cut(s)	104, 248, 333, 523, 633, 763, 786
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	79, 354
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188III	TCNNGA	2 cut(s)	122, 389
Hpy8I	GTNNAC	1 cut(s)	210
HpyAV	CCTTC	5 cut(s)	366, 390, 510, 684, 914
HpyCH4III	ACNGT	4 cut(s)	532, 717, 882, 914
HpyCH4V	TGCA	5 cut(s)	21, 420, 713, 829, 854
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 153, 352, 652
HpyF3I	CTNAG	2 cut(s)	57, 123
Hsp92II	CATG	7 cut(s)	104, 248, 333, 523, 633, 763, 786
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	6 cut(s)	391, 484, 572, 580, 640, 944
LmnI	GCTCC	1 cut(s)	844
Lsp1109I	GCAGC	4 cut(s)	5, 143, 488, 658
LweI	GCATC	2 cut(s)	664, 700
MaeI	CTAG	3 cut(s)	347, 480, 734
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	6 cut(s)	393, 486, 574, 582, 642, 946
MboI	GATC	6 cut(s)	391, 484, 572, 580, 640, 944
MboII	GAAGA	8 cut(s)	74, 306, 351, 669, 815, 818, 921, 954
MluCI	AATT	7 cut(s)	175, 227, 325, 403, 454, 610, 937
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	8 cut(s)	35, 52, 194, 197, 211, 214, 522, 740
Mph1103I	ATGCAT	1 cut(s)	856
MseI	TTAA	2 cut(s)	36, 336
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	3 cut(s)	291, 601, 872
Mva1269I	GAATGC	1 cut(s)	856
MvaI	CCWGG	2 cut(s)	601, 872
MwoI	GCNNNNNNNGC	4 cut(s)	133, 153, 352, 652
NciI	CCSGG	1 cut(s)	291
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	6 cut(s)	391, 484, 572, 580, 640, 944
NlaIII	CATG	7 cut(s)	104, 248, 333, 523, 633, 763, 786
NlaIV	GGNNCC	2 cut(s)	53, 765
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	856
NspV	TTCGAA	1 cut(s)	614
PcsI	WCGNNNNNNNCGW	1 cut(s)	611
PctI	GAATGC	1 cut(s)	856
PkrI	GCNGC	5 cut(s)	20, 158, 161, 478, 648
Psp6I	CCWGG	2 cut(s)	599, 870
PspEI	GGTNACC	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	2 cut(s)	599, 870
PspN4I	GGNNCC	2 cut(s)	53, 765
PspPI	GGNCC	2 cut(s)	51, 923
PstNI	CAGNNNCTG	1 cut(s)	847
RsaI	GTAC	3 cut(s)	570, 835, 861
RsaNI	GTAC	3 cut(s)	569, 834, 860
SaqAI	TTAA	2 cut(s)	36, 336
SatI	GCNGC	5 cut(s)	19, 157, 160, 477, 647
Sau3AI	GATC	6 cut(s)	391, 484, 572, 580, 640, 944
Sau96I	GGNCC	2 cut(s)	51, 923
ScaI	AGTACT	1 cut(s)	835
ScrFI	CCNGG	3 cut(s)	291, 601, 872
SfaNI	GCATC	2 cut(s)	664, 700
SfcI	CTRYAG	2 cut(s)	471, 681
SfuI	TTCGAA	1 cut(s)	614
SinI	GGWCC	2 cut(s)	51, 923
SmlI	CTYRAG	2 cut(s)	163, 181
SmoI	CTYRAG	2 cut(s)	163, 181
Sse9I	AATT	7 cut(s)	175, 227, 325, 403, 454, 610, 937
SsiI	CCGC	3 cut(s)	147, 160, 868
SspI	AATATT	1 cut(s)	793
SspMI	CTAG	3 cut(s)	347, 480, 734
StyD4I	CCNGG	3 cut(s)	289, 599, 870
StyI	CCWWGG	1 cut(s)	733
TaaI	ACNGT	4 cut(s)	532, 717, 882, 914
TaqI	TCGA	2 cut(s)	605, 614
TasI	AATT	7 cut(s)	175, 227, 325, 403, 454, 610, 937
TatI	WGTACW	1 cut(s)	833
TauI	GCSGC	1 cut(s)	162
Tru1I	TTAA	2 cut(s)	36, 336
Tru9I	TTAA	2 cut(s)	36, 336
TscAI	CASTG	3 cut(s)	535, 887, 919
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	4 cut(s)	18, 156, 476, 646
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	9 cut(s)	81, 233, 318, 461, 508, 816, 876, 890, 921
TspGWI	ACGGA	1 cut(s)	639
TspRI	CASTG	3 cut(s)	535, 887, 919
VpaK11BI	GGWCC	2 cut(s)	51, 923
XapI	RAATTY	2 cut(s)	325, 454
XmaJI	CCTAGG	1 cut(s)	733
XspI	CTAG	3 cut(s)	347, 480, 734
ZrmI	AGTACT	1 cut(s)	835
Zsp2I	ATGCAT	1 cut(s)	856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.