Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

21819326 .. 21819934

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1089800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGGCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGGCTTTGGTCCCCTGAGGAAGATGAGAAACTGATCAGATACATCACAACTCATGGCTATGGCTGTTGGAGTGAAGTCCCAGAAAAAGCTGGTCATGGGCTTCAAAGGTGTGGTAAGAGCTGCCGCTTGAGATGGATTAATTATTTAAGGCCTGACATTAGAAGAGGGAGATTTACTCCAGAAGAAGAGAAATTGATTATTAGCCTCCATGGGGTTGTAGGCAACAGGTTTAATTTAACAAGCTGTATTATTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

100

Amino Acids

11.48

Weight (kDa)

9.21

Isoelectric Point (pI)

61.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 63	2.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 78	4.8e-14	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	6
AciI	CCGC	1 cut(s)	166
AfiI	CCNNNNNNNGG	2 cut(s)	31, 253
AgsI	TTSAA	1 cut(s)	146
AluBI	AGCT	4 cut(s)	131, 162, 285, 297
AluI	AGCT	4 cut(s)	131, 162, 285, 297
AoxI	GGCC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	18, 162
AseI	ATTAAT	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	5, 149
BccI	CCATC	1 cut(s)	168
BclI	TGATCA	1 cut(s)	75
BisI	GCNGC	3 cut(s)	19, 163, 166
BlsI	GCNGC	3 cut(s)	20, 164, 167
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	2 cut(s)	8, 53
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 253
Bse21I	CCTNAGG	1 cut(s)	57
BseDI	CCNNGG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	31, 253
BseMII	CTCAG	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	2 cut(s)	5, 149
BshFI	GGCC	1 cut(s)	193
BshNI	GGYRCC	1 cut(s)	6
BslFI	GGGAC	2 cut(s)	37, 104
BslI	CCNNNNNNNGG	2 cut(s)	31, 253
BsmFI	GGGAC	2 cut(s)	37, 104
BsnI	GGCC	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	75
Bsp19I	CCATGG	1 cut(s)	250
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	8, 53
BspT107I	GGYRCC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	1 cut(s)	75
BssT1I	CCWWGG	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	199, 222
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	250
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	5, 149
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	193
BtgI	CCRYGG	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	51
CviAII	CATG	3 cut(s)	95, 137, 251
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	199, 222
EarI	CTCTTC	2 cut(s)	199, 222
Eco130I	CCWWGG	1 cut(s)	250
Eco147I	AGGCCT	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	51
Eco81I	CCTNAGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	250
ErhI	CCWWGG	1 cut(s)	250
FaeI	CATG	3 cut(s)	98, 140, 254
FaiI	YATR	4 cut(s)	96, 102, 138, 252
FaqI	GGGAC	2 cut(s)	37, 104
FatI	CATG	3 cut(s)	94, 136, 250
FbaI	TGATCA	1 cut(s)	75
Fnu4HI	GCNGC	3 cut(s)	19, 163, 166
Fsp4HI	GCNGC	3 cut(s)	19, 163, 166
GluI	GCNGC	3 cut(s)	19, 163, 166
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	193
Hin1II	CATG	3 cut(s)	98, 140, 254
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	25
HpyCH4V	TGCA	1 cut(s)	21
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	3 cut(s)	98, 140, 254
Ksp22I	TGATCA	1 cut(s)	75
Kzo9I	GATC	1 cut(s)	75
LpnPI	CCDG	6 cut(s)	69, 117, 135, 207, 234, 253
Lsp1109I	GCAGC	2 cut(s)	5, 149
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	4 cut(s)	74, 216, 236, 239
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	3 cut(s)	181, 233, 274
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	4 cut(s)	35, 52, 200, 257
MseI	TTAA	5 cut(s)	36, 180, 188, 273, 278
MslI	CAYNNNNRTG	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	250
NdeII	GATC	1 cut(s)	75
NlaIII	CATG	3 cut(s)	98, 140, 254
NlaIV	GGNNCC	2 cut(s)	8, 53
PceI	AGGCCT	1 cut(s)	193
PkrI	GCNGC	3 cut(s)	20, 164, 167
PshBI	ATTAAT	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	8, 53
PspPI	GGNCC	1 cut(s)	51
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	5 cut(s)	36, 180, 188, 273, 278
SatI	GCNGC	3 cut(s)	19, 163, 166
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	7 cut(s)	36, 133, 152, 164, 272, 287, 299
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	3 cut(s)	181, 233, 274
SseBI	AGGCCT	1 cut(s)	193
SsiI	CCGC	1 cut(s)	166
StuI	AGGCCT	1 cut(s)	193
StyI	CCWWGG	1 cut(s)	250
TasI	AATT	3 cut(s)	181, 233, 274
TauI	GCSGC	1 cut(s)	168
Tru1I	TTAA	5 cut(s)	36, 180, 188, 273, 278
Tru9I	TTAA	5 cut(s)	36, 180, 188, 273, 278
TseI	GCWGC	2 cut(s)	18, 162
VpaK11BI	GGWCC	1 cut(s)	51
VspI	ATTAAT	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.