Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Forward (+)

14677193 .. 14678422

Gene Structure 1230 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17595

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGTCACCACTACTGCTGCAAAGAACGGAAGGTTAAGAGGGGCCTTTGGTCCCCTGAGGAAGATGAAAAGCTGTTGAGATACATCACTACCTATGGCCATGGATGTTGGAGAAAAGTCCCTGAGCAAGCTGGTCTCCGGCTACAAAGGTGCGGTAAGAGCTGTAGACTGAGATGGCTCAATTACTTGAGACCTGATATCAAAAGAGGAGTGTTTACACCAGATGAGGAGAAATTGATTATTAGACTGCATGGGGTTGTAGGGAACAGATGGGCGCATATCGCAAAGTGTCTTCCAGGAAGAACTGACAATGAAATAAAGAACTACTGGAACTCATGGATAAAGAAGAAGCTAGAGAAGCCTTCTTCACCAATGACCACATCTGCTGATCATCATCATCAATATTCCCAAATGGCATGTCTTAATCCAAACAACCAAGATCATATTGTGAATCAAACTTTCATTGCAAGGCCGTCTGCATACCCCCTATATATGTTTGAGGCTGCTTCACTTGATCATGATGGTACTACTCGTGCAAACAATATTAATATCAATGTACATGTAGATCAGCATTTCCCACTCAACGTGAACTCGAACAATCTTGGGGCATGGATTTTGGATCGGCATAATGTTCAACCCCTTCCTTCTACAGCACCATTTACAAACATGGATGCAAATCTGTTAATGCCATCCCTCATAGGAAGTACTACTGCTGTTAATGCAAACATGGTTGAAGTGGAATCTTGTAGCAATATTGATGAAGAAGGTGATATTTCAATGGAGTGCTTGCAGAGTCATCAGGATTTGATTGCAGTAGTTCATTCCCGGCAACAGCAACCGTGTTCGAACTTCCATTTTTGCTGGGATACTGTTGAAGAACAACATGGAGGGGATGAAATTGCTGGGCCACTTCATCGCAATACGGGAGCTAATATGATGTCTTCATCTCTCCCATCCTACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

321

Amino Acids

36.59

Weight (kDa)

6.8

Isoelectric Point (pI)

61.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 63	3.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 78	3.4e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 113	3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 120	3.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	166
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	1 cut(s)	627
AcoI	YGGCCR	1 cut(s)	97
AfaI	GTAC	3 cut(s)	526, 558, 706
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	4 cut(s)	635, 734, 777, 875
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	5 cut(s)	73, 131, 162, 352, 929
AluI	AGCT	5 cut(s)	73, 131, 162, 352, 929
Alw26I	GTCTC	2 cut(s)	140, 184
AlwI	GGATC	1 cut(s)	627
AoxI	GGCC	4 cut(s)	43, 97, 470, 905
ApeKI	GCWGC	2 cut(s)	18, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	403, 435
AseI	ATTAAT	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	277
AspS9I	GGNCC	3 cut(s)	43, 51, 905
AsuC2I	CCSGG	1 cut(s)	826
AsuHPI	GGTGA	2 cut(s)	360, 779
AsuII	TTCGAA	1 cut(s)	845
AvaII	GGWCC	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	99
BauI	CACGAG	1 cut(s)	531
BbsI	GAAGAC	2 cut(s)	284, 933
BbvI	GCAGC	2 cut(s)	5, 490
BccI	CCATC	5 cut(s)	168, 264, 515, 697, 961
BceAI	ACGGC	1 cut(s)	457
BciT130I	CCWGG	1 cut(s)	297
BciVI	GTATCC	1 cut(s)	859
BclI	TGATCA	2 cut(s)	388, 514
BcnI	CCSGG	1 cut(s)	826
BcoDI	GTCTC	2 cut(s)	140, 184
BfaI	CTAG	1 cut(s)	353
BfmI	CTRYAG	2 cut(s)	163, 648
BfuI	GTATCC	1 cut(s)	859
BisI	GCNGC	2 cut(s)	19, 504
BlsI	GCNGC	2 cut(s)	20, 505
BmcAI	AGTACT	1 cut(s)	706
Bme1390I	CCNGG	2 cut(s)	297, 826
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	3 cut(s)	43, 51, 905
BmiI	GGNNCC	2 cut(s)	44, 53
BmrFI	CCNGG	2 cut(s)	297, 826
BmsI	GCATC	1 cut(s)	661
BpiI	GAAGAC	2 cut(s)	284, 933
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	845
BpuEI	CTTGAG	1 cut(s)	208
BpuMI	CCSGG	1 cut(s)	826
BsaBI	GATNNNNATC	2 cut(s)	393, 675
BsaI	GGTCTC	2 cut(s)	140, 184
BsaJI	CCNNGG	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	332
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	2 cut(s)	393, 675
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	5 cut(s)	110, 676, 689, 898, 953
BseJI	GATNNNNATC	2 cut(s)	393, 675
BseMI	GCAATG	1 cut(s)	462
BseMII	CTCAG	3 cut(s)	48, 114, 161
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	2 cut(s)	222, 242
BseXI	GCAGC	2 cut(s)	5, 490
BseYI	CCCAGC	2 cut(s)	861, 902
BshFI	GGCC	4 cut(s)	45, 99, 472, 907
BsiSI	CCGG	2 cut(s)	139, 826
BslFI	GGGAC	2 cut(s)	37, 104
BsmAI	GTCTC	2 cut(s)	140, 184
BsmFI	GGGAC	2 cut(s)	37, 104
BsnI	GGCC	4 cut(s)	45, 99, 472, 907
Bso31I	GGTCTC	2 cut(s)	140, 184
Bsp119I	TTCGAA	1 cut(s)	845
Bsp1407I	TGTACA	1 cut(s)	556
Bsp143I	GATC	5 cut(s)	388, 439, 514, 565, 619
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	4 cut(s)	45, 99, 472, 907
BspCNI	CTCAG	3 cut(s)	49, 115, 162
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	44, 53
BspPI	GGATC	1 cut(s)	627
BspT104I	TTCGAA	1 cut(s)	845
BspTNI	GGTCTC	2 cut(s)	140, 184
BsrDI	GCAATG	1 cut(s)	462
BsrGI	TGTACA	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	5 cut(s)	388, 439, 514, 565, 619
BssSI	CACGAG	1 cut(s)	531
BssT1I	CCWWGG	1 cut(s)	100
Bst2BI	CACGAG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	840, 871
BstAUI	TGTACA	1 cut(s)	556
BstBI	TTCGAA	1 cut(s)	845
BstC8I	GCNNGC	2 cut(s)	129, 788
BstDEI	CTNAG	3 cut(s)	57, 123, 170
BstDSI	CCRYGG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	5 cut(s)	110, 676, 689, 898, 953
BstHHI	GCGC	1 cut(s)	277
BstKTI	GATC	5 cut(s)	391, 442, 517, 568, 622
BstMAI	GTCTC	2 cut(s)	140, 184
BstMBI	GATC	5 cut(s)	388, 439, 514, 565, 619
BstMWI	GCNNNNNNNGC	4 cut(s)	159, 281, 358, 719
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	2 cut(s)	420, 563
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	2 cut(s)	295, 824
BstSFI	CTRYAG	2 cut(s)	163, 648
BstV1I	GCAGC	2 cut(s)	5, 490
BstV2I	GAAGAC	2 cut(s)	284, 933
Bsu36I	CCTNAGG	1 cut(s)	57
BsuI	GTATCC	1 cut(s)	859
BsuRI	GGCC	4 cut(s)	45, 99, 472, 907
BtgI	CCRYGG	1 cut(s)	100
BtgZI	GCGATG	1 cut(s)	899
BtsCI	GGATG	5 cut(s)	110, 676, 689, 898, 953
Cac8I	GCNNGC	2 cut(s)	129, 788
CciI	TCATGA	1 cut(s)	517
CfoI	GCGC	1 cut(s)	277
Cfr13I	GGNCC	3 cut(s)	43, 51, 905
Csp6I	GTAC	3 cut(s)	525, 557, 705
CviQI	GTAC	3 cut(s)	525, 557, 705
DdeI	CTNAG	3 cut(s)	57, 123, 170
DpnI	GATC	5 cut(s)	390, 441, 516, 567, 621
DpnII	GATC	5 cut(s)	388, 439, 514, 565, 619
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	100
Eco31I	GGTCTC	2 cut(s)	140, 184
Eco32I	GATATC	1 cut(s)	199
Eco47I	GGWCC	1 cut(s)	51
Eco81I	CCTNAGG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	295
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaqI	GGGAC	2 cut(s)	37, 104
FbaI	TGATCA	2 cut(s)	388, 514
FblI	GTMKAC	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	19, 504
FokI	GGATG	5 cut(s)	117, 676, 683, 905, 940
Fsp4HI	GCNGC	2 cut(s)	19, 504
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	276
GluI	GCNGC	2 cut(s)	19, 504
GsaI	CCCAGC	2 cut(s)	865, 906
HaeIII	GGCC	4 cut(s)	45, 99, 472, 907
HapII	CCGG	2 cut(s)	139, 826
HhaI	GCGC	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	275
HinP1I	GCGC	1 cut(s)	275
HinfI	GANTC	3 cut(s)	451, 740, 793
HpaII	CCGG	2 cut(s)	139, 826
HphI	GGTGA	2 cut(s)	360, 779
Hpy166II	GTNNAC	3 cut(s)	167, 216, 589
Hpy188I	TCNGA	1 cut(s)	965
Hpy188III	TCNNGA	2 cut(s)	518, 800
Hpy8I	GTNNAC	3 cut(s)	167, 216, 589
HpyAV	CCTTC	5 cut(s)	25, 372, 650, 654, 758
HpyCH4III	ACNGT	2 cut(s)	840, 871
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	9 cut(s)	21, 250, 467, 479, 536, 674, 722, 790, 812
HpyF10VI	GCNNNNNNNGC	4 cut(s)	159, 281, 358, 719
HpyF3I	CTNAG	3 cut(s)	57, 123, 170
HpySE526I	ACGT	1 cut(s)	585
HspAI	GCGC	1 cut(s)	275
Ksp22I	TGATCA	2 cut(s)	388, 514
Kzo9I	GATC	5 cut(s)	388, 439, 514, 565, 619
LmnI	GCTCC	1 cut(s)	926
Lsp1109I	GCAGC	2 cut(s)	5, 490
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	5 cut(s)	390, 441, 516, 567, 621
MboI	GATC	5 cut(s)	388, 439, 514, 565, 619
MboII	GAAGA	8 cut(s)	74, 284, 312, 357, 358, 773, 887, 933
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	3 cut(s)	181, 233, 897
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	802
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	7 cut(s)	33, 52, 200, 220, 493, 704, 881
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	5 cut(s)	36, 423, 546, 683, 717
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	2 cut(s)	139, 826
MspR9I	CCNGG	2 cut(s)	297, 826
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	4 cut(s)	159, 281, 358, 719
NciI	CCSGG	1 cut(s)	826
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	5 cut(s)	388, 439, 514, 565, 619
NlaIV	GGNNCC	2 cut(s)	44, 53
NmuCI	GTSAC	1 cut(s)	5
NspI	RCATGY	2 cut(s)	420, 563
NspV	TTCGAA	1 cut(s)	845
PagI	TCATGA	1 cut(s)	517
PciI	ACATGT	1 cut(s)	559
PfeI	GAWTC	2 cut(s)	451, 740
PfoI	TCCNGGA	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	20, 505
PleI	GAGTC	1 cut(s)	801
PpsI	GAGTC	1 cut(s)	801
PscI	ACATGT	1 cut(s)	559
PshBI	ATTAAT	1 cut(s)	546
Psp6I	CCWGG	1 cut(s)	295
PspEI	GGTNACC	1 cut(s)	5
PspFI	CCCAGC	2 cut(s)	861, 902
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	44, 53
PspPI	GGNCC	3 cut(s)	43, 51, 905
RsaI	GTAC	3 cut(s)	526, 558, 706
RsaNI	GTAC	3 cut(s)	525, 557, 705
SaqAI	TTAA	5 cut(s)	36, 423, 546, 683, 717
SatI	GCNGC	2 cut(s)	19, 504
Sau3AI	GATC	5 cut(s)	388, 439, 514, 565, 619
Sau96I	GGNCC	3 cut(s)	43, 51, 905
ScaI	AGTACT	1 cut(s)	706
SchI	GAGTC	1 cut(s)	802
ScrFI	CCNGG	2 cut(s)	297, 826
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	2 cut(s)	163, 648
SfuI	TTCGAA	1 cut(s)	845
SinI	GGWCC	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	3 cut(s)	181, 233, 897
SsiI	CCGC	1 cut(s)	153
SspI	AATATT	3 cut(s)	404, 544, 754
SspMI	CTAG	1 cut(s)	353
StyD4I	CCNGG	2 cut(s)	295, 824
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	840, 871
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	2 cut(s)	593, 845
TasI	AATT	3 cut(s)	181, 233, 897
TatI	WGTACW	2 cut(s)	556, 704
TfiI	GAWTC	2 cut(s)	451, 740
Tru1I	TTAA	5 cut(s)	36, 423, 546, 683, 717
Tru9I	TTAA	5 cut(s)	36, 423, 546, 683, 717
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	18, 503
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	8 cut(s)	81, 327, 451, 774, 809, 902, 909, 933
TspGWI	ACGGA	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	51
VspI	ATTAAT	1 cut(s)	546
XceI	RCATGY	2 cut(s)	420, 563
XmiI	GTMKAC	1 cut(s)	166
XspI	CTAG	1 cut(s)	353
ZrmI	AGTACT	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.