Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

53426583 .. 53428996

Gene Structure 2414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGATTGTGTACAAATTTTCCGAAATTGGTAAGTATAAGAAGGAGGGGAACAGAGAAGAAGAAGGAAGAAGAGCAGGTATAATTGGCAAAGGCTTAATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTGAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAGCTCATCAGATACATCACCACCCATGGCTATGGTTGTTGGAGCGAAGTCCCTGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGCTGCAGGTTGAGGTGGATTAATTATTTGAGGCCCGATATTAGAAGAGGGAGATTTACTCCAGAAGAAGAGAAATTGATTATTAGCCTTCATGGGGTTGTAGGCAACAGATGGGCTCATATAGCAAGTCACCTGCCTGGAAGAACAGACAACGAGATCAAGAACTACTGGAACTCATGGATCAAAAAGAAGATTCGAAAACCTTCCCCACCATCATCGACTTCGACAACAACCAGCACCGCTGCACCTATTGCTCAAATGGGTTATAATGACTCAACCCAACAACTAGATTTTGTAAGTCAAGATTACATCGCATCAAAGCCTCACGCTCAAGATCAAACCATATTCTCTTCAACATACCCTATGTTCATGTTTGATACCACTGCAATCGATCAATTGGCTGCCGAAAACTACAATGCGCGTGTTGAGCTCTTCCAAGATATGGTCTCTGTGGGTTTTAGCAACTCTGACGTGCCGTGGAATCTGAACCAGCATCAAGTCCAGGCTCTTCCTCCTCCTCCTCCTCCTCCAGCCATGGACATAAACTATTTGCCGCCATTGATAGAGAACATGGACAGCATGTTGCCTATCATTGATGATGATCATCATCAAGTACTCCAACCTAACAATTGTAGTAACATGGAAATGGAGGAGGAGATCATCATCACCATCAGGATCAAATGGCAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

313

Amino Acids

35.88

Weight (kDa)

6.56

Isoelectric Point (pI)

53.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	46 - 93	6.5e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	49 - 107	1.1e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	99 - 143	2.4e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	102 - 150	7.6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AarI	CACCTGC	1 cut(s)	390
Acc36I	ACCTGC	3 cut(s)	65, 246, 390
AccB7I	CCANNNNNTGG	1 cut(s)	691
AccII	CGCG	1 cut(s)	670
AciI	CCGC	2 cut(s)	489, 803
AclWI	GGATC	2 cut(s)	437, 932
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	2 cut(s)	11, 864
AfiI	CCNNNNNNNGG	3 cut(s)	127, 343, 691
AgsI	TTSAA	2 cut(s)	236, 603
AjiI	CACGTC	1 cut(s)	721
AjnI	CCWGG	2 cut(s)	385, 750
AluBI	AGCT	4 cut(s)	169, 227, 252, 679
AluI	AGCT	4 cut(s)	169, 227, 252, 679
Alw21I	GWGCWC	1 cut(s)	681
Alw26I	GTCTC	2 cut(s)	153, 700
AlwI	GGATC	2 cut(s)	437, 932
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	4 cut(s)	114, 252, 491, 650
ApoI	RAATTY	1 cut(s)	14
AseI	ATTAAT	1 cut(s)	270
Asp700I	GAANNNNTTC	1 cut(s)	451
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	1 cut(s)	282
AsuHPI	GGTGA	5 cut(s)	95, 142, 175, 371, 907
AsuII	TTCGAA	1 cut(s)	445
AxyI	CCTNAGG	1 cut(s)	153
BanII	GRGCYC	2 cut(s)	367, 681
Bbv12I	GWGCWC	1 cut(s)	681
BbvI	GCAGC	4 cut(s)	101, 239, 478, 637
BccI	CCATC	3 cut(s)	354, 469, 926
BceAI	ACGGC	1 cut(s)	709
BciT130I	CCWGG	2 cut(s)	387, 752
BclI	TGATCA	1 cut(s)	850
BcoDI	GTCTC	2 cut(s)	153, 700
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	253
BfuAI	ACCTGC	3 cut(s)	65, 246, 390
BisI	GCNGC	5 cut(s)	115, 253, 492, 651, 803
BlsI	GCNGC	5 cut(s)	116, 254, 493, 652, 804
BmcAI	AGTACT	1 cut(s)	864
Bme1390I	CCNGG	2 cut(s)	387, 752
BmgBI	CACGTC	1 cut(s)	721
BmgT120I	GGNCC	1 cut(s)	282
BmrFI	CCNGG	2 cut(s)	387, 752
BmsI	GCATC	2 cut(s)	572, 751
BplI	GAGNNNNNCTC	2 cut(s)	292, 324
BpmI	CTGGAG	2 cut(s)	294, 762
Bpu14I	TTCGAA	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	564
Bsa29I	ATCGAT	1 cut(s)	639
BsaBI	GATNNNNATC	4 cut(s)	849, 852, 855, 911
BsaI	GGTCTC	2 cut(s)	153, 700
BsaJI	CCNNGG	3 cut(s)	190, 725, 783
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 343, 691
Bse1I	ACTGG	1 cut(s)	422
Bse21I	CCTNAGG	1 cut(s)	153
Bse8I	GATNNNNATC	4 cut(s)	849, 852, 855, 911
BseBI	CCWGG	2 cut(s)	387, 752
BseCI	ATCGAT	1 cut(s)	639
BseDI	CCNNGG	3 cut(s)	190, 725, 783
BseJI	GATNNNNATC	4 cut(s)	849, 852, 855, 911
BseLI	CCNNNNNNNGG	3 cut(s)	127, 343, 691
BseMII	CTCAG	2 cut(s)	144, 210
BseNI	ACTGG	1 cut(s)	422
BseRI	GAGGAG	7 cut(s)	753, 756, 759, 762, 765, 914, 917
BseXI	GCAGC	4 cut(s)	101, 239, 478, 637
BseYI	CCCAGC	1 cut(s)	227
BsgI	GTGCAG	1 cut(s)	477
Bsh1236I	CGCG	1 cut(s)	670
BshFI	GGCC	1 cut(s)	283
BshVI	ATCGAT	1 cut(s)	639
BsiHKAI	GWGCWC	1 cut(s)	681
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	127, 343, 691
BsmAI	GTCTC	2 cut(s)	153, 700
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	283
Bso31I	GGTCTC	2 cut(s)	153, 700
Bsp119I	TTCGAA	1 cut(s)	445
Bsp1286I	GDGCHC	2 cut(s)	367, 681
Bsp1407I	TGTACA	1 cut(s)	9
Bsp143I	GATC	7 cut(s)	405, 429, 583, 640, 850, 906, 924
Bsp19I	CCATGG	2 cut(s)	190, 783
BspACI	CCGC	2 cut(s)	489, 803
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	2 cut(s)	145, 211
BspDI	ATCGAT	1 cut(s)	639
BspFNI	CGCG	1 cut(s)	670
BspMAI	CTGCAG	1 cut(s)	257
BspMI	ACCTGC	3 cut(s)	65, 246, 390
BspPI	GGATC	2 cut(s)	437, 932
BspQI	GCTCTTC	3 cut(s)	64, 686, 762
BspT104I	TTCGAA	1 cut(s)	445
BspTNI	GGTCTC	2 cut(s)	153, 700
BsrGI	TGTACA	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	422
BssECI	CCNNGG	3 cut(s)	190, 725, 783
BssMI	GATC	7 cut(s)	405, 429, 583, 640, 850, 906, 924
BssT1I	CCWWGG	2 cut(s)	190, 783
Bst2UI	CCWGG	2 cut(s)	387, 752
Bst6I	CTCTTC	7 cut(s)	64, 128, 289, 312, 604, 686, 762
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstAUI	TGTACA	1 cut(s)	9
BstBI	TTCGAA	1 cut(s)	445
BstDEI	CTNAG	2 cut(s)	153, 219
BstDSI	CCRYGG	3 cut(s)	190, 725, 783
BstEII	GGTNACC	1 cut(s)	101
BstFNI	CGCG	1 cut(s)	670
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	7 cut(s)	408, 432, 586, 643, 853, 909, 927
BstMAI	GTCTC	2 cut(s)	153, 700
BstMBI	GATC	7 cut(s)	405, 429, 583, 640, 850, 906, 924
BstMWI	GCNNNNNNNGC	3 cut(s)	371, 500, 676
BstNI	CCWGG	2 cut(s)	387, 752
BstNSI	RCATGY	1 cut(s)	832
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	2 cut(s)	385, 750
BstSFI	CTRYAG	1 cut(s)	253
BstUI	CGCG	1 cut(s)	670
BstV1I	GCAGC	4 cut(s)	101, 239, 478, 637
BstXI	CCANNNNNNTGG	1 cut(s)	197
Bsu15I	ATCGAT	1 cut(s)	639
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	283
BsuTUI	ATCGAT	1 cut(s)	639
BtgI	CCRYGG	3 cut(s)	190, 725, 783
BtgZI	GCGATG	1 cut(s)	544
BtrI	CACGTC	1 cut(s)	721
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	1 cut(s)	630
BveI	ACCTGC	3 cut(s)	65, 246, 390
CfoI	GCGC	1 cut(s)	670
Cfr13I	GGNCC	1 cut(s)	282
ClaI	ATCGAT	1 cut(s)	639
Csp6I	GTAC	2 cut(s)	10, 863
CviAII	CATG	8 cut(s)	191, 341, 426, 619, 784, 820, 829, 889
CviQI	GTAC	2 cut(s)	10, 863
DdeI	CTNAG	2 cut(s)	153, 219
DpnI	GATC	7 cut(s)	407, 431, 585, 642, 852, 908, 926
DpnII	GATC	7 cut(s)	405, 429, 583, 640, 850, 906, 924
Eam1104I	CTCTTC	7 cut(s)	64, 128, 289, 312, 604, 686, 762
EarI	CTCTTC	7 cut(s)	64, 128, 289, 312, 604, 686, 762
Ecl136II	GAGCTC	1 cut(s)	679
Eco130I	CCWWGG	2 cut(s)	190, 783
Eco24I	GRGCYC	2 cut(s)	367, 681
Eco31I	GGTCTC	2 cut(s)	153, 700
Eco53kI	GAGCTC	1 cut(s)	679
Eco81I	CCTNAGG	1 cut(s)	153
Eco91I	GGTNACC	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	679
EcoO65I	GGTNACC	1 cut(s)	101
EcoRII	CCWGG	2 cut(s)	385, 750
EcoT14I	CCWWGG	2 cut(s)	190, 783
EcoT38I	GRGCYC	2 cut(s)	367, 681
ErhI	CCWWGG	2 cut(s)	190, 783
FaeI	CATG	8 cut(s)	194, 344, 429, 622, 787, 823, 832, 892
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	8 cut(s)	190, 340, 425, 618, 783, 819, 828, 888
FbaI	TGATCA	1 cut(s)	850
Fnu4HI	GCNGC	5 cut(s)	115, 253, 492, 651, 803
FriOI	GRGCYC	2 cut(s)	367, 681
Fsp4HI	GCNGC	5 cut(s)	115, 253, 492, 651, 803
FspBI	CTAG	1 cut(s)	536
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	5 cut(s)	115, 253, 492, 651, 803
GsaI	CCCAGC	1 cut(s)	231
GsuI	CTGGAG	2 cut(s)	294, 762
HaeIII	GGCC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	670
Hin1II	CATG	8 cut(s)	194, 344, 429, 622, 787, 823, 832, 892
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HinfI	GANTC	3 cut(s)	442, 521, 730
HphI	GGTGA	5 cut(s)	95, 142, 175, 371, 907
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188I	TCNGA	4 cut(s)	22, 176, 718, 735
Hpy188III	TCNNGA	6 cut(s)	152, 311, 409, 551, 581, 922
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	5 cut(s)	34, 56, 121, 347, 462
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	4 cut(s)	117, 255, 494, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	371, 500, 676
HpyF3I	CTNAG	2 cut(s)	153, 219
HpySE526I	ACGT	1 cut(s)	720
Hsp92II	CATG	8 cut(s)	194, 344, 429, 622, 787, 823, 832, 892
HspAI	GCGC	1 cut(s)	668
Ksp22I	TGATCA	1 cut(s)	850
Kzo9I	GATC	7 cut(s)	405, 429, 583, 640, 850, 906, 924
LguI	GCTCTTC	3 cut(s)	64, 686, 762
LmnI	GCTCC	1 cut(s)	207
Lsp1109I	GCAGC	4 cut(s)	101, 239, 478, 637
LweI	GCATC	2 cut(s)	572, 751
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	3 cut(s)	101, 377, 884
MalI	GATC	7 cut(s)	407, 431, 585, 642, 852, 908, 926
MboI	GATC	7 cut(s)	405, 429, 583, 640, 850, 906, 924
MfeI	CAATTG	2 cut(s)	644, 877
MhlI	GDGCHC	2 cut(s)	367, 681
MluCI	AATT	7 cut(s)	14, 24, 81, 271, 323, 644, 877
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	2 cut(s)	185, 892
MroXI	GAANNNNTTC	1 cut(s)	451
MseI	TTAA	2 cut(s)	95, 270
MslI	CAYNNNNRTG	2 cut(s)	195, 893
MspA1I	CMGCKG	1 cut(s)	491
MspR9I	CCNGG	2 cut(s)	387, 752
MunI	CAATTG	2 cut(s)	644, 877
MvaI	CCWGG	2 cut(s)	387, 752
MvnI	CGCG	1 cut(s)	670
MwoI	GCNNNNNNNGC	3 cut(s)	371, 500, 676
NcoI	CCATGG	2 cut(s)	190, 783
NdeII	GATC	7 cut(s)	405, 429, 583, 640, 850, 906, 924
NlaIII	CATG	8 cut(s)	194, 344, 429, 622, 787, 823, 832, 892
NmuCI	GTSAC	2 cut(s)	101, 377
NspI	RCATGY	1 cut(s)	832
NspV	TTCGAA	1 cut(s)	445
PaqCI	CACCTGC	1 cut(s)	390
PciSI	GCTCTTC	3 cut(s)	64, 686, 762
PdmI	GAANNNNTTC	1 cut(s)	451
PfeI	GAWTC	2 cut(s)	442, 730
PflMI	CCANNNNNTGG	1 cut(s)	691
PkrI	GCNGC	5 cut(s)	116, 254, 493, 652, 804
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
PshBI	ATTAAT	1 cut(s)	270
PsiI	TTATAA	1 cut(s)	516
Psp124BI	GAGCTC	1 cut(s)	681
Psp6I	CCWGG	2 cut(s)	385, 750
PspEI	GGTNACC	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	227
PspGI	CCWGG	2 cut(s)	385, 750
PspPI	GGNCC	1 cut(s)	282
PstI	CTGCAG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	11, 864
RsaNI	GTAC	2 cut(s)	10, 863
RseI	CAYNNNNRTG	2 cut(s)	195, 893
SacI	GAGCTC	1 cut(s)	681
SapI	GCTCTTC	3 cut(s)	64, 686, 762
SaqAI	TTAA	2 cut(s)	95, 270
SatI	GCNGC	5 cut(s)	115, 253, 492, 651, 803
Sau3AI	GATC	7 cut(s)	405, 429, 583, 640, 850, 906, 924
Sau96I	GGNCC	1 cut(s)	282
ScaI	AGTACT	1 cut(s)	864
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	387, 752
SduI	GDGCHC	2 cut(s)	367, 681
SfaNI	GCATC	2 cut(s)	572, 751
SfcI	CTRYAG	1 cut(s)	253
SfuI	TTCGAA	1 cut(s)	445
SmiMI	CAYNNNNRTG	2 cut(s)	195, 893
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
Sse9I	AATT	7 cut(s)	14, 24, 81, 271, 323, 644, 877
SsiI	CCGC	2 cut(s)	489, 803
SspMI	CTAG	1 cut(s)	536
SstI	GAGCTC	1 cut(s)	681
StyD4I	CCNGG	2 cut(s)	385, 750
StyI	CCWWGG	2 cut(s)	190, 783
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	4 cut(s)	445, 467, 473, 639
TasI	AATT	7 cut(s)	14, 24, 81, 271, 323, 644, 877
TatI	WGTACW	2 cut(s)	9, 862
TauI	GCSGC	1 cut(s)	805
TfiI	GAWTC	2 cut(s)	442, 730
Tru1I	TTAA	2 cut(s)	95, 270
Tru9I	TTAA	2 cut(s)	95, 270
TscAI	CASTG	1 cut(s)	637
TseFI	GTSAC	2 cut(s)	101, 377
TseI	GCWGC	4 cut(s)	114, 252, 491, 650
Tsp45I	GTSAC	2 cut(s)	101, 377
TspDTI	ATGAA	2 cut(s)	329, 607
TspRI	CASTG	1 cut(s)	637
Van91I	CCANNNNNTGG	1 cut(s)	691
VspI	ATTAAT	1 cut(s)	270
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	1 cut(s)	832
XmnI	GAANNNNTTC	1 cut(s)	451
XspI	CTAG	1 cut(s)	536
ZrmI	AGTACT	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.