Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

53436765 .. 53439484

Gene Structure 2720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00259030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGTCACCACTATTGCTGCAAAGAACGAAAGGTTAAGAGAGGCCTTTGGTCCCCTGAGGAAGATGAAAAGCTGTTGAGATACATCACTACCTATGGCCATGGCTGGCTACAAAGGTGTGGAAAGAGCTGTAGACTGAGATGGCTCAATTACTTGAGACCTGATATCAAAAGAGGAGTGTTTACACCAGATGAGGAGAAATTGATTATTAGACTGCATGGGGTTGTAGGGAACAGATGGGCGCATATCGCAAAGTGTCTTCCAGGAAGAACTGACAATGAAATAAAGAACTACTGGAACTCATGGATAAAGAAGAAGCTAGAGAAGCCTTCTTCACCAATGACCACATCTGCTGATCATCATCATCAATATTCCCAAATGGCATGTCTTAATCCAAACAACCAAGATCATATTGTGAATCAAACTTTCATTGCAAGGCCATCTGCATACCCCCTATATATGTTTGAGGCTGCTTCACTTGATGAGCGTACTACTCGTGCAAACAACATTAATATCAATGTACATGTAGATCAGCATTTCCCACTCAACGTGAACTCGAACAATCTTGGGGCATGGATTTTGGATCAGCATAATGTTCAACCCCTTCCTTCTACAGCACCATTTACAAACATGGATGCAAATCTGTTAATGCCATCCCTCATAGGAAGTACTACTACTGTTAATGCAAACATGGTTGAAGTGGAATCTTGTAGCAATATTGATGAAGAAGTTGTAAACCGTCGGTGCAGCTCGGCACCGGTGACTCGTGTAGCTGCTGGTGTTAGTGCAAGCGGCAGCGACATCTGCTATGGTGTGGCGGCGGGTATGGCTGCTGGAAGTCAGCTGGTGGTGTTCCAGTTCGGGGCAGGGGTGTTATGGGCTTGGTCCTTGGGCCTGGCTCAGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

302

Amino Acids

33.83

Weight (kDa)

8.54

Isoelectric Point (pI)

52.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 52	3.8e-07	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 66	2.1e-08	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	58 - 102	2.7e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	61 - 108	3.7e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	754
AccI	GTMKAC	1 cut(s)	133
AciI	CCGC	3 cut(s)	792, 818, 821
AclWI	GGATC	1 cut(s)	591
AcoI	YGGCCR	1 cut(s)	97
AfaI	GTAC	3 cut(s)	490, 522, 670
AfiI	CCNNNNNNNGG	2 cut(s)	862, 901
AflIII	ACRYGT	1 cut(s)	523
AgeI	ACCGGT	1 cut(s)	757
AgsI	TTSAA	2 cut(s)	599, 698
AjnI	CCWGG	2 cut(s)	262, 894
AluBI	AGCT	6 cut(s)	73, 129, 319, 750, 773, 844
AluI	AGCT	6 cut(s)	73, 129, 319, 750, 773, 844
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	1 cut(s)	591
AoxI	GGCC	4 cut(s)	43, 97, 437, 892
ApeKI	GCWGC	6 cut(s)	18, 470, 747, 773, 795, 830
ArsI	GACNNNNNNTTYG	2 cut(s)	370, 402
AseI	ATTAAT	1 cut(s)	510
AsiGI	ACCGGT	1 cut(s)	757
AspLEI	GCGC	1 cut(s)	244
AspS9I	GGNCC	3 cut(s)	51, 885, 892
AsuHPI	GGTGA	2 cut(s)	327, 772
AvaII	GGWCC	2 cut(s)	51, 885
AxyI	CCTNAGG	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	99
BanI	GGYRCC	1 cut(s)	754
BarI	GAAGNNNNNNTAC	2 cut(s)	658, 690
BauI	CACGAG	2 cut(s)	495, 765
BbsI	GAAGAC	1 cut(s)	251
BbvI	GCAGC	6 cut(s)	5, 457, 759, 760, 807, 817
BccI	CCATC	4 cut(s)	135, 231, 448, 661
BciT130I	CCWGG	2 cut(s)	264, 896
BclI	TGATCA	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	151
BfaI	CTAG	1 cut(s)	320
BfmI	CTRYAG	2 cut(s)	130, 612
BisI	GCNGC	8 cut(s)	19, 471, 748, 774, 793, 796, 819, 831
BlsI	GCNGC	8 cut(s)	20, 472, 749, 775, 794, 797, 820, 832
BmcAI	AGTACT	1 cut(s)	670
Bme1390I	CCNGG	2 cut(s)	264, 896
Bme18I	GGWCC	2 cut(s)	51, 885
BmgT120I	GGNCC	3 cut(s)	51, 885, 892
BmiI	GGNNCC	2 cut(s)	53, 756
BmrFI	CCNGG	2 cut(s)	264, 896
BmsI	GCATC	1 cut(s)	625
BpiI	GAAGAC	1 cut(s)	251
Bpu10I	CCTNAGC	1 cut(s)	900
BpuEI	CTTGAG	1 cut(s)	175
BsaBI	GATNNNNATC	2 cut(s)	360, 639
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	100, 888
BsaWI	WCCGGW	1 cut(s)	757
Bsc4I	CCNNNNNNNGG	2 cut(s)	862, 901
Bse118I	RCCGGY	1 cut(s)	757
Bse1I	ACTGG	2 cut(s)	299, 856
Bse21I	CCTNAGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	429
Bse8I	GATNNNNATC	2 cut(s)	360, 639
BseBI	CCWGG	2 cut(s)	264, 896
BseDI	CCNNGG	2 cut(s)	100, 888
BseGI	GGATG	2 cut(s)	640, 653
BseJI	GATNNNNATC	2 cut(s)	360, 639
BseLI	CCNNNNNNNGG	2 cut(s)	862, 901
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	48, 128
BseNI	ACTGG	2 cut(s)	299, 856
BseRI	GAGGAG	2 cut(s)	189, 209
BseXI	GCAGC	6 cut(s)	5, 457, 759, 760, 807, 817
BsgI	GTGCAG	1 cut(s)	766
BshFI	GGCC	4 cut(s)	45, 99, 439, 894
BshNI	GGYRCC	1 cut(s)	754
BshTI	ACCGGT	1 cut(s)	757
BsiSI	CCGG	1 cut(s)	758
BslFI	GGGAC	1 cut(s)	37
BslI	CCNNNNNNNGG	2 cut(s)	862, 901
BsmAI	GTCTC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	37
BsnI	GGCC	4 cut(s)	45, 99, 439, 894
Bso31I	GGTCTC	1 cut(s)	151
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	4 cut(s)	355, 406, 529, 583
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	3 cut(s)	792, 818, 821
BspANI	GGCC	4 cut(s)	45, 99, 439, 894
BspCNI	CTCAG	2 cut(s)	49, 129
BspLI	GGNNCC	2 cut(s)	53, 756
BspPI	GGATC	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	754
BspTNI	GGTCTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	757
BsrGI	TGTACA	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	299, 856
BssAI	RCCGGY	1 cut(s)	757
BssECI	CCNNGG	2 cut(s)	100, 888
BssMI	GATC	4 cut(s)	355, 406, 529, 583
BssSI	CACGAG	2 cut(s)	495, 765
BssT1I	CCWWGG	2 cut(s)	100, 888
Bst2BI	CACGAG	2 cut(s)	495, 765
Bst2UI	CCWGG	2 cut(s)	264, 896
Bst4CI	ACNGT	2 cut(s)	679, 740
BstAUI	TGTACA	1 cut(s)	520
BstC8I	GCNNGC	2 cut(s)	107, 790
BstDEI	CTNAG	3 cut(s)	57, 137, 900
BstDSI	CCRYGG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	5
BstENI	CCTNNNNNAGG	1 cut(s)	899
BstF5I	GGATG	2 cut(s)	640, 653
BstHHI	GCGC	1 cut(s)	244
BstKTI	GATC	4 cut(s)	358, 409, 532, 586
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	4 cut(s)	355, 406, 529, 583
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 325, 804, 827
BstNI	CCWGG	2 cut(s)	264, 896
BstNSI	RCATGY	2 cut(s)	387, 527
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	2 cut(s)	262, 894
BstSFI	CTRYAG	2 cut(s)	130, 612
BstV1I	GCAGC	6 cut(s)	5, 457, 759, 760, 807, 817
BstV2I	GAAGAC	1 cut(s)	251
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	4 cut(s)	45, 99, 439, 894
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	2 cut(s)	640, 653
Cac8I	GCNNGC	2 cut(s)	107, 790
CfoI	GCGC	1 cut(s)	244
Cfr10I	RCCGGY	1 cut(s)	757
Cfr13I	GGNCC	3 cut(s)	51, 885, 892
Csp6I	GTAC	3 cut(s)	489, 521, 669
CspAI	ACCGGT	1 cut(s)	757
CviAII	CATG	8 cut(s)	101, 218, 303, 384, 524, 573, 631, 691
CviQI	GTAC	3 cut(s)	489, 521, 669
DdeI	CTNAG	3 cut(s)	57, 137, 900
DpnI	GATC	4 cut(s)	357, 408, 531, 585
DpnII	GATC	4 cut(s)	355, 406, 529, 583
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	2 cut(s)	100, 888
Eco147I	AGGCCT	1 cut(s)	45
Eco31I	GGTCTC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	51, 885
Eco81I	CCTNAGG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	5
EcoNI	CCTNNNNNAGG	1 cut(s)	899
EcoO65I	GGTNACC	1 cut(s)	5
EcoRII	CCWGG	2 cut(s)	262, 894
EcoRV	GATATC	1 cut(s)	166
EcoT14I	CCWWGG	2 cut(s)	100, 888
ErhI	CCWWGG	2 cut(s)	100, 888
FaeI	CATG	8 cut(s)	104, 221, 306, 387, 527, 576, 634, 694
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	8 cut(s)	100, 217, 302, 383, 523, 572, 630, 690
FauI	CCCGC	1 cut(s)	814
FbaI	TGATCA	1 cut(s)	355
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	8 cut(s)	19, 471, 748, 774, 793, 796, 819, 831
FokI	GGATG	2 cut(s)	640, 647
Fsp4HI	GCNGC	8 cut(s)	19, 471, 748, 774, 793, 796, 819, 831
FspBI	CTAG	1 cut(s)	320
GlaI	GCGC	1 cut(s)	243
GluI	GCNGC	8 cut(s)	19, 471, 748, 774, 793, 796, 819, 831
HaeIII	GGCC	4 cut(s)	45, 99, 439, 894
HapII	CCGG	1 cut(s)	758
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	8 cut(s)	104, 221, 306, 387, 527, 576, 634, 694
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	3 cut(s)	418, 704, 763
HpaII	CCGG	1 cut(s)	758
HphI	GGTGA	2 cut(s)	327, 772
Hpy166II	GTNNAC	4 cut(s)	134, 183, 553, 736
Hpy8I	GTNNAC	4 cut(s)	134, 183, 553, 736
Hpy99I	CGWCG	1 cut(s)	744
HpyAV	CCTTC	3 cut(s)	339, 614, 618
HpyCH4III	ACNGT	2 cut(s)	679, 740
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	9 cut(s)	21, 217, 434, 446, 500, 638, 686, 747, 788
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 325, 804, 827
HpyF3I	CTNAG	3 cut(s)	57, 137, 900
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	8 cut(s)	104, 221, 306, 387, 527, 576, 634, 694
HspAI	GCGC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	4 cut(s)	355, 406, 529, 583
Lsp1109I	GCAGC	6 cut(s)	5, 457, 759, 760, 807, 817
LweI	GCATC	1 cut(s)	625
MaeI	CTAG	1 cut(s)	320
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	2 cut(s)	5, 760
MalI	GATC	4 cut(s)	357, 408, 531, 585
MboI	GATC	4 cut(s)	355, 406, 529, 583
MboII	GAAGA	6 cut(s)	74, 251, 279, 324, 325, 737
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	2 cut(s)	148, 200
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	757
MnlI	CCTC	6 cut(s)	35, 52, 167, 187, 460, 668
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	5 cut(s)	36, 390, 510, 647, 681
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	844
MspI	CCGG	1 cut(s)	758
MspR9I	CCNGG	2 cut(s)	264, 896
MvaI	CCWGG	2 cut(s)	264, 896
MwoI	GCNNNNNNNGC	4 cut(s)	248, 325, 804, 827
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	4 cut(s)	355, 406, 529, 583
NlaIII	CATG	8 cut(s)	104, 221, 306, 387, 527, 576, 634, 694
NlaIV	GGNNCC	2 cut(s)	53, 756
NmeAIII	GCCGAG	1 cut(s)	731
NmuCI	GTSAC	2 cut(s)	5, 760
NspI	RCATGY	2 cut(s)	387, 527
PceI	AGGCCT	1 cut(s)	45
PciI	ACATGT	1 cut(s)	523
PfeI	GAWTC	2 cut(s)	418, 704
PfoI	TCCNGGA	1 cut(s)	262
PinAI	ACCGGT	1 cut(s)	757
PkrI	GCNGC	8 cut(s)	20, 472, 749, 775, 794, 797, 820, 832
PleI	GAGTC	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	757
PscI	ACATGT	1 cut(s)	523
PshBI	ATTAAT	1 cut(s)	510
Psp6I	CCWGG	2 cut(s)	262, 894
PspEI	GGTNACC	1 cut(s)	5
PspGI	CCWGG	2 cut(s)	262, 894
PspN4I	GGNNCC	2 cut(s)	53, 756
PspPI	GGNCC	3 cut(s)	51, 885, 892
PvuII	CAGCTG	1 cut(s)	844
RsaI	GTAC	3 cut(s)	490, 522, 670
RsaNI	GTAC	3 cut(s)	489, 521, 669
SaqAI	TTAA	5 cut(s)	36, 390, 510, 647, 681
SatI	GCNGC	8 cut(s)	19, 471, 748, 774, 793, 796, 819, 831
Sau3AI	GATC	4 cut(s)	355, 406, 529, 583
Sau96I	GGNCC	3 cut(s)	51, 885, 892
ScaI	AGTACT	1 cut(s)	670
SchI	GAGTC	1 cut(s)	757
ScrFI	CCNGG	2 cut(s)	264, 896
SfaNI	GCATC	1 cut(s)	625
SfcI	CTRYAG	2 cut(s)	130, 612
SgrAI	CRCCGGYG	1 cut(s)	757
SinI	GGWCC	2 cut(s)	51, 885
SmlI	CTYRAG	1 cut(s)	154
SmoI	CTYRAG	1 cut(s)	154
Sse9I	AATT	2 cut(s)	148, 200
SseBI	AGGCCT	1 cut(s)	45
SsiI	CCGC	3 cut(s)	792, 818, 821
SspI	AATATT	2 cut(s)	371, 718
SspMI	CTAG	1 cut(s)	320
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	262, 894
StyI	CCWWGG	2 cut(s)	100, 888
TaaI	ACNGT	2 cut(s)	679, 740
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	1 cut(s)	557
TasI	AATT	2 cut(s)	148, 200
TatI	WGTACW	2 cut(s)	520, 668
TauI	GCSGC	2 cut(s)	795, 821
TfiI	GAWTC	2 cut(s)	418, 704
Tru1I	TTAA	5 cut(s)	36, 390, 510, 647, 681
Tru9I	TTAA	5 cut(s)	36, 390, 510, 647, 681
TseFI	GTSAC	2 cut(s)	5, 760
TseI	GCWGC	6 cut(s)	18, 470, 747, 773, 795, 830
Tsp45I	GTSAC	2 cut(s)	5, 760
TspDTI	ATGAA	4 cut(s)	81, 294, 418, 738
VpaK11BI	GGWCC	2 cut(s)	51, 885
VspI	ATTAAT	1 cut(s)	510
XagI	CCTNNNNNAGG	1 cut(s)	899
XceI	RCATGY	2 cut(s)	387, 527
XmiI	GTMKAC	1 cut(s)	133
XspI	CTAG	1 cut(s)	320
ZrmI	AGTACT	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.