Rw0G000350
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00008
OG0003850
Physical Location & Seq
Reverse (-)
35709 .. 36940
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000350.1

Sequence Viewer

Length: 960 bp
ATGGGTCACCACTACTGCTGCAAAGAACGGAAGGTTAAGAGGGGCCTTTGGTCCCCTGAGGAAGATGAAAAGCTGTTGAGATACATCACTACCTATGGCCATGGATGTTGGAGAAAAGTCCCTGAGCAAGCTGGGCTACAAAGGTGTGGTAAGAGCTGTAGACTGAGATGGCTCAATTACTTGAGACCTGATATCAAAAGAGGAGTGTTTACACCAGATGAGGAGAAATTGATTATTAGACTGCATGGGGTTGTAGGGAACAGATGGGCGCATATCGCAAAGTGTCTTCCAGGAAGAACTGACAATGAAATAAAGAACTACTGGAACTCATGGATAAAGAAGAAGCTAGAGAAGCCTTCTTCACCAATGACCACATCTGCTGATCATCATCATCAATATTCCCAAATGGCATGTCTTAATCCAAACAACCAAGATCATATTGTGAATCAAACTTTCATTGCAAGGCCGTCTGCATACCCCCTATATATGTTTGAGGCTGCTTCACTTGATCATGACGGTACTACTCGTGCAAACAACATTAATATCAATGTACATGTAGATCAGCATTTCCCACTCAACGTGAACTCGAACAATCTTGGGGCATGGATTTTGGATCGGCATAATGTTCAACCCCTTCCTTCTACAGCACCATTTACAAACATGGATGCAAATCTGTTAATGCCATCCCTCATAGGAAGTACTACTACTGTTAATGCAAACATGGTTGAAGTGGAATCTTGTAGCAATATTGATGAAGAAGGTGATATTTCAATGGAGTGCTTGCAGAGTCATCAGGATTTGATTGCAGTAGTTCATTCCCGGCAACAGCAACCGTGTTCGAACTTCCATTTTTGCTGGGATACTGTTGAAGAACAACATGGAGGGGATGAAATTGCTGGGCCACTTCATCGCAATACGGGAGCTAATATGATGTCTTCATCTCTCCCATCCTACCTCTGA

Protein Analysis

319

Amino Acids

36.35

Weight (kDa)

6.64

Isoelectric Point (pI)

61.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 3.1e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 111 2.9e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 70 - 117 4.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 160
AclWI GGATC 1 cut(s) 621
AcoI YGGCCR 1 cut(s) 97
AfaI GTAC 3 cut(s) 520, 552, 700
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 4 cut(s) 629, 728, 771, 869
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 5 cut(s) 73, 131, 156, 346, 923
AluI AGCT 5 cut(s) 73, 131, 156, 346, 923
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 621
AoxI GGCC 4 cut(s) 43, 97, 464, 899
ApeKI GCWGC 2 cut(s) 18, 497
ArsI GACNNNNNNTTYG 2 cut(s) 397, 429
AseI ATTAAT 1 cut(s) 540
AspLEI GCGC 1 cut(s) 271
AspS9I GGNCC 3 cut(s) 43, 51, 899
AsuC2I CCSGG 1 cut(s) 820
AsuHPI GGTGA 2 cut(s) 354, 773
AsuII TTCGAA 1 cut(s) 839
AvaII GGWCC 1 cut(s) 51
AxyI CCTNAGG 1 cut(s) 57
BalI TGGCCA 1 cut(s) 99
BarI GAAGNNNNNNTAC 2 cut(s) 688, 720
BauI CACGAG 1 cut(s) 525
BbsI GAAGAC 2 cut(s) 278, 927
BbvI GCAGC 2 cut(s) 5, 484
BccI CCATC 4 cut(s) 162, 258, 691, 955
BceAI ACGGC 1 cut(s) 451
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 853
BclI TGATCA 2 cut(s) 382, 508
BcnI CCSGG 1 cut(s) 820
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 1 cut(s) 347
BfmI CTRYAG 2 cut(s) 157, 642
BfuI GTATCC 1 cut(s) 853
BisI GCNGC 2 cut(s) 19, 498
BlsI GCNGC 2 cut(s) 20, 499
BmcAI AGTACT 1 cut(s) 700
Bme1390I CCNGG 2 cut(s) 291, 820
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 3 cut(s) 43, 51, 899
BmiI GGNNCC 2 cut(s) 44, 53
BmrFI CCNGG 2 cut(s) 291, 820
BmsI GCATC 1 cut(s) 655
BpiI GAAGAC 2 cut(s) 278, 927
Bpu10I CCTNAGC 1 cut(s) 123
Bpu14I TTCGAA 1 cut(s) 839
BpuEI CTTGAG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 820
BsaBI GATNNNNATC 2 cut(s) 387, 669
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 326
Bse21I CCTNAGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 456
Bse8I GATNNNNATC 2 cut(s) 387, 669
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 5 cut(s) 110, 670, 683, 892, 947
BseJI GATNNNNATC 2 cut(s) 387, 669
BseMI GCAATG 1 cut(s) 456
BseMII CTCAG 3 cut(s) 48, 114, 155
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 2 cut(s) 216, 236
BseXI GCAGC 2 cut(s) 5, 484
BseYI CCCAGC 3 cut(s) 131, 855, 896
BshFI GGCC 4 cut(s) 45, 99, 466, 901
BsiSI CCGG 1 cut(s) 820
BslFI GGGAC 2 cut(s) 37, 104
BsmAI GTCTC 1 cut(s) 178
BsmFI GGGAC 2 cut(s) 37, 104
BsnI GGCC 4 cut(s) 45, 99, 466, 901
Bso31I GGTCTC 1 cut(s) 178
Bsp119I TTCGAA 1 cut(s) 839
Bsp1407I TGTACA 1 cut(s) 550
Bsp143I GATC 5 cut(s) 382, 433, 508, 559, 613
Bsp19I CCATGG 1 cut(s) 100
BspANI GGCC 4 cut(s) 45, 99, 466, 901
BspCNI CTCAG 3 cut(s) 49, 115, 156
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 2 cut(s) 44, 53
BspPI GGATC 1 cut(s) 621
BspT104I TTCGAA 1 cut(s) 839
BspTNI GGTCTC 1 cut(s) 178
BsrDI GCAATG 1 cut(s) 456
BsrGI TGTACA 1 cut(s) 550
BsrI ACTGG 1 cut(s) 326
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 5 cut(s) 382, 433, 508, 559, 613
BssSI CACGAG 1 cut(s) 525
BssT1I CCWWGG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 525
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 4 cut(s) 518, 709, 834, 865
BstAUI TGTACA 1 cut(s) 550
BstBI TTCGAA 1 cut(s) 839
BstC8I GCNNGC 2 cut(s) 129, 782
BstDEI CTNAG 3 cut(s) 57, 123, 164
BstDSI CCRYGG 1 cut(s) 100
BstEII GGTNACC 1 cut(s) 5
BstF5I GGATG 5 cut(s) 110, 670, 683, 892, 947
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 5 cut(s) 385, 436, 511, 562, 616
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 5 cut(s) 382, 433, 508, 559, 613
BstMWI GCNNNNNNNGC 3 cut(s) 133, 275, 352
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 2 cut(s) 414, 557
BstPI GGTNACC 1 cut(s) 5
BstSCI CCNGG 2 cut(s) 289, 818
BstSFI CTRYAG 2 cut(s) 157, 642
BstV1I GCAGC 2 cut(s) 5, 484
BstV2I GAAGAC 2 cut(s) 278, 927
Bsu36I CCTNAGG 1 cut(s) 57
BsuI GTATCC 1 cut(s) 853
BsuRI GGCC 4 cut(s) 45, 99, 466, 901
BtgI CCRYGG 1 cut(s) 100
BtgZI GCGATG 1 cut(s) 893
BtsCI GGATG 5 cut(s) 110, 670, 683, 892, 947
Cac8I GCNNGC 2 cut(s) 129, 782
CciI TCATGA 1 cut(s) 511
CfoI GCGC 1 cut(s) 271
Cfr13I GGNCC 3 cut(s) 43, 51, 899
Csp6I GTAC 3 cut(s) 519, 551, 699
CviQI GTAC 3 cut(s) 519, 551, 699
DdeI CTNAG 3 cut(s) 57, 123, 164
DpnI GATC 5 cut(s) 384, 435, 510, 561, 615
DpnII GATC 5 cut(s) 382, 433, 508, 559, 613
EaeI YGGCCR 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 100
Eco31I GGTCTC 1 cut(s) 178
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 51
Eco81I CCTNAGG 1 cut(s) 57
Eco91I GGTNACC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 43
EcoO65I GGTNACC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 289
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 100
ErhI CCWWGG 1 cut(s) 100
FaqI GGGAC 2 cut(s) 37, 104
FbaI TGATCA 2 cut(s) 382, 508
FblI GTMKAC 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 19, 498
FokI GGATG 5 cut(s) 117, 670, 677, 899, 934
Fsp4HI GCNGC 2 cut(s) 19, 498
FspBI CTAG 1 cut(s) 347
GlaI GCGC 1 cut(s) 270
GluI GCNGC 2 cut(s) 19, 498
GsaI CCCAGC 3 cut(s) 135, 859, 900
HaeIII GGCC 4 cut(s) 45, 99, 466, 901
HapII CCGG 1 cut(s) 820
HhaI GCGC 1 cut(s) 271
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HinfI GANTC 3 cut(s) 445, 734, 787
HpaII CCGG 1 cut(s) 820
HphI GGTGA 2 cut(s) 354, 773
Hpy166II GTNNAC 3 cut(s) 161, 210, 583
Hpy188I TCNGA 1 cut(s) 959
Hpy188III TCNNGA 2 cut(s) 512, 794
Hpy8I GTNNAC 3 cut(s) 161, 210, 583
HpyAV CCTTC 5 cut(s) 25, 366, 644, 648, 752
HpyCH4III ACNGT 4 cut(s) 518, 709, 834, 865
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 9 cut(s) 21, 244, 461, 473, 530, 668, 716, 784, 806
HpyF10VI GCNNNNNNNGC 3 cut(s) 133, 275, 352
HpyF3I CTNAG 3 cut(s) 57, 123, 164
HpySE526I ACGT 1 cut(s) 579
HspAI GCGC 1 cut(s) 269
Ksp22I TGATCA 2 cut(s) 382, 508
Kzo9I GATC 5 cut(s) 382, 433, 508, 559, 613
LmnI GCTCC 1 cut(s) 920
Lsp1109I GCAGC 2 cut(s) 5, 484
LweI GCATC 1 cut(s) 655
MaeI CTAG 1 cut(s) 347
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 5
MalI GATC 5 cut(s) 384, 435, 510, 561, 615
MboI GATC 5 cut(s) 382, 433, 508, 559, 613
MboII GAAGA 8 cut(s) 74, 278, 306, 351, 352, 767, 881, 927
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 3 cut(s) 175, 227, 891
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 796
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 7 cut(s) 33, 52, 194, 214, 487, 698, 875
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 5 cut(s) 36, 417, 540, 677, 711
Msp20I TGGCCA 1 cut(s) 99
MspI CCGG 1 cut(s) 820
MspR9I CCNGG 2 cut(s) 291, 820
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 133, 275, 352
NciI CCSGG 1 cut(s) 820
NcoI CCATGG 1 cut(s) 100
NdeII GATC 5 cut(s) 382, 433, 508, 559, 613
NlaIV GGNNCC 2 cut(s) 44, 53
NmuCI GTSAC 1 cut(s) 5
NspI RCATGY 2 cut(s) 414, 557
NspV TTCGAA 1 cut(s) 839
PagI TCATGA 1 cut(s) 511
PciI ACATGT 1 cut(s) 553
PfeI GAWTC 2 cut(s) 445, 734
PfoI TCCNGGA 1 cut(s) 289
PkrI GCNGC 2 cut(s) 20, 499
PleI GAGTC 1 cut(s) 795
PpsI GAGTC 1 cut(s) 795
PscI ACATGT 1 cut(s) 553
PshBI ATTAAT 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 5
PspFI CCCAGC 3 cut(s) 131, 855, 896
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 44, 53
PspPI GGNCC 3 cut(s) 43, 51, 899
RsaI GTAC 3 cut(s) 520, 552, 700
RsaNI GTAC 3 cut(s) 519, 551, 699
SaqAI TTAA 5 cut(s) 36, 417, 540, 677, 711
SatI GCNGC 2 cut(s) 19, 498
Sau3AI GATC 5 cut(s) 382, 433, 508, 559, 613
Sau96I GGNCC 3 cut(s) 43, 51, 899
ScaI AGTACT 1 cut(s) 700
SchI GAGTC 1 cut(s) 796
ScrFI CCNGG 2 cut(s) 291, 820
SfaNI GCATC 1 cut(s) 655
SfcI CTRYAG 2 cut(s) 157, 642
SfuI TTCGAA 1 cut(s) 839
SinI GGWCC 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
Sse9I AATT 3 cut(s) 175, 227, 891
SspI AATATT 2 cut(s) 398, 748
SspMI CTAG 1 cut(s) 347
StyD4I CCNGG 2 cut(s) 289, 818
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 4 cut(s) 518, 709, 834, 865
TaiI ACGT 1 cut(s) 582
TaqI TCGA 2 cut(s) 587, 839
TasI AATT 3 cut(s) 175, 227, 891
TatI WGTACW 2 cut(s) 550, 698
TfiI GAWTC 2 cut(s) 445, 734
Tru1I TTAA 5 cut(s) 36, 417, 540, 677, 711
Tru9I TTAA 5 cut(s) 36, 417, 540, 677, 711
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 2 cut(s) 18, 497
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 8 cut(s) 81, 321, 445, 768, 803, 896, 903, 927
TspGWI ACGGA 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 51
VspI ATTAAT 1 cut(s) 540
XceI RCATGY 2 cut(s) 414, 557
XmiI GTMKAC 1 cut(s) 160
XspI CTAG 1 cut(s) 347
ZrmI AGTACT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.