Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Forward (+)

13415734 .. 13418126

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG159700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGTCACCATTCTTGCTGCAACCAACAGAAGGTGAAGAGAGGGCTTTGGTCTCCTGAGGAAGATGAGAAGCTCATCAGATACATCACCACCCATGGCTATGGTTGTTGGAGCGAAGTCCCTGAGAAAGCTGGGCTTCAAAGGTGTGGTAAGAGCTGCAGGTTGAGGTGGATTAATTATTTGAGGCCTGATATTAGAAGAGGGAGATTTACTCCAGAAGAAGAGAAATTGATTATTAGCCTTCATGGGGTTGTAGGCAACAGATGGGCTCATATAGCAAGTCACCTGCCTGGAAGAACAGACAACGAGATCAAGAACTACTGGAATTCATGGATCAAAAAGAAGATTCGAAAACCTTCCCCACCATCATCGACTTCGACAACAACCAGCACCGCTGCACCTATTGCTCAAATGGGTTATAATGACTCAACCCAACAACTAGATTTTGTAAGTCAAGATTACATCGCATCAAAGCCTCACGCTCAAGATCAAACCATATTCTCTTCAACATACCCTATGTTCATGTTTGATACCACTGCAATCGATCAATTGGCTGCCGAAAATTACAATGCGCGTGTTGAACTCTTCCAAGATATGGTCTCTGTGGGTTTTAGCAACTCTGACGTGCCGTGGAATCTGAACCAGCATCAAGTCCAGGCTCTTCCTCCTCCTCCTCCTCCTCCAGCCATGGACATAAACTATTTGCCGCCATTGATAGAGAACATGGACAGCATGTTGCCTATCATTGATGATCATCATCATCAAGTACTCCAACCTAACAATTGTAGTAACATGGATATGGAGGAGGGAGATCATCATCACCATCAGGATCAAATGGCAGAGTTGAATGAATGGGTTGTGTCCCAACAACAGTACTCGTCATCATGTCCTAACTTTCTTTTCTGGGACGAGATGAATGGTGTGGTGGATGATCATCAAGAGCCAGGATCAATAAATATCGTTGGAGAAGATCATCATAATATTATTGTACCTGCAACTTCATCAACTACGGGAGCCAATGCAGTACTGCTGTCTTCATTTCCTTCATCTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

351

Amino Acids

39.79

Weight (kDa)

5.49

Isoelectric Point (pI)

53.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	7.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	1.3e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 118	9e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	420, 1054
AarI	CACCTGC	1 cut(s)	294
Acc36I	ACCTGC	3 cut(s)	150, 294, 1000
AccB7I	CCANNNNNTGG	1 cut(s)	595
AccII	CGCG	1 cut(s)	574
AciI	CCGC	2 cut(s)	393, 707
AclWI	GGATC	3 cut(s)	341, 837, 955
AcsI	RAATTY	1 cut(s)	325
AfaI	GTAC	4 cut(s)	768, 875, 990, 1026
AfiI	CCNNNNNNNGG	3 cut(s)	31, 247, 595
AgsI	TTSAA	4 cut(s)	140, 507, 581, 847
AjiI	CACGTC	1 cut(s)	625
AjnI	CCWGG	3 cut(s)	289, 654, 943
AluBI	AGCT	3 cut(s)	73, 131, 156
AluI	AGCT	3 cut(s)	73, 131, 156
Alw26I	GTCTC	2 cut(s)	57, 604
AlwI	GGATC	3 cut(s)	341, 837, 955
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	4 cut(s)	18, 156, 395, 554
ApoI	RAATTY	1 cut(s)	325
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	574
AsuHPI	GGTGA	4 cut(s)	46, 79, 275, 812
AsuII	TTCGAA	1 cut(s)	349
AxyI	CCTNAGG	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	1026
BbvI	GCAGC	4 cut(s)	5, 143, 382, 541
BccI	CCATC	3 cut(s)	258, 373, 831
BceAI	ACGGC	1 cut(s)	613
BciT130I	CCWGG	3 cut(s)	291, 656, 945
BclI	TGATCA	2 cut(s)	751, 931
BcoDI	GTCTC	2 cut(s)	57, 604
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	157
BfuAI	ACCTGC	3 cut(s)	150, 294, 1000
BisI	GCNGC	5 cut(s)	19, 157, 396, 555, 707
BlsI	GCNGC	5 cut(s)	20, 158, 397, 556, 708
BmcAI	AGTACT	3 cut(s)	768, 875, 1026
Bme1390I	CCNGG	3 cut(s)	291, 656, 945
BmgBI	CACGTC	1 cut(s)	625
BmiI	GGNNCC	1 cut(s)	1015
BmrFI	CCNGG	3 cut(s)	291, 656, 945
BmsI	GCATC	2 cut(s)	476, 655
BpiI	GAAGAC	1 cut(s)	1026
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	2 cut(s)	198, 666
Bpu14I	TTCGAA	1 cut(s)	349
BpuEI	CTTGAG	1 cut(s)	468
Bsa29I	ATCGAT	1 cut(s)	543
BsaBI	GATNNNNATC	4 cut(s)	753, 756, 816, 933
BsaI	GGTCTC	2 cut(s)	57, 604
BsaJI	CCNNGG	3 cut(s)	94, 629, 687
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 247, 595
Bse1I	ACTGG	1 cut(s)	326
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	4 cut(s)	753, 756, 816, 933
BseBI	CCWGG	3 cut(s)	291, 656, 945
BseCI	ATCGAT	1 cut(s)	543
BseDI	CCNNGG	3 cut(s)	94, 629, 687
BseGI	GGATG	1 cut(s)	934
BseJI	GATNNNNATC	4 cut(s)	753, 756, 816, 933
BseLI	CCNNNNNNNGG	3 cut(s)	31, 247, 595
BseMII	CTCAG	2 cut(s)	48, 114
BseNI	ACTGG	1 cut(s)	326
BseRI	GAGGAG	6 cut(s)	657, 660, 663, 666, 669, 818
BseXI	GCAGC	4 cut(s)	5, 143, 382, 541
BseYI	CCCAGC	1 cut(s)	131
BsgI	GTGCAG	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	574
BshFI	GGCC	1 cut(s)	187
BshVI	ATCGAT	1 cut(s)	543
BslFI	GGGAC	3 cut(s)	104, 847, 920
BslI	CCNNNNNNNGG	3 cut(s)	31, 247, 595
BsmAI	GTCTC	2 cut(s)	57, 604
BsmFI	GGGAC	3 cut(s)	104, 847, 920
BsnI	GGCC	1 cut(s)	187
Bso31I	GGTCTC	2 cut(s)	57, 604
Bsp119I	TTCGAA	1 cut(s)	349
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp19I	CCATGG	2 cut(s)	94, 687
BspACI	CCGC	2 cut(s)	393, 707
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	49, 115
BspDI	ATCGAT	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	574
BspLI	GGNNCC	1 cut(s)	1015
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	3 cut(s)	150, 294, 1000
BspPI	GGATC	3 cut(s)	341, 837, 955
BspQI	GCTCTTC	1 cut(s)	666
BspT104I	TTCGAA	1 cut(s)	349
BspTNI	GGTCTC	2 cut(s)	57, 604
BsrI	ACTGG	1 cut(s)	326
BssECI	CCNNGG	3 cut(s)	94, 629, 687
BssT1I	CCWWGG	2 cut(s)	94, 687
Bst2UI	CCWGG	3 cut(s)	291, 656, 945
Bst4CI	ACNGT	1 cut(s)	873
Bst6I	CTCTTC	6 cut(s)	32, 193, 216, 508, 590, 666
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstBI	TTCGAA	1 cut(s)	349
BstDEI	CTNAG	2 cut(s)	57, 123
BstDSI	CCRYGG	3 cut(s)	94, 629, 687
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	934
BstFNI	CGCG	1 cut(s)	574
BstHHI	GCGC	1 cut(s)	574
BstMAI	GTCTC	2 cut(s)	57, 604
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 404
BstNI	CCWGG	3 cut(s)	291, 656, 945
BstNSI	RCATGY	1 cut(s)	736
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	3 cut(s)	289, 654, 943
BstSFI	CTRYAG	1 cut(s)	157
BstUI	CGCG	1 cut(s)	574
BstV1I	GCAGC	4 cut(s)	5, 143, 382, 541
BstV2I	GAAGAC	1 cut(s)	1026
BstXI	CCANNNNNNTGG	1 cut(s)	101
Bsu15I	ATCGAT	1 cut(s)	543
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	187
BsuTUI	ATCGAT	1 cut(s)	543
BtgI	CCRYGG	3 cut(s)	94, 629, 687
BtgZI	GCGATG	1 cut(s)	448
BtrI	CACGTC	1 cut(s)	625
BtsCI	GGATG	1 cut(s)	934
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
BveI	ACCTGC	3 cut(s)	150, 294, 1000
CfoI	GCGC	1 cut(s)	574
ClaI	ATCGAT	1 cut(s)	543
Csp6I	GTAC	4 cut(s)	767, 874, 989, 1025
CviAII	CATG	9 cut(s)	95, 245, 330, 523, 688, 724, 733, 793, 885
CviQI	GTAC	4 cut(s)	767, 874, 989, 1025
DdeI	CTNAG	2 cut(s)	57, 123
Eam1104I	CTCTTC	6 cut(s)	32, 193, 216, 508, 590, 666
EarI	CTCTTC	6 cut(s)	32, 193, 216, 508, 590, 666
Eco130I	CCWWGG	2 cut(s)	94, 687
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	271
Eco31I	GGTCTC	2 cut(s)	57, 604
Eco81I	CCTNAGG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	5
EcoO65I	GGTNACC	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	3 cut(s)	289, 654, 943
EcoT14I	CCWWGG	2 cut(s)	94, 687
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	2 cut(s)	94, 687
FaeI	CATG	9 cut(s)	98, 248, 333, 526, 691, 727, 736, 796, 888
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	3 cut(s)	104, 847, 920
FatI	CATG	9 cut(s)	94, 244, 329, 522, 687, 723, 732, 792, 884
FbaI	TGATCA	2 cut(s)	751, 931
Fnu4HI	GCNGC	5 cut(s)	19, 157, 396, 555, 707
FokI	GGATG	1 cut(s)	941
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	5 cut(s)	19, 157, 396, 555, 707
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	5 cut(s)	19, 157, 396, 555, 707
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	2 cut(s)	198, 666
HaeIII	GGCC	1 cut(s)	187
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	9 cut(s)	98, 248, 333, 526, 691, 727, 736, 796, 888
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HinfI	GANTC	3 cut(s)	346, 425, 634
HphI	GGTGA	4 cut(s)	46, 79, 275, 812
Hpy188I	TCNGA	3 cut(s)	80, 622, 639
Hpy188III	TCNNGA	7 cut(s)	56, 215, 313, 455, 485, 827, 938
HpyAV	CCTTC	4 cut(s)	25, 251, 366, 1053
HpyCH4III	ACNGT	1 cut(s)	873
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	6 cut(s)	21, 159, 398, 539, 995, 1022
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 404
HpyF3I	CTNAG	2 cut(s)	57, 123
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	9 cut(s)	98, 248, 333, 526, 691, 727, 736, 796, 888
HspAI	GCGC	1 cut(s)	572
Ksp22I	TGATCA	2 cut(s)	751, 931
LguI	GCTCTTC	1 cut(s)	666
LmnI	GCTCC	2 cut(s)	111, 1013
Lsp1109I	GCAGC	4 cut(s)	5, 143, 382, 541
LweI	GCATC	2 cut(s)	476, 655
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	3 cut(s)	5, 281, 788
MfeI	CAATTG	2 cut(s)	548, 781
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	6 cut(s)	175, 227, 325, 548, 562, 781
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	3 cut(s)	89, 796, 943
MroXI	GAANNNNTTC	1 cut(s)	355
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	99, 797
MspA1I	CMGCKG	1 cut(s)	395
MspR9I	CCNGG	3 cut(s)	291, 656, 945
MunI	CAATTG	2 cut(s)	548, 781
MvaI	CCWGG	3 cut(s)	291, 656, 945
MvnI	CGCG	1 cut(s)	574
MwoI	GCNNNNNNNGC	2 cut(s)	275, 404
NcoI	CCATGG	2 cut(s)	94, 687
NlaIII	CATG	9 cut(s)	98, 248, 333, 526, 691, 727, 736, 796, 888
NlaIV	GGNNCC	1 cut(s)	1015
NmuCI	GTSAC	2 cut(s)	5, 281
NspI	RCATGY	1 cut(s)	736
NspV	TTCGAA	1 cut(s)	349
PaqCI	CACCTGC	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	666
PdmI	GAANNNNTTC	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	346, 634
PflMI	CCANNNNNTGG	1 cut(s)	595
PkrI	GCNGC	5 cut(s)	20, 158, 397, 556, 708
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PshBI	ATTAAT	1 cut(s)	174
PsiI	TTATAA	2 cut(s)	420, 1054
Psp6I	CCWGG	3 cut(s)	289, 654, 943
PspEI	GGTNACC	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	3 cut(s)	289, 654, 943
PspN4I	GGNNCC	1 cut(s)	1015
PstI	CTGCAG	1 cut(s)	161
RsaI	GTAC	4 cut(s)	768, 875, 990, 1026
RsaNI	GTAC	4 cut(s)	767, 874, 989, 1025
RseI	CAYNNNNRTG	2 cut(s)	99, 797
SapI	GCTCTTC	1 cut(s)	666
SaqAI	TTAA	1 cut(s)	174
SatI	GCNGC	5 cut(s)	19, 157, 396, 555, 707
ScaI	AGTACT	3 cut(s)	768, 875, 1026
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	3 cut(s)	291, 656, 945
SduI	GDGCHC	1 cut(s)	271
SfaNI	GCATC	2 cut(s)	476, 655
SfcI	CTRYAG	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	349
SmiMI	CAYNNNNRTG	2 cut(s)	99, 797
SmlI	CTYRAG	1 cut(s)	483
SmoI	CTYRAG	1 cut(s)	483
Sse9I	AATT	6 cut(s)	175, 227, 325, 548, 562, 781
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	2 cut(s)	393, 707
SspI	AATATT	1 cut(s)	982
SspMI	CTAG	1 cut(s)	440
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	3 cut(s)	289, 654, 943
StyI	CCWWGG	2 cut(s)	94, 687
TaaI	ACNGT	1 cut(s)	873
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	4 cut(s)	349, 371, 377, 543
TasI	AATT	6 cut(s)	175, 227, 325, 548, 562, 781
TatI	WGTACW	3 cut(s)	766, 873, 1024
TauI	GCSGC	1 cut(s)	709
TfiI	GAWTC	2 cut(s)	346, 634
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	2 cut(s)	5, 281
TseI	GCWGC	4 cut(s)	18, 156, 395, 554
Tsp45I	GTSAC	2 cut(s)	5, 281
TspDTI	ATGAA	8 cut(s)	233, 318, 511, 864, 929, 990, 1026, 1035
TspRI	CASTG	1 cut(s)	541
Van91I	CCANNNNNTGG	1 cut(s)	595
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	1 cut(s)	736
XmnI	GAANNNNTTC	1 cut(s)	355
XspI	CTAG	1 cut(s)	440
ZrmI	AGTACT	3 cut(s)	768, 875, 1026

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.