Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

1872334 .. 1873985

Gene Structure 1652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g03110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGGTCACCACTATTGCTGCAAAGAACGAAAGGTTAAGAGGGGCCTTTGGTCCCCTGAGGAAGATGAAAAGCTGTTGAGTTACATCACTACCTATGGCCATGGCTGTTGGAGAAAAGTTCCTGAGCAGGCTGGGCTACAAAGATGTGGCAAGAGCTGCAGACTGAGATGGCTCAATTACTTGAGACCTGATATCAAAAGAGGAGGGTTTACACCGGATGAGGAGAACTTGATTATTAAACTTCATGGGGTTGTAGGGAACAGATGGGCGCATATCGCAAAGTGTCTACCAGGAAGAACAGACAATGAGATAAAAAATTACTGGAATTCGTGGATAAAAAAGAAGCTAGAGAAGCGTTGTTCACCAATAATCACATCTGATGATGATCATCATCAGCAATATTCCCAAATGGCGTGTCTCAATCCAAATAACCAAGATCAATTTGTGAATCAAACTTTCACTGCAAGGCCGTCTGCGTACTCCCCAATTATGTTTGAGGCCGCTTCACTTGATGAGAGTACTACTCATGCAAACAAGATTAACATCAATGTACAAGCAGGTCAGCATTTCCCACTCGACGTCAACTCGAACAAACTTTTGGCTTGGATTTTGGATCAGCATAATGTTCAAGCCCTTCCTTCTACAGCACCGTTTACAAACATGGATGCAAATCTGTTAATGCCATCCCTCATAGGAAGTAGTGGTACTACTGCATATAATACAAACATGGTTGAACTGGAATCTTGCAGCAACAATGATGAAGGAGGTCATGATATTTCAATGGAGTGCTTGCAGAGTCGTCAAGATTTGAATGCAGTTGTTCATTCACGCCAACAGCAACCGTGTTCGAACTTCCATTCTTGCTGGGATAGTGTTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

294

Amino Acids

33.36

Weight (kDa)

6.66

Isoelectric Point (pI)

60.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	7.6e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	1.2e-12	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	4.6e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 118	5.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	582
Acc36I	ACCTGC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	286
AciI	CCGC	1 cut(s)	501
AclWI	GGATC	1 cut(s)	621
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	325
AcyI	GRCGYC	1 cut(s)	579
AfaI	GTAC	4 cut(s)	479, 520, 552, 706
AgsI	TTSAA	5 cut(s)	629, 734, 780, 811, 878
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	581, 613
AluBI	AGCT	3 cut(s)	73, 156, 346
AluI	AGCT	3 cut(s)	73, 156, 346
Alw26I	GTCTC	2 cut(s)	178, 422
AlwI	GGATC	1 cut(s)	621
AoxI	GGCC	4 cut(s)	43, 97, 467, 498
ApeKI	GCWGC	3 cut(s)	18, 156, 747
ApoI	RAATTY	1 cut(s)	325
ArsI	GACNNNNNNTTYG	2 cut(s)	400, 432
AspLEI	GCGC	1 cut(s)	271
AspS9I	GGNCC	2 cut(s)	43, 51
AsuHPI	GGTGA	1 cut(s)	354
AsuII	TTCGAA	1 cut(s)	848
AvaII	GGWCC	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	57
BalI	TGGCCA	1 cut(s)	99
BarI	GAAGNNNNNNTAC	2 cut(s)	688, 720
BbvI	GCAGC	3 cut(s)	5, 143, 759
BccI	CCATC	3 cut(s)	162, 258, 691
BceAI	ACGGC	1 cut(s)	454
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	178, 422
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	2 cut(s)	157, 642
BfuAI	ACCTGC	1 cut(s)	548
BisI	GCNGC	4 cut(s)	19, 157, 501, 748
BlsI	GCNGC	4 cut(s)	20, 158, 502, 749
BmcAI	AGTACT	1 cut(s)	520
Bme1390I	CCNGG	1 cut(s)	291
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	2 cut(s)	43, 51
BmiI	GGNNCC	2 cut(s)	44, 53
BmrFI	CCNGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	655
BplI	GAGNNNNNCTC	2 cut(s)	508, 540
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	848
BpuEI	CTTGAG	1 cut(s)	202
BsaBI	GATNNNNATC	5 cut(s)	384, 387, 390, 542, 669
BsaHI	GRCGYC	1 cut(s)	579
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	1 cut(s)	100
BsaWI	WCCGGW	1 cut(s)	214
Bse1I	ACTGG	2 cut(s)	326, 741
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	5 cut(s)	384, 387, 390, 542, 669
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	100
BseGI	GGATG	3 cut(s)	223, 670, 683
BseJI	GATNNNNATC	5 cut(s)	384, 387, 390, 542, 669
BseMII	CTCAG	3 cut(s)	48, 114, 155
BseNI	ACTGG	2 cut(s)	326, 741
BseRI	GAGGAG	2 cut(s)	216, 236
BseXI	GCAGC	3 cut(s)	5, 143, 759
BseYI	CCCAGC	2 cut(s)	131, 864
BshFI	GGCC	4 cut(s)	45, 99, 469, 500
BsiSI	CCGG	1 cut(s)	215
BslFI	GGGAC	1 cut(s)	37
BsmAI	GTCTC	2 cut(s)	178, 422
BsmFI	GGGAC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	817
BsnI	GGCC	4 cut(s)	45, 99, 469, 500
Bso31I	GGTCTC	1 cut(s)	178
Bsp119I	TTCGAA	1 cut(s)	848
Bsp1407I	TGTACA	1 cut(s)	550
Bsp143I	GATC	3 cut(s)	385, 436, 613
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	501
BspANI	GGCC	4 cut(s)	45, 99, 469, 500
BspCNI	CTCAG	3 cut(s)	49, 115, 156
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	2 cut(s)	44, 53
BspMAI	CTGCAG	1 cut(s)	161
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	1 cut(s)	621
BspT104I	TTCGAA	1 cut(s)	848
BspTNI	GGTCTC	1 cut(s)	178
BsrGI	TGTACA	1 cut(s)	550
BsrI	ACTGG	2 cut(s)	326, 741
BssECI	CCNNGG	1 cut(s)	100
BssMI	GATC	3 cut(s)	385, 436, 613
BssNI	GRCGYC	1 cut(s)	579
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	2 cut(s)	651, 843
BstACI	GRCGYC	1 cut(s)	579
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstAUI	TGTACA	1 cut(s)	550
BstBI	TTCGAA	1 cut(s)	848
BstC8I	GCNNGC	2 cut(s)	129, 791
BstDEI	CTNAG	3 cut(s)	57, 123, 164
BstDSI	CCRYGG	1 cut(s)	100
BstEII	GGTNACC	1 cut(s)	5
BstF5I	GGATG	3 cut(s)	223, 670, 683
BstHHI	GCGC	1 cut(s)	271
BstKTI	GATC	3 cut(s)	388, 439, 616
BstMAI	GTCTC	2 cut(s)	178, 422
BstMBI	GATC	3 cut(s)	385, 436, 613
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 156, 275, 352
BstNI	CCWGG	1 cut(s)	291
BstPI	GGTNACC	1 cut(s)	5
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	2 cut(s)	157, 642
BstV1I	GCAGC	3 cut(s)	5, 143, 759
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	4 cut(s)	45, 99, 469, 500
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	3 cut(s)	223, 670, 683
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	1 cut(s)	459
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	2 cut(s)	129, 791
CciI	TCATGA	1 cut(s)	769
CfoI	GCGC	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	43, 51
Csp6I	GTAC	4 cut(s)	478, 519, 551, 705
CviAII	CATG	6 cut(s)	101, 245, 527, 661, 727, 770
CviQI	GTAC	4 cut(s)	478, 519, 551, 705
DdeI	CTNAG	3 cut(s)	57, 123, 164
DpnI	GATC	3 cut(s)	387, 438, 615
DpnII	GATC	3 cut(s)	385, 436, 613
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	51
Eco81I	CCTNAGG	1 cut(s)	57
Eco91I	GGTNACC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	5
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	289
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	100
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	6 cut(s)	104, 248, 530, 664, 730, 773
FaqI	GGGAC	1 cut(s)	37
FatI	CATG	6 cut(s)	100, 244, 526, 660, 726, 769
FbaI	TGATCA	1 cut(s)	385
FblI	GTMKAC	1 cut(s)	286
Fnu4HI	GCNGC	4 cut(s)	19, 157, 501, 748
FokI	GGATG	3 cut(s)	230, 670, 677
Fsp4HI	GCNGC	4 cut(s)	19, 157, 501, 748
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	270
GluI	GCNGC	4 cut(s)	19, 157, 501, 748
GsaI	CCCAGC	2 cut(s)	135, 868
HaeIII	GGCC	4 cut(s)	45, 99, 469, 500
HapII	CCGG	1 cut(s)	215
HhaI	GCGC	1 cut(s)	271
Hin1I	GRCGYC	1 cut(s)	579
Hin1II	CATG	6 cut(s)	104, 248, 530, 664, 730, 773
Hin6I	GCGC	1 cut(s)	269
HinP1I	GCGC	1 cut(s)	269
HincII	GTYRAC	1 cut(s)	583
HindII	GTYRAC	1 cut(s)	583
HinfI	GANTC	3 cut(s)	448, 740, 796
HpaII	CCGG	1 cut(s)	215
HphI	GGTGA	1 cut(s)	354
Hpy166II	GTNNAC	5 cut(s)	210, 287, 362, 583, 654
Hpy188I	TCNGA	1 cut(s)	379
Hpy188III	TCNNGA	3 cut(s)	122, 770, 803
Hpy8I	GTNNAC	5 cut(s)	210, 287, 362, 583, 654
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	3 cut(s)	644, 648, 755
HpyCH4III	ACNGT	2 cut(s)	651, 843
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	9 cut(s)	21, 159, 464, 530, 668, 713, 747, 793, 815
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 156, 275, 352
HpyF3I	CTNAG	3 cut(s)	57, 123, 164
HpySE526I	ACGT	1 cut(s)	579
Hsp92I	GRCGYC	1 cut(s)	579
Hsp92II	CATG	6 cut(s)	104, 248, 530, 664, 730, 773
HspAI	GCGC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	385, 436, 613
Lsp1109I	GCAGC	3 cut(s)	5, 143, 759
LweI	GCATC	1 cut(s)	655
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	2 cut(s)	5, 80
MalI	GATC	3 cut(s)	387, 438, 615
MboI	GATC	3 cut(s)	385, 436, 613
MboII	GAAGA	2 cut(s)	74, 306
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	5 cut(s)	175, 316, 325, 440, 486
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	805
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	8 cut(s)	33, 52, 194, 197, 214, 490, 698, 758
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	4 cut(s)	36, 237, 540, 677
Msp20I	TGGCCA	1 cut(s)	99
MspI	CCGG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	817
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	4 cut(s)	133, 156, 275, 352
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	3 cut(s)	385, 436, 613
NlaIII	CATG	6 cut(s)	104, 248, 530, 664, 730, 773
NlaIV	GGNNCC	2 cut(s)	44, 53
NmuCI	GTSAC	1 cut(s)	5
NspV	TTCGAA	1 cut(s)	848
PagI	TCATGA	1 cut(s)	769
PctI	GAATGC	1 cut(s)	817
PfeI	GAWTC	2 cut(s)	448, 740
PkrI	GCNGC	4 cut(s)	20, 158, 502, 749
PleI	GAGTC	1 cut(s)	804
PpsI	GAGTC	1 cut(s)	804
Psp6I	CCWGG	1 cut(s)	289
PspEI	GGTNACC	1 cut(s)	5
PspFI	CCCAGC	2 cut(s)	131, 864
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	2 cut(s)	44, 53
PspPI	GGNCC	2 cut(s)	43, 51
PstI	CTGCAG	1 cut(s)	161
RsaI	GTAC	4 cut(s)	479, 520, 552, 706
RsaNI	GTAC	4 cut(s)	478, 519, 551, 705
SaqAI	TTAA	4 cut(s)	36, 237, 540, 677
SatI	GCNGC	4 cut(s)	19, 157, 501, 748
Sau3AI	GATC	3 cut(s)	385, 436, 613
Sau96I	GGNCC	2 cut(s)	43, 51
ScaI	AGTACT	1 cut(s)	520
SchI	GAGTC	1 cut(s)	805
ScrFI	CCNGG	1 cut(s)	291
SetI	ASST	9 cut(s)	36, 75, 95, 158, 190, 348, 562, 582, 769
SfaNI	GCATC	1 cut(s)	655
SfcI	CTRYAG	2 cut(s)	157, 642
SfuI	TTCGAA	1 cut(s)	848
SinI	GGWCC	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	5 cut(s)	175, 316, 325, 440, 486
SsiI	CCGC	1 cut(s)	501
SspI	AATATT	1 cut(s)	401
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	651, 843
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	3 cut(s)	576, 587, 848
TasI	AATT	5 cut(s)	175, 316, 325, 440, 486
TatI	WGTACW	2 cut(s)	518, 550
TauI	GCSGC	1 cut(s)	503
TfiI	GAWTC	2 cut(s)	448, 740
Tru1I	TTAA	4 cut(s)	36, 237, 540, 677
Tru9I	TTAA	4 cut(s)	36, 237, 540, 677
TscAI	CASTG	1 cut(s)	466
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	3 cut(s)	18, 156, 747
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	4 cut(s)	81, 233, 774, 812
TspRI	CASTG	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	51
XapI	RAATTY	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	286
XspI	CTAG	1 cut(s)	347
ZraI	GACGTC	1 cut(s)	580
ZrmI	AGTACT	1 cut(s)	520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.