Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Forward (+)

61033964 .. 61034314

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG391700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGCAGGCAACCTTGTTGTGACAAGCTTGGCGTCAAGAAAGGTCCATGGACAGCCGAGGAAGACAAGAAACTAGTGAACTTCATCCTCACTCATGGCCAATGCTGCTGGCGAGCCGTCCCCAAGCTCGCGGGTCTGCGCCGCTGCGGCAAGAGCTGCCGCCTCCGCTGGACTAACTATCTCCGGCCGGACTTGAAGCGAGGGCTACTCAATGAAGCTGAGGAGCAGCTTGTTATTGACCTCCATGCTAGTCTTGGCAATAGGTTCTCTCTCCTTTTGCTCACTTCATTTCTTGTCATTATGTACTTTAACTATAGCCTAGCTAGCTACCTTAATTTCTTAGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

116

Amino Acids

13.32

Weight (kDa)

9.44

Isoelectric Point (pI)

36.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3.9e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	4.9e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	131
AciI	CCGC	5 cut(s)	131, 142, 147, 160, 166
AcoI	YGGCCR	2 cut(s)	97, 185
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	196
AhlI	ACTAGT	1 cut(s)	73
AluBI	AGCT	8 cut(s)	28, 127, 156, 218, 229, 323, 327, 344
AluI	AGCT	8 cut(s)	28, 127, 156, 218, 229, 323, 327, 344
AoxI	GGCC	2 cut(s)	97, 185
ApeKI	GCWGC	4 cut(s)	105, 144, 156, 226
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	44
AsuNHI	GCTAGC	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	4 cut(s)	92, 131, 143, 238
BceAI	ACGGC	1 cut(s)	101
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	4 cut(s)	74, 249, 320, 324
BfmI	CTRYAG	1 cut(s)	313
BglI	GCCNNNNNGGC	1 cut(s)	147
BisI	GCNGC	7 cut(s)	106, 142, 145, 148, 157, 160, 227
BlsI	GCNGC	7 cut(s)	107, 143, 146, 149, 158, 161, 228
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmtI	GCTAGC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	192, 224
Bpu10I	CCTNAGC	1 cut(s)	219
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	47, 57
BseDI	CCNNGG	2 cut(s)	47, 57
BseGI	GGATG	1 cut(s)	84
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	236
BseX3I	CGGCCG	1 cut(s)	185
BseXI	GCAGC	4 cut(s)	92, 131, 143, 238
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	99, 187
BsiEI	CGRYCG	1 cut(s)	188
BsiSI	CCGG	2 cut(s)	184, 188
BslFI	GGGAC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	99, 187
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	5 cut(s)	131, 142, 147, 160, 166
BspANI	GGCC	2 cut(s)	99, 187
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	131
BspOI	GCTAGC	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	47, 57
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	33
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	5 cut(s)	8, 110, 114, 129, 325
BstDEI	CTNAG	2 cut(s)	219, 340
BstDSI	CCRYGG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	84
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	141
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	6 cut(s)	105, 147, 153, 156, 165, 324
BstSFI	CTRYAG	1 cut(s)	313
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	4 cut(s)	92, 131, 143, 238
BstV2I	GAAGAC	1 cut(s)	69
BstZI	CGGCCG	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	99, 187
BtgI	CCRYGG	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	5 cut(s)	8, 110, 114, 129, 325
CfoI	GCGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	3 cut(s)	48, 95, 245
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	2 cut(s)	219, 340
EaeI	YGGCCR	2 cut(s)	97, 185
EagI	CGGCCG	1 cut(s)	185
EclXI	CGGCCG	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	44
Eco52I	CGGCCG	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	3 cut(s)	51, 98, 248
FaiI	YATR	5 cut(s)	49, 96, 246, 302, 315
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	3 cut(s)	47, 94, 244
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	7 cut(s)	106, 142, 145, 148, 157, 160, 227
FokI	GGATG	1 cut(s)	71
Fsp4HI	GCNGC	7 cut(s)	106, 142, 145, 148, 157, 160, 227
FspBI	CTAG	4 cut(s)	74, 249, 320, 324
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	7 cut(s)	106, 142, 145, 148, 157, 160, 227
HaeIII	GGCC	2 cut(s)	99, 187
HapII	CCGG	2 cut(s)	184, 188
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	51, 98, 248
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HindIII	AAGCTT	1 cut(s)	26
HpaII	CCGG	2 cut(s)	184, 188
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	6 cut(s)	105, 147, 153, 156, 165, 324
HpyF3I	CTNAG	2 cut(s)	219, 340
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	51, 98, 248
HspAI	GCGC	1 cut(s)	139
LmnI	GCTCC	1 cut(s)	223
LpnPI	CCDG	4 cut(s)	94, 154, 197, 201
Lsp1109I	GCAGC	4 cut(s)	92, 131, 143, 238
MaeI	CTAG	4 cut(s)	74, 249, 320, 324
MaeIII	GTNAC	1 cut(s)	20
MboII	GAAGA	1 cut(s)	74
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	2 cut(s)	334, 346
MluNI	TGGCCA	1 cut(s)	99
MnlI	CCTC	6 cut(s)	52, 98, 173, 194, 214, 251
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	2 cut(s)	309, 333
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	2 cut(s)	144, 168
MspI	CCGG	2 cut(s)	184, 188
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	6 cut(s)	105, 147, 153, 156, 165, 324
NcoI	CCATGG	1 cut(s)	47
NheI	GCTAGC	1 cut(s)	323
NlaIII	CATG	3 cut(s)	51, 98, 248
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	1 cut(s)	20
PkrI	GCNGC	7 cut(s)	107, 143, 146, 149, 158, 161, 228
PspPI	GGNCC	1 cut(s)	44
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	2 cut(s)	309, 333
SatI	GCNGC	7 cut(s)	106, 142, 145, 148, 157, 160, 227
Sau96I	GGNCC	1 cut(s)	44
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	44
SpeI	ACTAGT	1 cut(s)	73
Sse9I	AATT	2 cut(s)	334, 346
SsiI	CCGC	5 cut(s)	131, 142, 147, 160, 166
SspMI	CTAG	4 cut(s)	74, 249, 320, 324
StyI	CCWWGG	1 cut(s)	47
TasI	AATT	2 cut(s)	334, 346
TatI	WGTACW	1 cut(s)	303
TauI	GCSGC	3 cut(s)	144, 150, 162
Tru1I	TTAA	2 cut(s)	309, 333
Tru9I	TTAA	2 cut(s)	309, 333
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	4 cut(s)	105, 144, 156, 226
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	73, 228, 276
VpaK11BI	GGWCC	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XspI	CTAG	4 cut(s)	74, 249, 320, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.