Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0003850

Physical Location & Seq

Genomic Coordinates Reverse (-)

13787104 .. 13789041

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g08560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGGCACCATTCTTGCTGCAACCAACAGAAGGTTAAGAGAGGGCTTTGGTCCCCTGAGGAAGATGAGAAACTGATCAGATACATCACAACTCATGGCTATGGCTGTTGGAGTGAAGTCCCAGAAAAAGCTGGGCTTCAAAGGTGTGGTAAGAGCTGCCGCTTGAGATGGATTAATTATTTAAGGCCTGACATTAGAAGAGGGAGATTTACTCCAGAAGAAGAGAAATTGATTATTAGCCTCCATGGGGTTGTAGGCAACAGATGGGCTCATATAGCAAGCCATCTGCCGGGAAGAACAGACAATGAGATTAAGAACTACTGGAATTCATGGATCAAAAAGAAGATACGAAAGCCTTCCACACCTTCAAGTGCTACCACAATAAGTCCACCACCTAGTGTTGATCATCATCAGCATATAATTCCCCAACTGGGTAATTACAATAATCAACTAGATTTTGCACACCAAGATTTGAGTACGACCATAAAGCCTCAAGCTCAAGAAACCCTCTTTTCTTCAACATGCCCTATGTTCATGTTTGATACAAGTACTACTGCCAATATTGAAGCCGCTCCAGACAGTTACAATGCTCGTGGGGAGATTTTCCAAGACATGATTGTCACGACTGGTTTGAACTCATCTGAGCCGTGGAATTTGAATCAGCATCAAGTCCAGGCTTTCCCACCTCCGGTGACAATGTCATTTAATACTACAAGTAGCAGTACTAATAATATTACCATGAATACAAACTATTTGCCACCGTTGATCGAGAACATGGACAACATGGTACCGAACGTTGATCATCACCACCATCACCATCATCATCAATCTTGTAACAATATTGATGAGGAGGGAAATCATCGATCAGATAGCCTTGGAGTGCTTAATGCAAAGGCAGGAGTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

303

Amino Acids

34.31

Weight (kDa)

6.69

Isoelectric Point (pI)

57.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	6.2e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 76	6.9e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 111	2.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 118	6.4e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63910
fragaria_vesca	FvH4_5g03100 FvH4_5g03110
malus_domestica	MD06G1089700.v1.1 MD06G1089800.v1.1 MD06G1090000.v1.1 MD14G1110800.v1.1 MD14G1110900.v1.1
prunus_persica	Prupe.5G105700_v2.0.a1 Prupe.5G105800_v2.0.a1
pyrus_communis	pycom06g08560 pycom14g10550
rosa_chinensis	RchiOBHm_Chr7g0196701 RchiOBHm_Chr7g0196711
rosa_laevigata	RLG00000003995 RLG00000003996
rosa_multiflora	Rmu_co8407595.1_g000001 Rmu_sc0010880.1_g000002 Rmu_sc0018739.1_g000001
rosa_roxburghii	Rroxscaffold_3G00259020 Rroxscaffold_3G00259030
rosa_rugosa	Rorug07G0035800 Rorug07G0035900
rosa_samantha	Rh1DG391700 Rh7AG129800 Rh7AG159700 Rh7BG161700 Rh7BG161900 Rh7CG168100 Rh7CG168200 Rh7DG160900 Rh7DG161000
rosa_wichuraiana	Rw0G000330 Rw0G000350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
Acc65I	GGTACC	1 cut(s)	787
AccB1I	GGYRCC	2 cut(s)	6, 787
AccBSI	CCGCTC	1 cut(s)	572
AciI	CCGC	2 cut(s)	160, 570
AclI	AACGTT	1 cut(s)	795
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	2 cut(s)	325, 652
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	4 cut(s)	478, 550, 724, 789
AfiI	CCNNNNNNNGG	5 cut(s)	31, 247, 289, 431, 688
AgsI	TTSAA	7 cut(s)	140, 369, 519, 566, 634, 658, 905
AjnI	CCWGG	1 cut(s)	672
AluBI	AGCT	3 cut(s)	131, 156, 497
AluI	AGCT	3 cut(s)	131, 156, 497
AlwI	GGATC	1 cut(s)	341
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	18, 156
ApoI	RAATTY	2 cut(s)	325, 652
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	355
Asp718I	GGTACC	1 cut(s)	787
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	3 cut(s)	703, 797, 806
AvaII	GGWCC	1 cut(s)	51
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	2 cut(s)	6, 787
BanII	GRGCYC	1 cut(s)	271
BauI	CACGAG	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	5, 143
BccI	CCATC	5 cut(s)	162, 258, 291, 819, 825
BceAI	ACGGC	1 cut(s)	631
BciT130I	CCWGG	1 cut(s)	674
BclI	TGATCA	3 cut(s)	75, 403, 799
BcnI	CCSGG	1 cut(s)	291
BfaI	CTAG	2 cut(s)	396, 452
BisI	GCNGC	4 cut(s)	19, 157, 160, 570
BlsI	GCNGC	4 cut(s)	20, 158, 161, 571
BmcAI	AGTACT	2 cut(s)	550, 724
Bme1390I	CCNGG	2 cut(s)	291, 674
Bme18I	GGWCC	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	3 cut(s)	8, 53, 789
BmrFI	CCNGG	2 cut(s)	291, 674
BmrI	ACTGGG	1 cut(s)	440
BmsI	GCATC	1 cut(s)	673
BmuI	ACTGGG	1 cut(s)	440
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	2 cut(s)	198, 558
BpuEI	CTTGAG	3 cut(s)	184, 477, 483
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	862
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	244, 647, 874
BsaWI	WCCGGW	1 cut(s)	688
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 247, 289, 431, 688
Bse1I	ACTGG	3 cut(s)	326, 435, 631
Bse21I	CCTNAGG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	674
BseCI	ATCGAT	1 cut(s)	862
BseDI	CCNNGG	3 cut(s)	244, 647, 874
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	5 cut(s)	31, 247, 289, 431, 688
BseMII	CTCAG	2 cut(s)	48, 633
BseNI	ACTGG	3 cut(s)	326, 435, 631
BseRI	GAGGAG	1 cut(s)	863
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	2 cut(s)	5, 143
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	187
BshNI	GGYRCC	2 cut(s)	6, 787
BshVI	ATCGAT	1 cut(s)	862
BsiSI	CCGG	2 cut(s)	290, 689
BslFI	GGGAC	2 cut(s)	37, 104
BslI	CCNNNNNNNGG	5 cut(s)	31, 247, 289, 431, 688
BsmFI	GGGAC	2 cut(s)	37, 104
BsnI	GGCC	1 cut(s)	187
Bsp1286I	GDGCHC	2 cut(s)	9, 271
Bsp143I	GATC	6 cut(s)	75, 333, 403, 765, 799, 863
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	2 cut(s)	160, 570
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	2 cut(s)	49, 634
BspDI	ATCGAT	1 cut(s)	862
BspLI	GGNNCC	3 cut(s)	8, 53, 789
BspPI	GGATC	1 cut(s)	341
BspT107I	GGYRCC	2 cut(s)	6, 787
BsrBI	CCGCTC	1 cut(s)	572
BsrI	ACTGG	3 cut(s)	326, 435, 631
BssECI	CCNNGG	3 cut(s)	244, 647, 874
BssMI	GATC	6 cut(s)	75, 333, 403, 765, 799, 863
BssSI	CACGAG	1 cut(s)	591
BssT1I	CCWWGG	2 cut(s)	244, 874
Bst2BI	CACGAG	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	2 cut(s)	581, 762
Bst6I	CTCTTC	2 cut(s)	193, 216
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	2 cut(s)	57, 642
BstDSI	CCRYGG	2 cut(s)	244, 647
BstKTI	GATC	6 cut(s)	78, 336, 406, 768, 802, 866
BstMBI	GATC	6 cut(s)	75, 333, 403, 765, 799, 863
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	674
BstNSI	RCATGY	1 cut(s)	525
BstSCI	CCNGG	2 cut(s)	289, 672
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	2 cut(s)	5, 143
Bsu15I	ATCGAT	1 cut(s)	862
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	187
BsuTUI	ATCGAT	1 cut(s)	862
BtgI	CCRYGG	2 cut(s)	244, 647
Cac8I	GCNNGC	1 cut(s)	280
Cfr13I	GGNCC	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	862
Csp6I	GTAC	4 cut(s)	477, 549, 723, 788
CspCI	CAANNNNNGTGG	2 cut(s)	574, 609
CviAII	CATG	9 cut(s)	95, 245, 330, 522, 535, 613, 739, 775, 784
CviQI	GTAC	4 cut(s)	477, 549, 723, 788
DdeI	CTNAG	2 cut(s)	57, 642
DpnI	GATC	6 cut(s)	77, 335, 405, 767, 801, 865
DpnII	GATC	6 cut(s)	75, 333, 403, 765, 799, 863
DraIII	CACNNNGTG	1 cut(s)	398
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
Eam1104I	CTCTTC	2 cut(s)	193, 216
EarI	CTCTTC	2 cut(s)	193, 216
Eco130I	CCWWGG	2 cut(s)	244, 874
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	271
Eco47I	GGWCC	1 cut(s)	51
Eco81I	CCTNAGG	1 cut(s)	57
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	672
EcoT14I	CCWWGG	2 cut(s)	244, 874
EcoT38I	GRGCYC	1 cut(s)	271
ErhI	CCWWGG	2 cut(s)	244, 874
FaeI	CATG	9 cut(s)	98, 248, 333, 525, 538, 616, 742, 778, 787
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FaqI	GGGAC	2 cut(s)	37, 104
FatI	CATG	9 cut(s)	94, 244, 329, 521, 534, 612, 738, 774, 783
FbaI	TGATCA	3 cut(s)	75, 403, 799
Fnu4HI	GCNGC	4 cut(s)	19, 157, 160, 570
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	4 cut(s)	19, 157, 160, 570
FspBI	CTAG	2 cut(s)	396, 452
GluI	GCNGC	4 cut(s)	19, 157, 160, 570
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	2 cut(s)	198, 558
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	2 cut(s)	290, 689
Hin1II	CATG	9 cut(s)	98, 248, 333, 525, 538, 616, 742, 778, 787
HinfI	GANTC	1 cut(s)	658
HpaII	CCGG	2 cut(s)	290, 689
HphI	GGTGA	3 cut(s)	703, 797, 806
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	3 cut(s)	80, 643, 868
Hpy188III	TCNNGA	5 cut(s)	215, 500, 575, 622, 769
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	3 cut(s)	25, 366, 375
HpyCH4III	ACNGT	2 cut(s)	581, 762
HpyCH4IV	ACGT	1 cut(s)	795
HpyCH4V	TGCA	3 cut(s)	21, 461, 890
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	57, 642
HpySE526I	ACGT	1 cut(s)	795
Hsp92II	CATG	9 cut(s)	98, 248, 333, 525, 538, 616, 742, 778, 787
KpnI	GGTACC	1 cut(s)	791
Ksp22I	TGATCA	3 cut(s)	75, 403, 799
Kzo9I	GATC	6 cut(s)	75, 333, 403, 765, 799, 863
LmnI	GCTCC	1 cut(s)	577
Lsp1109I	GCAGC	2 cut(s)	5, 143
LweI	GCATC	1 cut(s)	673
MaeI	CTAG	2 cut(s)	396, 452
MaeII	ACGT	1 cut(s)	795
MaeIII	GTNAC	4 cut(s)	581, 619, 691, 833
MalI	GATC	6 cut(s)	77, 335, 405, 767, 801, 865
MbiI	CCGCTC	1 cut(s)	572
MboI	GATC	6 cut(s)	75, 333, 403, 765, 799, 863
MboII	GAAGA	7 cut(s)	74, 210, 230, 233, 306, 355, 507
MhlI	GDGCHC	2 cut(s)	9, 271
MluCI	AATT	6 cut(s)	175, 227, 325, 420, 436, 652
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	9 cut(s)	35, 52, 194, 251, 501, 518, 696, 841, 844
MroXI	GAANNNNTTC	1 cut(s)	355
MseI	TTAA	6 cut(s)	36, 174, 182, 312, 705, 885
MslI	CAYNNNNRTG	1 cut(s)	99
MspI	CCGG	2 cut(s)	290, 689
MspR9I	CCNGG	2 cut(s)	291, 674
MvaI	CCWGG	1 cut(s)	674
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	6 cut(s)	75, 333, 403, 765, 799, 863
NlaIII	CATG	9 cut(s)	98, 248, 333, 525, 538, 616, 742, 778, 787
NlaIV	GGNNCC	3 cut(s)	8, 53, 789
NmuCI	GTSAC	2 cut(s)	619, 691
NspI	RCATGY	1 cut(s)	525
PceI	AGGCCT	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	658
PflFI	GACNNNGTC	1 cut(s)	697
PkrI	GCNGC	4 cut(s)	20, 158, 161, 571
PshBI	ATTAAT	1 cut(s)	174
Psp1406I	AACGTT	1 cut(s)	795
Psp6I	CCWGG	1 cut(s)	672
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	3 cut(s)	8, 53, 789
PspPI	GGNCC	1 cut(s)	51
PsyI	GACNNNGTC	1 cut(s)	697
RsaI	GTAC	4 cut(s)	478, 550, 724, 789
RsaNI	GTAC	4 cut(s)	477, 549, 723, 788
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	6 cut(s)	36, 174, 182, 312, 705, 885
SatI	GCNGC	4 cut(s)	19, 157, 160, 570
Sau3AI	GATC	6 cut(s)	75, 333, 403, 765, 799, 863
Sau96I	GGNCC	1 cut(s)	51
ScaI	AGTACT	2 cut(s)	550, 724
ScrFI	CCNGG	2 cut(s)	291, 674
SduI	GDGCHC	2 cut(s)	9, 271
SetI	ASST	9 cut(s)	36, 133, 146, 158, 367, 397, 499, 688, 798
SfaNI	GCATC	1 cut(s)	673
SinI	GGWCC	1 cut(s)	51
SmiMI	CAYNNNNRTG	1 cut(s)	99
SmlI	CTYRAG	3 cut(s)	163, 492, 498
SmoI	CTYRAG	3 cut(s)	163, 492, 498
Sse9I	AATT	6 cut(s)	175, 227, 325, 420, 436, 652
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	2 cut(s)	160, 570
SspI	AATATT	3 cut(s)	562, 733, 841
SspMI	CTAG	2 cut(s)	396, 452
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	2 cut(s)	289, 672
StyI	CCWWGG	2 cut(s)	244, 874
TaaI	ACNGT	2 cut(s)	581, 762
TaiI	ACGT	1 cut(s)	798
TaqI	TCGA	2 cut(s)	768, 862
TasI	AATT	6 cut(s)	175, 227, 325, 420, 436, 652
TatI	WGTACW	2 cut(s)	548, 722
TauI	GCSGC	2 cut(s)	162, 572
TfiI	GAWTC	1 cut(s)	658
Tru1I	TTAA	6 cut(s)	36, 174, 182, 312, 705, 885
Tru9I	TTAA	6 cut(s)	36, 174, 182, 312, 705, 885
TseFI	GTSAC	2 cut(s)	619, 691
TseI	GCWGC	2 cut(s)	18, 156
Tsp45I	GTSAC	2 cut(s)	619, 691
TspDTI	ATGAA	3 cut(s)	318, 523, 755
Tth111I	GACNNNGTC	1 cut(s)	697
VpaK11BI	GGWCC	1 cut(s)	51
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	2 cut(s)	325, 652
XceI	RCATGY	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	355
XspI	CTAG	2 cut(s)	396, 452
ZrmI	AGTACT	2 cut(s)	550, 724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.