Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002450

Physical Location & Seq

Genomic Coordinates Reverse (-)

24811080 .. 24812661

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G66500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGCATCAAACGGATCTTTCTCTGCTCAGAGAAACGCAAACGCTAGAACAACGATGAAGAGAAGAAGCGACAATCGCGGTTACGGTGGCGGAATCGGAGGTTATCAAGAGGAGACGAACCGTTACGCGCCGCCGCAAAAACGTTTCAGATCACAAGCGCAACAGCAATTCCGATCTGGTCATAATCCTCTGTATCATCATCATGGTAGTAATAATAATAACGTGTCTAGGGTTTCTTCTCAATCATATAACAATTGCGGTGTTGATGTGATTGCTTCTAATTCAAGTTTTGCATTACGTAACAATGATTCTAACACCAACAATTATCAGAAACCCTTTGTTGCTGGTTATGGAAACCCTAATCCCCAAATTGTTCCTCTTCCATTACCTTATCGTAAGCTTGATGACAATCTCTCTTTAGATTCGTTACCTGATTGGGTTCCGAATTCAAGAACCCTAACTCCGAATTATCCTGTTAGGTCATCGAATTTTGTACCAAACACTCCTGTTTTTACGAATGTTCAAAATCCGATGAATCATTCGAACATGGTTTCAGTTGTGTCTCAATCTATGCATCAACCAATTGTTTTGAGCAAAGAATTGACTGATTTGCTTAGTCTTCTTAACAATGAGAAAGAGAAGAAAACTTTAGAAGCAAGTAATAGTGATTCTTTGCCTGTTGGATTAAGCTTTGATAATCCATCGTCACTTAATGTTCGACATGAATCTGTGATTAAGTCTCTGTATTCTGATATGCCGAGACAATGTTCATCGTGTGGGTTGAGATTCAAGTGTCAAGAAGAGCATAGTAAACACATGGATTGGCATGTAAGGAAGAACAGGTCGGTGAAAACCACTACAAGACTGGGTCAGCAACCGAAGAAATCGAGGGGATGGTTAGCAAGTGCATCTTTATGGCTTTGTGCAGCGACGGGAGGAGAGACGGTAGAAGTAGCATCTTTTGGAGGAGAAATGCAGAAGAAGAAAGGAAAGGACGAAGAACCAAAACAACTCATGGTGCCTGCGGATGAAGATCAGAAGAATTGCGCATTATGCGTAGAGCCGTTTGAAGAGTTCTTTAGCCATGAAGATGATGATTGGATGTATAAAGATGCAGTCTACTTAACCAAGAATGGTCGTATAGTTCATGTTAAGTGTATGCCTGAACCCCGACCTGCTAAGGATTTGAGAGAGCCTTCGAGGGTAATGTCTGTTACAGTTCCATCGGTTGCGAAAGCTATAGCCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000993 GO:0001098 GO:0001099 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005849 GO:0006139 GO:0006351 GO:0006353 GO:0006366 GO:0006369 GO:0006378 GO:0006379 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009909 GO:0009911 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0019899 GO:0031123 GO:0031124 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043631 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0046483 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0070013 GO:0070063 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

CTD_bind

Protein Analysis

416

Amino Acids

46.6

Weight (kDa)

9.08

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf_PCFS4	PF23228	336 - 388	7.2e-19	PCFS4 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66500 AT5G43620
fragaria_vesca	FvH4_1g20911
malus_domestica	MD02G1287400.v1.1
pyrus_communis	pycom02g24360
rosa_chinensis	RchiOBHm_Chr2g0114011
rosa_laevigata	RLG00000018074
rosa_multiflora	Rmu_sc0000431.1_g000006 Rmu_sc0000431.1_g000021 Rmu_sc0000431.1_g000030 Rmu_sc0000929.1_g000013 Rmu_sc0000929.1_g000028 Rmu_sc0000929.1_g000038 Rmu_sc0004283.1_g000005 Rmu_sc0004283.1_g000030 Rmu_sc0006252.1_g000024 Rmu_sc0007010.1_g000002 Rmu_sc0007415.1_g000029 Rmu_sc0007415.1_g000046 Rmu_sc0008397.1_g000005 Rmu_sc0010543.1_g000009
rosa_roxburghii	Rroxscaffold_2G00129140 Rroxscaffold_2G00130060
rosa_rugosa	Rorug02G0188100 Rorug02G0188300 Rorug02G0188500 Rorug02G0189100 Rorug02G0189200 Rorug02G0189800 Rorug02G0190000
rosa_samantha	Rh2CG247200 Rh2CG247400 Rh2CG248100 Rh2CG248200 Rh2CG248900 Rh2CG249300 Rh2CG249600 Rh2CG250300 Rh6DG014200
rosa_wichuraiana	Rw0G014640 Rw2G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1048
Acc36I	ACCTGC	1 cut(s)	1183
AccB1I	GGYRCC	1 cut(s)	1018
AccI	GTMKAC	1 cut(s)	1119
AccII	CGCG	2 cut(s)	78, 128
AciI	CCGC	6 cut(s)	78, 90, 131, 134, 258, 1025
AclI	AACGTT	1 cut(s)	142
AclWI	GGATC	1 cut(s)	22
AcsI	RAATTY	2 cut(s)	445, 487
AfaI	GTAC	1 cut(s)	495
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	5 cut(s)	285, 450, 524, 790, 1070
AloI	GAACNNNNNNTCC	2 cut(s)	445, 477
AluBI	AGCT	3 cut(s)	400, 690, 1238
AluI	AGCT	3 cut(s)	400, 690, 1238
Alw26I	GTCTC	5 cut(s)	107, 567, 744, 754, 935
AlwI	GGATC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	926
ApoI	RAATTY	2 cut(s)	445, 487
AspLEI	GCGC	3 cut(s)	130, 160, 1049
AsuHPI	GGTGA	1 cut(s)	859
AsuII	TTCGAA	1 cut(s)	542
BanI	GGYRCC	1 cut(s)	1018
BbsI	GAAGAC	1 cut(s)	611
BbvI	GCAGC	1 cut(s)	938
BccI	CCATC	3 cut(s)	709, 888, 1231
BceAI	ACGGC	1 cut(s)	1048
BcoDI	GTCTC	5 cut(s)	107, 567, 744, 754, 935
BfaI	CTAG	2 cut(s)	45, 228
BfmI	CTRYAG	1 cut(s)	1239
BfuAI	ACCTGC	1 cut(s)	1183
BisI	GCNGC	3 cut(s)	131, 134, 927
BlsI	GCNGC	3 cut(s)	132, 135, 928
BmiI	GGNNCC	2 cut(s)	441, 1020
BmrI	ACTGGG	1 cut(s)	875
BmsI	GCATC	5 cut(s)	14, 583, 917, 965, 1102
BmuI	ACTGGG	1 cut(s)	875
BpiI	GAAGAC	1 cut(s)	611
Bpu10I	CCTNAGC	1 cut(s)	1179
Bpu14I	TTCGAA	1 cut(s)	542
BsaAI	YACGTR	1 cut(s)	299
BsaBI	GATNNNNATC	2 cut(s)	408, 1032
BsaXI	ACNNNNNCTCC	4 cut(s)	445, 475, 930, 960
Bse1I	ACTGG	1 cut(s)	870
Bse8I	GATNNNNATC	2 cut(s)	408, 1032
BseGI	GGATG	3 cut(s)	899, 1033, 1107
BseJI	GATNNNNATC	2 cut(s)	408, 1032
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	870
BseRI	GAGGAG	3 cut(s)	125, 951, 981
BseXI	GCAGC	1 cut(s)	938
BsgI	GTGCAG	1 cut(s)	945
Bsh1236I	CGCG	2 cut(s)	78, 128
BshNI	GGYRCC	1 cut(s)	1018
BsmAI	GTCTC	5 cut(s)	107, 567, 744, 754, 935
BsmBI	CGTCTC	2 cut(s)	107, 935
Bsp119I	TTCGAA	1 cut(s)	542
Bsp143I	GATC	4 cut(s)	14, 149, 173, 1033
BspACI	CCGC	6 cut(s)	78, 90, 131, 134, 258, 1025
BspCNI	CTCAG	1 cut(s)	40
BspFNI	CGCG	2 cut(s)	78, 128
BspLI	GGNNCC	2 cut(s)	441, 1020
BspMI	ACCTGC	1 cut(s)	1183
BspPI	GGATC	1 cut(s)	22
BspQI	GCTCTTC	1 cut(s)	795
BspT104I	TTCGAA	1 cut(s)	542
BspT107I	GGYRCC	1 cut(s)	1018
BsrI	ACTGG	1 cut(s)	870
BssMI	GATC	4 cut(s)	14, 149, 173, 1033
Bst4CI	ACNGT	4 cut(s)	86, 122, 946, 1219
Bst6I	CTCTTC	4 cut(s)	53, 384, 795, 1065
BstBAI	YACGTR	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	1023, 1246
BstDEI	CTNAG	3 cut(s)	27, 614, 1179
BstF5I	GGATG	3 cut(s)	899, 1033, 1107
BstFNI	CGCG	2 cut(s)	78, 128
BstHHI	GCGC	3 cut(s)	130, 160, 1049
BstKTI	GATC	4 cut(s)	17, 152, 176, 1036
BstMAI	GTCTC	5 cut(s)	107, 567, 744, 754, 935
BstMBI	GATC	4 cut(s)	14, 149, 173, 1033
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 1053
BstNSI	RCATGY	1 cut(s)	830
BstSFI	CTRYAG	1 cut(s)	1239
BstSNI	TACGTA	1 cut(s)	299
BstUI	CGCG	2 cut(s)	78, 128
BstV1I	GCAGC	1 cut(s)	938
BstV2I	GAAGAC	1 cut(s)	611
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BtsCI	GGATG	3 cut(s)	899, 1033, 1107
BveI	ACCTGC	1 cut(s)	1183
Cac8I	GCNNGC	2 cut(s)	1023, 1246
CfoI	GCGC	3 cut(s)	130, 160, 1049
Csp6I	GTAC	1 cut(s)	494
CviAII	CATG	8 cut(s)	203, 547, 722, 817, 827, 1015, 1085, 1148
CviJI	RGCY	8 cut(s)	400, 690, 919, 1063, 1083, 1195, 1238, 1244
CviKI_1	RGCY	8 cut(s)	400, 690, 919, 1063, 1083, 1195, 1238, 1244
CviQI	GTAC	1 cut(s)	494
DdeI	CTNAG	3 cut(s)	27, 614, 1179
DpnI	GATC	4 cut(s)	16, 151, 175, 1035
DpnII	GATC	4 cut(s)	14, 149, 173, 1033
Eam1104I	CTCTTC	4 cut(s)	53, 384, 795, 1065
EarI	CTCTTC	4 cut(s)	53, 384, 795, 1065
EciI	GGCGGA	1 cut(s)	105
Eco105I	TACGTA	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	576
Esp3I	CGTCTC	2 cut(s)	107, 935
FaeI	CATG	8 cut(s)	206, 550, 725, 820, 830, 1018, 1088, 1151
FalI	AAGNNNNNCTT	2 cut(s)	895, 927
FatI	CATG	8 cut(s)	202, 546, 721, 816, 826, 1014, 1084, 1147
FblI	GTMKAC	1 cut(s)	1119
Fnu4HI	GCNGC	3 cut(s)	131, 134, 927
FokI	GGATG	3 cut(s)	906, 1040, 1114
Fsp4HI	GCNGC	3 cut(s)	131, 134, 927
FspBI	CTAG	2 cut(s)	45, 228
FspI	TGCGCA	1 cut(s)	1048
GlaI	GCGC	3 cut(s)	129, 159, 1048
GluI	GCNGC	3 cut(s)	131, 134, 927
HhaI	GCGC	3 cut(s)	130, 160, 1049
Hin1II	CATG	8 cut(s)	206, 550, 725, 820, 830, 1018, 1088, 1151
Hin6I	GCGC	3 cut(s)	128, 158, 1047
HinP1I	GCGC	3 cut(s)	128, 158, 1047
HindIII	AAGCTT	2 cut(s)	398, 688
HinfI	GANTC	7 cut(s)	93, 308, 422, 535, 668, 725, 786
HphI	GGTGA	1 cut(s)	859
Hpy166II	GTNNAC	2 cut(s)	812, 1120
Hpy188III	TCNNGA	3 cut(s)	107, 450, 797
Hpy8I	GTNNAC	2 cut(s)	812, 1120
Hpy99I	CGWCG	1 cut(s)	934
HpyAV	CCTTC	1 cut(s)	1206
HpyCH4III	ACNGT	4 cut(s)	86, 122, 946, 1219
HpyCH4IV	ACGT	3 cut(s)	142, 222, 298
HpyCH4V	TGCA	6 cut(s)	293, 574, 908, 926, 976, 1115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 1053
HpyF3I	CTNAG	3 cut(s)	27, 614, 1179
HpySE526I	ACGT	3 cut(s)	142, 222, 298
Hsp92II	CATG	8 cut(s)	206, 550, 725, 820, 830, 1018, 1088, 1151
HspAI	GCGC	3 cut(s)	128, 158, 1047
Kzo9I	GATC	4 cut(s)	14, 149, 173, 1033
LguI	GCTCTTC	1 cut(s)	795
Lsp1109I	GCAGC	1 cut(s)	938
LweI	GCATC	5 cut(s)	14, 583, 917, 965, 1102
MaeI	CTAG	2 cut(s)	45, 228
MaeII	ACGT	3 cut(s)	142, 222, 298
MaeIII	GTNAC	6 cut(s)	80, 122, 299, 426, 705, 1213
MalI	GATC	4 cut(s)	16, 151, 175, 1035
MboI	GATC	4 cut(s)	14, 149, 173, 1033
MfeI	CAATTG	2 cut(s)	253, 582
MflI	RGATCY	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	661
MnlI	CCTC	8 cut(s)	92, 103, 198, 387, 882, 929, 959, 1194
Mph1103I	ATGCAT	1 cut(s)	576
MseI	TTAA	6 cut(s)	624, 686, 711, 735, 1124, 1152
MslI	CAYNNNNRTG	3 cut(s)	201, 913, 1089
MunI	CAATTG	2 cut(s)	253, 582
MvnI	CGCG	2 cut(s)	78, 128
MwoI	GCNNNNNNNGC	2 cut(s)	75, 1053
NdeII	GATC	4 cut(s)	14, 149, 173, 1033
NlaIII	CATG	8 cut(s)	206, 550, 725, 820, 830, 1018, 1088, 1151
NlaIV	GGNNCC	2 cut(s)	441, 1020
NmeAIII	GCCGAG	1 cut(s)	783
NmuCI	GTSAC	1 cut(s)	705
NsbI	TGCGCA	1 cut(s)	1048
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	1 cut(s)	830
NspV	TTCGAA	1 cut(s)	542
PciSI	GCTCTTC	1 cut(s)	795
PfeI	GAWTC	7 cut(s)	93, 308, 422, 535, 668, 725, 786
PflFI	GACNNNGTC	1 cut(s)	867
PkrI	GCNGC	3 cut(s)	132, 135, 928
Ppu21I	YACGTR	1 cut(s)	299
Psp1406I	AACGTT	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	441, 1020
PsuI	RGATCY	1 cut(s)	14
PsyI	GACNNNGTC	1 cut(s)	867
RsaI	GTAC	1 cut(s)	495
RsaNI	GTAC	1 cut(s)	494
RseI	CAYNNNNRTG	3 cut(s)	201, 913, 1089
SapI	GCTCTTC	1 cut(s)	795
SaqAI	TTAA	6 cut(s)	624, 686, 711, 735, 1124, 1152
SatI	GCNGC	3 cut(s)	131, 134, 927
Sau3AI	GATC	4 cut(s)	14, 149, 173, 1033
SfaNI	GCATC	5 cut(s)	14, 583, 917, 965, 1102
SfcI	CTRYAG	1 cut(s)	1239
SfuI	TTCGAA	1 cut(s)	542
SmiMI	CAYNNNNRTG	3 cut(s)	201, 913, 1089
SnaBI	TACGTA	1 cut(s)	299
SsiI	CCGC	6 cut(s)	78, 90, 131, 134, 258, 1025
SspMI	CTAG	2 cut(s)	45, 228
TaaI	ACNGT	4 cut(s)	86, 122, 946, 1219
TaiI	ACGT	3 cut(s)	145, 225, 301
TaqI	TCGA	5 cut(s)	485, 542, 718, 887, 1199
TauI	GCSGC	2 cut(s)	133, 136
TfiI	GAWTC	7 cut(s)	93, 308, 422, 535, 668, 725, 786
Tru1I	TTAA	6 cut(s)	624, 686, 711, 735, 1124, 1152
Tru9I	TTAA	6 cut(s)	624, 686, 711, 735, 1124, 1152
TseFI	GTSAC	1 cut(s)	705
TseI	GCWGC	1 cut(s)	926
Tsp45I	GTSAC	1 cut(s)	705
TspDTI	ATGAA	7 cut(s)	71, 548, 738, 759, 1044, 1101, 1136
TspGWI	ACGGA	1 cut(s)	27
Tth111I	GACNNNGTC	1 cut(s)	867
XapI	RAATTY	2 cut(s)	445, 487
XceI	RCATGY	1 cut(s)	830
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XmiI	GTMKAC	1 cut(s)	1119
XspI	CTAG	2 cut(s)	45, 228
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.